Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8429119.1

Orthogroup ID

OG0005503

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 792

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8429119.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

cttgtgttctacaaaggaagagccccccgtggccaaaaatctgattggatcatgcacgagtatagactcgacgacaacactagcagaatcactgatgtctccgttgtcgttggggaggcatctcaagaggagggatgggtggtttgcagaatcttcaagaagaaaaatcttcacaaaaccatagacagcccaattttgattgcaccaacttcatctatcacaacagataatattacaagtatctttgttagttcctgtgattataatgatgaggaaactttgaagcatatacttgactgcatgggatcaaggacctgcaaggaagaaactaatgaagcaaacaactcattaatcatgaaccacattcatgggtttcatgacgatgatgataggttcttgaatcttcctagcctagagagcccaaactcgtctgcagagaatgatgacccggtgggtcatcaaagcgtggactcggttggcctcaccaactgggcagcgcttgatcgtttcgtggctgcacaactcgatggccgtgaaacgatgacctacccggaatcagggaagtgcttcagtactgatcaccatgattatcatgatcatgagctccaattaccaactactctgagatcatcgaattcatccagcaacgagatcgagctgtggcctacttttgctccacatagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0044085 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

228

Amino Acids

25.77

Weight (kDa)

4.96

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46770
fragaria_vesca	FvH4_7g17540 FvH4_7g17550
malus_domestica	MD01G1088100.v1.1 MD01G1088300.v1.1 MD07G1158300.v1.1 MD08G1232800.v1.1
prunus_persica	Prupe.2G196600_v2.0.a1
pyrus_communis	pycom01g11190 pycom07g15480
rosa_chinensis	RchiOBHm_Chr1g0360971 RchiOBHm_Chr1g0361001
rosa_laevigata	RLG00000027761 RLG00000027763
rosa_multiflora	Rmu_co8429119.1_g000001 Rmu_sc0000677.1_g000011 Rmu_sc0000677.1_g000019
rosa_roxburghii	Rroxscaffold_4G00295590 Rroxscaffold_4G00295630
rosa_rugosa	Rorug01G0284100
rosa_samantha	Rh1AG295300 Rh1BG260200 Rh1BG260400 Rh1CG277500 Rh1CG277600 Rh1DG290200 Rh1DG290400
rosa_wichuraiana	Rw1G026130 Rw1G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
Acc36I	ACCTGC	1 cut(s)	323
AclWI	GGATC	2 cut(s)	56, 313
AcoI	YGGCCR	2 cut(s)	31, 529
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	1 cut(s)	553
AfaI	GTAC	1 cut(s)	574
AfeI	AGCGCT	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	3 cut(s)	157, 283, 400
AluBI	AGCT	2 cut(s)	604, 658
AluI	AGCT	2 cut(s)	604, 658
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	2 cut(s)	56, 313
Aor51HI	AGCGCT	1 cut(s)	498
AoxI	GGCC	4 cut(s)	31, 478, 529, 662
ApeKI	GCWGC	2 cut(s)	494, 515
ApoI	RAATTY	1 cut(s)	634
AseI	ATTAAT	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	312
AsuC2I	CCSGG	2 cut(s)	449, 551
AsuHPI	GGTGA	2 cut(s)	475, 572
AvaII	GGWCC	1 cut(s)	312
BalI	TGGCCA	1 cut(s)	33
BanII	GRGCYC	3 cut(s)	25, 422, 606
BauI	CACGAG	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	502, 506
BccI	CCATC	2 cut(s)	129, 521
BceAI	ACGGC	1 cut(s)	516
BcgI	CGANNNNNNTGC	2 cut(s)	634, 668
BclI	TGATCA	2 cut(s)	577, 595
BcnI	CCSGG	2 cut(s)	449, 551
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	3 cut(s)	81, 408, 413
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	500
BfuAI	ACCTGC	1 cut(s)	323
BisI	GCNGC	2 cut(s)	495, 516
BlsI	GCNGC	2 cut(s)	496, 517
BmcAI	AGTACT	1 cut(s)	574
Bme1390I	CCNGG	2 cut(s)	449, 551
Bme18I	GGWCC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	449, 551
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	108
BpuMI	CCSGG	2 cut(s)	449, 551
BsaJI	CCNNGG	1 cut(s)	28
BsaXI	ACNNNNNCTCC	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	2 cut(s)	140, 638
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	502, 506
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	4 cut(s)	33, 480, 531, 664
BsiHKAI	GWGCWC	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	449, 551
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	1 cut(s)	103
BsnI	GGCC	4 cut(s)	33, 480, 531, 664
Bsp1286I	GDGCHC	3 cut(s)	25, 422, 606
Bsp143I	GATC	7 cut(s)	48, 305, 502, 577, 595, 626, 651
BspANI	GGCC	4 cut(s)	33, 480, 531, 664
BspCNI	CTCAG	1 cut(s)	615
BspHI	TCATGA	4 cut(s)	354, 376, 592, 598
BspMAI	CTGCAG	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	2 cut(s)	56, 313
BspQI	GCTCTTC	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	7 cut(s)	48, 305, 502, 577, 595, 626, 651
BssSI	CACGAG	1 cut(s)	56
Bst2BI	CACGAG	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	623
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	140, 638
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	7 cut(s)	51, 308, 505, 580, 598, 629, 654
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	7 cut(s)	48, 305, 502, 577, 595, 626, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstSCI	CCNGG	2 cut(s)	447, 549
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	502, 506
BstXI	CCANNNNNNTGG	1 cut(s)	368
BsuRI	GGCC	4 cut(s)	33, 480, 531, 664
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	140, 638
BtsIMutI	CAGTG	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	323
CciI	TCATGA	4 cut(s)	354, 376, 592, 598
CfoI	GCGC	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	8 cut(s)	52, 301, 355, 368, 377, 584, 593, 599
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	1 cut(s)	623
DpnI	GATC	7 cut(s)	50, 307, 504, 579, 597, 628, 653
DpnII	GATC	7 cut(s)	48, 305, 502, 577, 595, 626, 651
EaeI	YGGCCR	2 cut(s)	31, 529
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	604
Eco24I	GRGCYC	3 cut(s)	25, 422, 606
Eco47I	GGWCC	1 cut(s)	312
Eco47III	AGCGCT	1 cut(s)	498
Eco53kI	GAGCTC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	553
EcoICRI	GAGCTC	1 cut(s)	604
EcoO109I	RGGNCCY	1 cut(s)	312
EcoRI	GAATTC	1 cut(s)	634
EcoT38I	GRGCYC	3 cut(s)	25, 422, 606
FaeI	CATG	8 cut(s)	55, 304, 358, 371, 380, 587, 596, 602
FatI	CATG	8 cut(s)	51, 300, 354, 367, 376, 583, 592, 598
FbaI	TGATCA	2 cut(s)	577, 595
Fnu4HI	GCNGC	2 cut(s)	495, 516
FokI	GGATG	2 cut(s)	147, 625
FriOI	GRGCYC	3 cut(s)	25, 422, 606
Fsp4HI	GCNGC	2 cut(s)	495, 516
FspBI	CTAG	3 cut(s)	81, 408, 413
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	2 cut(s)	495, 516
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	4 cut(s)	33, 480, 531, 664
HapII	CCGG	2 cut(s)	449, 551
HhaI	GCGC	1 cut(s)	499
Hin1II	CATG	8 cut(s)	55, 304, 358, 371, 380, 587, 596, 602
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HinfI	GANTC	6 cut(s)	66, 87, 150, 400, 470, 554
HpaII	CCGG	2 cut(s)	449, 551
HphI	GGTGA	2 cut(s)	475, 572
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	2 cut(s)	43, 624
Hpy188III	TCNNGA	7 cut(s)	125, 157, 355, 377, 397, 593, 599
Hpy8I	GTNNAC	1 cut(s)	469
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4V	TGCA	7 cut(s)	55, 147, 203, 300, 318, 434, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	1 cut(s)	623
Hsp92II	CATG	8 cut(s)	55, 304, 358, 371, 380, 587, 596, 602
HspAI	GCGC	1 cut(s)	497
Ksp22I	TGATCA	2 cut(s)	577, 595
Kzo9I	GATC	7 cut(s)	48, 305, 502, 577, 595, 626, 651
LguI	GCTCTTC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	609, 679
LpnPI	CCDG	7 cut(s)	268, 328, 462, 475, 543, 564, 655
Lsp1109I	GCAGC	2 cut(s)	502, 506
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	3 cut(s)	81, 408, 413
MalI	GATC	7 cut(s)	50, 307, 504, 579, 597, 628, 653
MboI	GATC	7 cut(s)	48, 305, 502, 577, 595, 626, 651
MboII	GAAGA	6 cut(s)	30, 145, 161, 172, 335, 395
MhlI	GDGCHC	3 cut(s)	25, 422, 606
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	3 cut(s)	192, 608, 634
MluNI	TGGCCA	1 cut(s)	33
MlyI	GAGTC	2 cut(s)	60, 464
MnlI	CCTC	5 cut(s)	109, 121, 124, 265, 491
Mox20I	TGGCCA	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	566
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	4 cut(s)	366, 381, 597, 682
Msp20I	TGGCCA	1 cut(s)	33
MspI	CCGG	2 cut(s)	449, 551
MspR9I	CCNGG	2 cut(s)	449, 551
MwoI	GCNNNNNNNGC	1 cut(s)	417
NciI	CCSGG	2 cut(s)	449, 551
NdeII	GATC	7 cut(s)	48, 305, 502, 577, 595, 626, 651
NlaIII	CATG	8 cut(s)	55, 304, 358, 371, 380, 587, 596, 602
PagI	TCATGA	4 cut(s)	354, 376, 592, 598
PciSI	GCTCTTC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	4 cut(s)	87, 150, 400, 554
PkrI	GCNGC	2 cut(s)	496, 517
PleI	GAGTC	2 cut(s)	60, 464
PpsI	GAGTC	2 cut(s)	60, 464
PpuMI	RGGWCCY	1 cut(s)	312
PshBI	ATTAAT	1 cut(s)	350
PsiI	TTATAA	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	312
PspPPI	RGGWCCY	1 cut(s)	312
PstI	CTGCAG	1 cut(s)	436
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
RseI	CAYNNNNRTG	4 cut(s)	366, 381, 597, 682
SacI	GAGCTC	1 cut(s)	606
SapI	GCTCTTC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	2 cut(s)	495, 516
Sau3AI	GATC	7 cut(s)	48, 305, 502, 577, 595, 626, 651
Sau96I	GGNCC	1 cut(s)	312
ScaI	AGTACT	1 cut(s)	574
SchI	GAGTC	2 cut(s)	60, 464
ScrFI	CCNGG	2 cut(s)	449, 551
SduI	GDGCHC	3 cut(s)	25, 422, 606
SetI	ASST	5 cut(s)	317, 395, 548, 606, 660
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	312
SmiMI	CAYNNNNRTG	4 cut(s)	366, 381, 597, 682
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	3 cut(s)	192, 608, 634
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	3 cut(s)	81, 408, 413
SstI	GAGCTC	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	447, 549
TaqI	TCGA	4 cut(s)	69, 525, 632, 654
TasI	AATT	3 cut(s)	192, 608, 634
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	4 cut(s)	87, 150, 400, 554
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	2 cut(s)	494, 515
TspDTI	ATGAA	6 cut(s)	201, 348, 356, 365, 371, 627
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	312
VspI	ATTAAT	1 cut(s)	350
XapI	RAATTY	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	3 cut(s)	81, 408, 413
ZrmI	AGTACT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.