Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005503

Physical Location & Seq

Genomic Coordinates Reverse (-)

12119282 .. 12120692

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGATATACAAGCCATAAAGACAAGAAGTACCCGACTGGAACACGAACAAATCGTGCAACTGCTGCCGGATTCTGGAAGGCAACTGGCCGTGATAAAGTGATATGTAGCAACTGCAGGCGGATCGGTATGAGGAAGACCCTTGTGTTCTACAAAGGCCGAGCTCCCCATGGCCAAAAGTCTGATTCGATCATGCATGAATATAGACTTGACGACAATAATACTAGCAATTGCAATATCACTAATGTACCCACTGTTGTGGGAGATGCAGCACAAGAGGAGGGATGGGTGGTTTGCCGAATTTTCAAGAAGAAAAACCTCCACAAAATTTTGAGCAGCCCAGTCTTGAGTACAACTACATCCATCACAACAGAAACAAGAAGTGGCCAATCACTGTTTGATTCGTGTCCCGAGGGAGCTTTGGAGCAAATACTTCAATACATGGGGAGGACATGCAAGGAAGAAGAGAATGAAGCCTACATTAACAACAATAGCACAAGATTTAATCTCCAACCAATCAACACAGGCATTAGTAATACTAGTAATCACAATGGCTTCCATGAAAAGTTCTTGAAACTTCCGACCCTAGACAGCCCAAACTCCAGAAGCAGCCAGGATTGTTACCAACGAAACATTCATGAGGGGATGATGGTCACAGAGAATAATAACAACCCGGTGAGTCCTTTCACTGATCATCACCAAAATATGGATTACCATGCACACCACATGGACTCAGGAATCACCAACTGGGCAGCTCTCGACCGCCTTGTGGCTTCACAACTCAATGGACAAACCGAGACCTCTAGGCAGTTAGCTTGTTTCAATATCACTGACCCTTATGACAACGATGATCATGATCATGAACTCCAGTTACCAAGTACCCTACGAGGACCGTTGTCTTCATCCAACACCTACCATGCCACACACGACTACAACAATAGGGAGATCGACCTGTGGAATTTCGATCGACAATCATCACCATTGTCATCCTCCGACACGCTGTGCCACTTGTCGACCGGTCCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0044085 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

343

Amino Acids

38.6

Weight (kDa)

6.49

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	5 - 70	3.2e-17	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46770
fragaria_vesca	FvH4_7g17540 FvH4_7g17550
malus_domestica	MD01G1088100.v1.1 MD01G1088300.v1.1 MD07G1158300.v1.1 MD08G1232800.v1.1
prunus_persica	Prupe.2G196600_v2.0.a1
pyrus_communis	pycom01g11190 pycom07g15480
rosa_chinensis	RchiOBHm_Chr1g0360971 RchiOBHm_Chr1g0361001
rosa_laevigata	RLG00000027761 RLG00000027763
rosa_multiflora	Rmu_co8429119.1_g000001 Rmu_sc0000677.1_g000011 Rmu_sc0000677.1_g000019
rosa_roxburghii	Rroxscaffold_4G00295590 Rroxscaffold_4G00295630
rosa_rugosa	Rorug01G0284100
rosa_samantha	Rh1AG295300 Rh1BG260200 Rh1BG260400 Rh1CG277500 Rh1CG277600 Rh1DG290200 Rh1DG290400
rosa_wichuraiana	Rw1G026130 Rw1G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	706
AccI	GTMKAC	1 cut(s)	1013
AciI	CCGC	2 cut(s)	121, 763
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	3 cut(s)	88, 172, 385
AcsI	RAATTY	3 cut(s)	300, 327, 958
AdeI	CACNNNGTG	1 cut(s)	1002
AfaI	GTAC	4 cut(s)	32, 249, 352, 880
AfiI	CCNNNNNNNGG	3 cut(s)	75, 706, 769
AgeI	ACCGGT	1 cut(s)	1016
AgsI	TTSAA	4 cut(s)	307, 437, 574, 823
AhlI	ACTAGT	1 cut(s)	539
AjnI	CCWGG	1 cut(s)	612
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	4 cut(s)	164, 419, 755, 815
AluI	AGCT	4 cut(s)	164, 419, 755, 815
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	791
AlwI	GGATC	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	4 cut(s)	88, 157, 172, 385
ApeKI	GCWGC	5 cut(s)	65, 269, 336, 609, 752
ApoI	RAATTY	3 cut(s)	300, 327, 958
AsiGI	ACCGGT	1 cut(s)	1016
AspS9I	GGNCC	2 cut(s)	890, 1019
AsuC2I	CCSGG	1 cut(s)	674
AsuHPI	GGTGA	4 cut(s)	688, 689, 733, 969
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	2 cut(s)	890, 1019
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BalI	TGGCCA	2 cut(s)	174, 387
BanII	GRGCYC	1 cut(s)	166
BbsI	GAAGAC	2 cut(s)	143, 891
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	5 cut(s)	52, 281, 348, 621, 764
BccI	CCATC	3 cut(s)	279, 371, 643
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	614
BclI	TGATCA	3 cut(s)	691, 850, 856
BcnI	CCSGG	1 cut(s)	674
BcoDI	GTCTC	1 cut(s)	791
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	4 cut(s)	225, 540, 587, 804
BfmI	CTRYAG	1 cut(s)	115
BisI	GCNGC	5 cut(s)	66, 270, 337, 610, 753
BlsI	GCNGC	5 cut(s)	67, 271, 338, 611, 754
Bme1390I	CCNGG	2 cut(s)	614, 674
Bme18I	GGWCC	2 cut(s)	890, 1019
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	2 cut(s)	890, 1019
BmrFI	CCNGG	2 cut(s)	614, 674
BmrI	ACTGGG	2 cut(s)	335, 757
BmsI	GCATC	1 cut(s)	256
BmuI	ACTGGG	2 cut(s)	335, 757
BoxI	GACNNNNGTC	1 cut(s)	895
BpiI	GAAGAC	2 cut(s)	143, 891
BpmI	CTGGAG	2 cut(s)	586, 851
BpuEI	CTTGAG	1 cut(s)	367
BpuMI	CCSGG	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	855
BsaI	GGTCTC	1 cut(s)	791
BsaJI	CCNNGG	2 cut(s)	169, 411
BsaWI	WCCGGW	1 cut(s)	1016
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 706, 769
Bse118I	RCCGGY	1 cut(s)	1016
Bse1I	ACTGG	5 cut(s)	43, 91, 341, 752, 868
Bse8I	GATNNNNATC	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	2 cut(s)	169, 411
BseGI	GGATG	5 cut(s)	290, 359, 651, 902, 986
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	3 cut(s)	75, 706, 769
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	5 cut(s)	43, 91, 341, 752, 868
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	5 cut(s)	52, 281, 348, 621, 764
Bsh1285I	CGRYCG	3 cut(s)	763, 967, 1017
BshFI	GGCC	4 cut(s)	90, 159, 174, 387
BshTI	ACCGGT	1 cut(s)	1016
BsiEI	CGRYCG	3 cut(s)	763, 967, 1017
BsiHKAI	GWGCWC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	3 cut(s)	69, 674, 1017
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	3 cut(s)	75, 706, 769
BsmAI	GTCTC	1 cut(s)	791
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	4 cut(s)	90, 159, 174, 387
Bso31I	GGTCTC	1 cut(s)	791
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	7 cut(s)	123, 189, 691, 850, 856, 945, 964
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	2 cut(s)	121, 763
BspANI	GGCC	4 cut(s)	90, 159, 174, 387
BspCNI	CTCAG	1 cut(s)	746
BspHI	TCATGA	3 cut(s)	637, 853, 859
BspMAI	CTGCAG	1 cut(s)	119
BspPI	GGATC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	791
BsrFI	RCCGGY	1 cut(s)	1016
BsrI	ACTGG	5 cut(s)	43, 91, 341, 752, 868
BssAI	RCCGGY	1 cut(s)	1016
BssECI	CCNNGG	2 cut(s)	169, 411
BssMI	GATC	7 cut(s)	123, 189, 691, 850, 856, 945, 964
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	3 cut(s)	256, 396, 894
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	733
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	5 cut(s)	290, 359, 651, 902, 986
BstKTI	GATC	7 cut(s)	126, 192, 694, 853, 859, 948, 967
BstMAI	GTCTC	1 cut(s)	791
BstMBI	GATC	7 cut(s)	123, 189, 691, 850, 856, 945, 964
BstMCI	CGRYCG	3 cut(s)	763, 967, 1017
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	456
BstPAI	GACNNNNGTC	1 cut(s)	895
BstSCI	CCNGG	2 cut(s)	612, 672
BstSFI	CTRYAG	1 cut(s)	115
BstV1I	GCAGC	5 cut(s)	52, 281, 348, 621, 764
BstV2I	GAAGAC	2 cut(s)	143, 891
BstXI	CCANNNNNNTGG	1 cut(s)	259
BsuRI	GGCC	4 cut(s)	90, 159, 174, 387
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	5 cut(s)	290, 359, 651, 902, 986
BtsIMutI	CAGTG	4 cut(s)	252, 392, 687, 828
Cac8I	GCNNGC	1 cut(s)	119
CciI	TCATGA	3 cut(s)	637, 853, 859
Cfr10I	RCCGGY	1 cut(s)	1016
Cfr13I	GGNCC	2 cut(s)	890, 1019
Csp6I	GTAC	4 cut(s)	31, 248, 351, 879
CspAI	ACCGGT	1 cut(s)	1016
CviQI	GTAC	4 cut(s)	31, 248, 351, 879
DdeI	CTNAG	1 cut(s)	733
DpnI	GATC	7 cut(s)	125, 191, 693, 852, 858, 947, 966
DpnII	GATC	7 cut(s)	123, 189, 691, 850, 856, 945, 964
DraIII	CACNNNGTG	1 cut(s)	1002
EaeI	YGGCCR	3 cut(s)	88, 172, 385
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
EciI	GGCGGA	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	791
Eco47I	GGWCC	2 cut(s)	890, 1019
Eco53kI	GAGCTC	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	612
EcoT14I	CCWWGG	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	169
FaqI	GGGAC	1 cut(s)	393
FbaI	TGATCA	3 cut(s)	691, 850, 856
FblI	GTMKAC	1 cut(s)	1013
Fnu4HI	GCNGC	5 cut(s)	66, 270, 337, 610, 753
FokI	GGATG	5 cut(s)	297, 346, 658, 889, 973
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	5 cut(s)	66, 270, 337, 610, 753
FspBI	CTAG	4 cut(s)	225, 540, 587, 804
GluI	GCNGC	5 cut(s)	66, 270, 337, 610, 753
GsuI	CTGGAG	2 cut(s)	586, 851
HaeIII	GGCC	4 cut(s)	90, 159, 174, 387
HapII	CCGG	3 cut(s)	69, 674, 1017
HincII	GTYRAC	1 cut(s)	1014
HindII	GTYRAC	1 cut(s)	1014
HinfI	GANTC	6 cut(s)	72, 185, 401, 679, 731, 738
HpaII	CCGG	3 cut(s)	69, 674, 1017
HphI	GGTGA	4 cut(s)	688, 689, 733, 969
Hpy166II	GTNNAC	1 cut(s)	1014
Hpy188I	TCNGA	3 cut(s)	184, 582, 994
Hpy8I	GTNNAC	1 cut(s)	1014
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	3 cut(s)	256, 396, 894
HpyCH4V	TGCA	7 cut(s)	59, 117, 196, 234, 269, 456, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	733
Ksp22I	TGATCA	3 cut(s)	691, 850, 856
Kzo9I	GATC	7 cut(s)	123, 189, 691, 850, 856, 945, 964
LmnI	GCTCC	3 cut(s)	169, 416, 424
Lsp1109I	GCAGC	5 cut(s)	52, 281, 348, 621, 764
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	4 cut(s)	225, 540, 587, 804
MaeIII	GTNAC	3 cut(s)	620, 652, 870
MalI	GATC	7 cut(s)	125, 191, 693, 852, 858, 947, 966
MboI	GATC	7 cut(s)	123, 189, 691, 850, 856, 945, 964
MboII	GAAGA	5 cut(s)	148, 322, 473, 476, 891
MfeI	CAATTG	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	166
MlsI	TGGCCA	2 cut(s)	174, 387
MluCI	AATT	4 cut(s)	229, 300, 327, 958
MluNI	TGGCCA	2 cut(s)	174, 387
MlyI	GAGTC	2 cut(s)	688, 725
MmeI	TCCRAC	4 cut(s)	535, 605, 930, 1017
Mox20I	TGGCCA	2 cut(s)	174, 387
Mph1103I	ATGCAT	1 cut(s)	198
MscI	TGGCCA	2 cut(s)	174, 387
MseI	TTAA	2 cut(s)	483, 504
MslI	CAYNNNNRTG	2 cut(s)	257, 858
Msp20I	TGGCCA	2 cut(s)	174, 387
MspI	CCGG	3 cut(s)	69, 674, 1017
MspR9I	CCNGG	2 cut(s)	614, 674
MunI	CAATTG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	674
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	7 cut(s)	123, 189, 691, 850, 856, 945, 964
NmeAIII	GCCGAG	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	652
NsiI	ATGCAT	1 cut(s)	198
NspI	RCATGY	1 cut(s)	456
OliI	CACNNNNGTG	1 cut(s)	257
PagI	TCATGA	3 cut(s)	637, 853, 859
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PfeI	GAWTC	4 cut(s)	72, 185, 401, 738
PflMI	CCANNNNNTGG	1 cut(s)	706
PinAI	ACCGGT	1 cut(s)	1016
PkrI	GCNGC	5 cut(s)	67, 271, 338, 611, 754
Ple19I	CGATCG	1 cut(s)	967
PleI	GAGTC	2 cut(s)	687, 725
PpsI	GAGTC	2 cut(s)	687, 725
PshAI	GACNNNNGTC	1 cut(s)	895
Psp124BI	GAGCTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
PspPI	GGNCC	2 cut(s)	890, 1019
PsrI	GAACNNNNNNTAC	2 cut(s)	855, 887
PstI	CTGCAG	1 cut(s)	119
PvuI	CGATCG	1 cut(s)	967
RsaI	GTAC	4 cut(s)	32, 249, 352, 880
RsaNI	GTAC	4 cut(s)	31, 248, 351, 879
RseI	CAYNNNNRTG	2 cut(s)	257, 858
SacI	GAGCTC	1 cut(s)	166
SalI	GTCGAC	1 cut(s)	1012
SaqAI	TTAA	2 cut(s)	483, 504
SatI	GCNGC	5 cut(s)	66, 270, 337, 610, 753
Sau3AI	GATC	7 cut(s)	123, 189, 691, 850, 856, 945, 964
Sau96I	GGNCC	2 cut(s)	890, 1019
SchI	GAGTC	2 cut(s)	688, 725
ScrFI	CCNGG	2 cut(s)	614, 674
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	8 cut(s)	166, 321, 421, 757, 803, 817, 914, 954
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	115
SinI	GGWCC	2 cut(s)	890, 1019
SmiMI	CAYNNNNRTG	2 cut(s)	257, 858
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	4 cut(s)	229, 300, 327, 958
SsiI	CCGC	2 cut(s)	121, 763
SspMI	CTAG	4 cut(s)	225, 540, 587, 804
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	2 cut(s)	612, 672
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	3 cut(s)	256, 396, 894
TaqI	TCGA	6 cut(s)	188, 759, 948, 963, 967, 1013
TasI	AATT	4 cut(s)	229, 300, 327, 958
TatI	WGTACW	1 cut(s)	350
TfiI	GAWTC	4 cut(s)	72, 185, 401, 738
Tru1I	TTAA	2 cut(s)	483, 504
Tru9I	TTAA	2 cut(s)	483, 504
TscAI	CASTG	4 cut(s)	259, 399, 694, 835
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	5 cut(s)	65, 269, 336, 609, 752
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	6 cut(s)	213, 486, 576, 626, 876, 891
TspRI	CASTG	4 cut(s)	259, 399, 694, 835
Van91I	CCANNNNNTGG	1 cut(s)	706
VpaK11BI	GGWCC	2 cut(s)	890, 1019
XapI	RAATTY	3 cut(s)	300, 327, 958
XceI	RCATGY	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	1013
XspI	CTAG	4 cut(s)	225, 540, 587, 804
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.