Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000677.1

Orthogroup ID

OG0005503

Physical Location & Seq

Genomic Coordinates Forward (+)

69179 .. 70433

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000677.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgactgaaaacatgagtatatctgtgaacgggcaatctcaagtccctccaggtttcagatttcatccaaccgaagaggagctcttgcagtactacttgaggaagaagatatccagtcagaggattgatctcgatgtcatccgcgaggtcgatctcaataaacttgaaccatgggacgtccaagaaaagtgcaacataggaaccacaccacaaaatgattggtatttcttcagccacaaggacaagaagtatcctaccggaacacgcacaaatcgtgcaacagctgccgggttctggaaggccactggccgtgataaggtgatacgcagcaactgcaagcggatcggtatgaggaaaactcttgtgttctacaaaggaagagccccccgtggccaaaaatctgattggatcatgcacgagtatagactcgacgacaacactagcagaatcactgatgtctccgttgtcgttggggaggcatctcaagaggagggatgggtggtttgcagaatcttcaagaagaaaaatcttcacaaaaccatagacagcccaattttgattgcaccaacttcatctatcacaacagataatattacaagtatctttgttagttcctgtgattataatgatgaggaaactttgaagcatatacttgactgcatgggatcaaggacctgcaaggaagaaactaatgaagcaaacaactcattaatcatgaaccacattcatgggtttcatgacgatgatgataggttcttgaatcttcctagcctagagagcccaaactcgtctgcagagaatgatgacccggtgggtcatcaaagcgtggactcggttggcctcaccaactgggcagcgcttgatcgtttcgtggctgcacaactcgatggccgtgaaacgatgacctacccggaatcagggaagtgcttcagtactgatcaccatgattatcatgatcatgagctccaattaccaactactctgagatcatcgaattcatccagcaacgagatcgagctgtggcctacttttgctccacatagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0044085 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

348

Amino Acids

39.79

Weight (kDa)

5.79

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46770
fragaria_vesca	FvH4_7g17540 FvH4_7g17550
malus_domestica	MD01G1088100.v1.1 MD01G1088300.v1.1 MD07G1158300.v1.1 MD08G1232800.v1.1
prunus_persica	Prupe.2G196600_v2.0.a1
pyrus_communis	pycom01g11190 pycom07g15480
rosa_chinensis	RchiOBHm_Chr1g0360971 RchiOBHm_Chr1g0361001
rosa_laevigata	RLG00000027761 RLG00000027763
rosa_multiflora	Rmu_co8429119.1_g000001 Rmu_sc0000677.1_g000011 Rmu_sc0000677.1_g000019
rosa_roxburghii	Rroxscaffold_4G00295590 Rroxscaffold_4G00295630
rosa_rugosa	Rorug01G0284100
rosa_samantha	Rh1AG295300 Rh1BG260200 Rh1BG260400 Rh1CG277500 Rh1CG277600 Rh1DG290200 Rh1DG290400
rosa_wichuraiana	Rw1G026130 Rw1G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
AatII	GACGTC	1 cut(s)	180
Acc36I	ACCTGC	1 cut(s)	683
AccII	CGCG	1 cut(s)	144
AciI	CCGC	2 cut(s)	142, 340
AclWI	GGATC	3 cut(s)	350, 416, 673
AcoI	YGGCCR	3 cut(s)	307, 391, 889
AcsI	RAATTY	1 cut(s)	994
AcuI	CTGAAG	2 cut(s)	214, 913
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	2 cut(s)	92, 934
AfeI	AGCGCT	1 cut(s)	858
AfiI	CCNNNNNNNGG	4 cut(s)	120, 294, 316, 917
AgsI	TTSAA	4 cut(s)	167, 517, 643, 760
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	4 cut(s)	82, 284, 964, 1018
AluI	AGCT	4 cut(s)	82, 284, 964, 1018
Alw21I	GWGCWC	2 cut(s)	84, 966
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	3 cut(s)	350, 416, 673
AlwNI	CAGNNNCTG	1 cut(s)	333
Aor51HI	AGCGCT	1 cut(s)	858
AoxI	GGCC	6 cut(s)	300, 307, 391, 838, 889, 1022
ApeKI	GCWGC	4 cut(s)	284, 327, 854, 875
ApoI	RAATTY	1 cut(s)	994
AseI	ATTAAT	1 cut(s)	710
Asp700I	GAANNNNTTC	1 cut(s)	926
AspLEI	GCGC	1 cut(s)	859
AspS9I	GGNCC	1 cut(s)	672
AsuC2I	CCSGG	3 cut(s)	289, 809, 911
AsuHPI	GGTGA	3 cut(s)	331, 835, 932
AvaII	GGWCC	1 cut(s)	672
BalI	TGGCCA	1 cut(s)	393
BanII	GRGCYC	4 cut(s)	84, 385, 782, 966
BauI	CACGAG	1 cut(s)	416
Bbv12I	GWGCWC	2 cut(s)	84, 966
BbvI	GCAGC	4 cut(s)	271, 339, 862, 866
BccI	CCATC	2 cut(s)	489, 881
BceAI	ACGGC	2 cut(s)	294, 876
BcgI	CGANNNNNNTGC	4 cut(s)	325, 359, 994, 1028
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	261
BclI	TGATCA	2 cut(s)	937, 955
BcnI	CCSGG	3 cut(s)	289, 809, 911
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	3 cut(s)	441, 768, 773
BfmI	CTRYAG	1 cut(s)	792
BfoI	RGCGCY	1 cut(s)	860
BfuAI	ACCTGC	1 cut(s)	683
BfuI	GTATCC	1 cut(s)	261
BisI	GCNGC	4 cut(s)	285, 328, 855, 876
BlsI	GCNGC	4 cut(s)	286, 329, 856, 877
BmcAI	AGTACT	2 cut(s)	92, 934
Bme1390I	CCNGG	4 cut(s)	51, 289, 809, 911
Bme18I	GGWCC	1 cut(s)	672
BmgT120I	GGNCC	1 cut(s)	672
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	4 cut(s)	51, 289, 809, 911
BmrI	ACTGGG	1 cut(s)	859
BmsI	GCATC	1 cut(s)	488
BmuI	ACTGGG	1 cut(s)	859
BplI	GAGNNNNNCTC	2 cut(s)	343, 375
BpmI	CTGGAG	1 cut(s)	33
BpuEI	CTTGAG	3 cut(s)	24, 118, 468
BpuMI	CCSGG	3 cut(s)	289, 809, 911
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	170, 388
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	1 cut(s)	1018
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 294, 316, 917
Bse1I	ACTGG	3 cut(s)	114, 310, 854
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	170, 388
BseGI	GGATG	4 cut(s)	64, 138, 500, 998
BseLI	CCNNNNNNNGG	4 cut(s)	120, 294, 316, 917
BseMII	CTCAG	1 cut(s)	974
BseNI	ACTGG	3 cut(s)	114, 310, 854
BseRI	GAGGAG	2 cut(s)	92, 503
BseXI	GCAGC	4 cut(s)	271, 339, 862, 866
BsgI	GTGCAG	1 cut(s)	861
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	6 cut(s)	302, 309, 393, 840, 891, 1024
BsiHKAI	GWGCWC	2 cut(s)	84, 966
BsiSI	CCGG	4 cut(s)	258, 288, 809, 911
BslFI	GGGAC	2 cut(s)	29, 188
BslI	CCNNNNNNNGG	4 cut(s)	120, 294, 316, 917
BsmAI	GTCTC	1 cut(s)	463
BsmFI	GGGAC	2 cut(s)	29, 188
BsnI	GGCC	6 cut(s)	302, 309, 393, 840, 891, 1024
Bsp1286I	GDGCHC	4 cut(s)	84, 385, 782, 966
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	2 cut(s)	142, 340
BspANI	GGCC	6 cut(s)	302, 309, 393, 840, 891, 1024
BspCNI	CTCAG	1 cut(s)	975
BspFNI	CGCG	1 cut(s)	144
BspHI	TCATGA	4 cut(s)	714, 736, 952, 958
BspLI	GGNNCC	1 cut(s)	202
BspMAI	CTGCAG	1 cut(s)	796
BspMI	ACCTGC	1 cut(s)	683
BspPI	GGATC	3 cut(s)	350, 416, 673
BspQI	GCTCTTC	1 cut(s)	373
BsrI	ACTGG	3 cut(s)	114, 310, 854
BssECI	CCNNGG	2 cut(s)	170, 388
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	51
Bst6I	CTCTTC	2 cut(s)	69, 373
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	2 cut(s)	284, 333
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	983
BstDSI	CCRYGG	2 cut(s)	170, 388
BstF5I	GGATG	4 cut(s)	64, 138, 500, 998
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	860
BstHHI	GCGC	1 cut(s)	859
BstMAI	GTCTC	1 cut(s)	463
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 333, 777
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	4 cut(s)	49, 287, 807, 909
BstSFI	CTRYAG	1 cut(s)	792
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	4 cut(s)	271, 339, 862, 866
BstXI	CCANNNNNNTGG	1 cut(s)	728
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	6 cut(s)	302, 309, 393, 840, 891, 1024
BtgI	CCRYGG	2 cut(s)	170, 388
BtsCI	GGATG	4 cut(s)	64, 138, 500, 998
BtsIMutI	CAGTG	2 cut(s)	303, 450
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	1 cut(s)	338
CaiI	CAGNNNCTG	1 cut(s)	333
CciI	TCATGA	4 cut(s)	714, 736, 952, 958
CfoI	GCGC	1 cut(s)	859
Cfr13I	GGNCC	1 cut(s)	672
Csp6I	GTAC	2 cut(s)	91, 933
CviQI	GTAC	2 cut(s)	91, 933
DdeI	CTNAG	1 cut(s)	983
EaeI	YGGCCR	3 cut(s)	307, 391, 889
Eam1104I	CTCTTC	2 cut(s)	69, 373
EarI	CTCTTC	2 cut(s)	69, 373
Ecl136II	GAGCTC	2 cut(s)	82, 964
Eco130I	CCWWGG	1 cut(s)	170
Eco24I	GRGCYC	4 cut(s)	84, 385, 782, 966
Eco32I	GATATC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	672
Eco47III	AGCGCT	1 cut(s)	858
Eco53kI	GAGCTC	2 cut(s)	82, 964
Eco57I	CTGAAG	2 cut(s)	214, 913
EcoICRI	GAGCTC	2 cut(s)	82, 964
EcoO109I	RGGNCCY	1 cut(s)	672
EcoRI	GAATTC	1 cut(s)	994
EcoRII	CCWGG	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	4 cut(s)	84, 385, 782, 966
ErhI	CCWWGG	1 cut(s)	170
FaqI	GGGAC	2 cut(s)	29, 188
FbaI	TGATCA	2 cut(s)	937, 955
Fnu4HI	GCNGC	4 cut(s)	285, 328, 855, 876
FokI	GGATG	4 cut(s)	51, 125, 507, 985
FriOI	GRGCYC	4 cut(s)	84, 385, 782, 966
Fsp4HI	GCNGC	4 cut(s)	285, 328, 855, 876
FspBI	CTAG	3 cut(s)	441, 768, 773
GlaI	GCGC	1 cut(s)	858
GluI	GCNGC	4 cut(s)	285, 328, 855, 876
GsuI	CTGGAG	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	860
HaeIII	GGCC	6 cut(s)	302, 309, 393, 840, 891, 1024
HapII	CCGG	4 cut(s)	258, 288, 809, 911
HhaI	GCGC	1 cut(s)	859
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	857
HinP1I	GCGC	1 cut(s)	857
HinfI	GANTC	6 cut(s)	426, 447, 510, 760, 830, 914
HpaII	CCGG	4 cut(s)	258, 288, 809, 911
HphI	GGTGA	3 cut(s)	331, 835, 932
Hpy166II	GTNNAC	2 cut(s)	28, 829
Hpy188I	TCNGA	4 cut(s)	59, 120, 403, 984
Hpy188III	TCNNGA	9 cut(s)	131, 295, 485, 517, 715, 737, 757, 953, 959
Hpy8I	GTNNAC	2 cut(s)	28, 829
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 333, 777
HpyF3I	CTNAG	1 cut(s)	983
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	1 cut(s)	857
Ksp22I	TGATCA	2 cut(s)	937, 955
LguI	GCTCTTC	1 cut(s)	373
LmnI	GCTCC	3 cut(s)	79, 969, 1039
Lsp1109I	GCAGC	4 cut(s)	271, 339, 862, 866
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	3 cut(s)	441, 768, 773
MaeII	ACGT	1 cut(s)	177
MhlI	GDGCHC	4 cut(s)	84, 385, 782, 966
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	3 cut(s)	552, 968, 994
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	2 cut(s)	420, 824
MmeI	TCCRAC	1 cut(s)	92
Mox20I	TGGCCA	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	926
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	1 cut(s)	710
MslI	CAYNNNNRTG	4 cut(s)	726, 741, 957, 1042
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	4 cut(s)	258, 288, 809, 911
MspR9I	CCNGG	4 cut(s)	51, 289, 809, 911
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	3 cut(s)	284, 333, 777
NciI	CCSGG	3 cut(s)	289, 809, 911
NcoI	CCATGG	1 cut(s)	170
NlaIV	GGNNCC	1 cut(s)	202
PagI	TCATGA	4 cut(s)	714, 736, 952, 958
PciSI	GCTCTTC	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	926
PfeI	GAWTC	4 cut(s)	447, 510, 760, 914
PkrI	GCNGC	4 cut(s)	286, 329, 856, 877
PleI	GAGTC	2 cut(s)	420, 824
PpsI	GAGTC	2 cut(s)	420, 824
PpuMI	RGGWCCY	1 cut(s)	672
PshBI	ATTAAT	1 cut(s)	710
PsiI	TTATAA	1 cut(s)	624
Psp124BI	GAGCTC	2 cut(s)	84, 966
Psp5II	RGGWCCY	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	672
PspPPI	RGGWCCY	1 cut(s)	672
PstI	CTGCAG	1 cut(s)	796
PstNI	CAGNNNCTG	1 cut(s)	333
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	2 cut(s)	92, 934
RsaNI	GTAC	2 cut(s)	91, 933
RseI	CAYNNNNRTG	4 cut(s)	726, 741, 957, 1042
SacI	GAGCTC	2 cut(s)	84, 966
SapI	GCTCTTC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	710
SatI	GCNGC	4 cut(s)	285, 328, 855, 876
Sau96I	GGNCC	1 cut(s)	672
ScaI	AGTACT	2 cut(s)	92, 934
SchI	GAGTC	2 cut(s)	420, 824
ScrFI	CCNGG	4 cut(s)	51, 289, 809, 911
SduI	GDGCHC	4 cut(s)	84, 385, 782, 966
SfaNI	GCATC	1 cut(s)	488
SfcI	CTRYAG	1 cut(s)	792
SinI	GGWCC	1 cut(s)	672
SmiMI	CAYNNNNRTG	4 cut(s)	726, 741, 957, 1042
SmlI	CTYRAG	3 cut(s)	39, 97, 483
SmoI	CTYRAG	3 cut(s)	39, 97, 483
Sse9I	AATT	3 cut(s)	552, 968, 994
SsiI	CCGC	2 cut(s)	142, 340
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	3 cut(s)	441, 768, 773
SstI	GAGCTC	2 cut(s)	84, 966
StyD4I	CCNGG	4 cut(s)	49, 287, 807, 909
StyI	CCWWGG	1 cut(s)	170
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	6 cut(s)	132, 150, 429, 885, 992, 1014
TasI	AATT	3 cut(s)	552, 968, 994
TatI	WGTACW	2 cut(s)	90, 932
TfiI	GAWTC	4 cut(s)	447, 510, 760, 914
Tru1I	TTAA	1 cut(s)	710
Tru9I	TTAA	1 cut(s)	710
TscAI	CASTG	2 cut(s)	310, 457
TseI	GCWGC	4 cut(s)	284, 327, 854, 875
TspDTI	ATGAA	7 cut(s)	53, 561, 708, 716, 725, 731, 987
TspGWI	ACGGA	1 cut(s)	451
TspRI	CASTG	2 cut(s)	310, 457
VpaK11BI	GGWCC	1 cut(s)	672
VspI	ATTAAT	1 cut(s)	710
XapI	RAATTY	1 cut(s)	994
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	926
XspI	CTAG	3 cut(s)	441, 768, 773
ZraI	GACGTC	1 cut(s)	178
ZrmI	AGTACT	2 cut(s)	92, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.