RchiOBHm_Chr1g0361001
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005503
Physical Location & Seq
Reverse (-)
52958389 .. 52959643
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58592

Sequence Viewer

Length: 1047 bp
ATGACTGAAAACATGAGTATATCTGTGAACGGGCAATCTCAAGTCCCTCCAGGTTTCAGATTTCATCCAACAGAAGAGGAGCTCTTGCAGTACTACTTGAGGAAGAAGGTATCCGGTCAGAGGATTGATCTCGATGTCATCCGCGAGGTCGATCTCAATAAACTTGAACCATGGGACGTCCAAGAAAAGTGCAACATAGGAACCACACCACAAAATGATTGGTATTTCTTCAGCCACAAGGACAAGAAGTATCCTACCGGAACACGCACAAATCGTGCAACAGCTGCAGGGTTCTGGAAGGCCACTGGCCGTGATAAGGTGATACGCAGCAACTGCAAGCGGATCGGTATGAGGAAAACTCTTGTGTTCTACAAAGGAAGAGCCCCCCGTGGCCAAAAATCTGATTGGATCATGCACGAGTATAGACTCGACGACAACACTAGCAGAATCACTGATGTCTCCGTTGTCGTTGGGGAGGCATCTCAAGAGGAGGGATGGGTGGTTTGCAGAATCTTCAAGAAGAAAAATCTTCACAAAACCATAGACAGCCCAATTTTGATTGCACCAACTTCATCTATCACAACAGATAATATTACAAGTATCTTTGTTAGTTCATGTGATTATAATGATGAGGAAACTTTGAAGCATATACTTGATTGCATGGGATCAAGGACCTGCAAGGAAAAAACTAATGAAGCAAACAACTCATTAATCATGAACCACATTCATGGGTTTCATGACGATGATGATAGGTTCTTGAATCTTCCTAGCCTAGAGAGCCCAAACTCGTCTGCAGAGAATGATGACCCGGTGGGTCATCAAAGCGTGGACTTGGTTGGCCTCACCAACTGGGCAGCGCTTGATCGTTTCGTGGCTGCACAACTCGATGGCCGAGAAACGATGACCTACCCGGAATCAGGGAACTGCTTCAGTACTGATCACCATGATTATCATGATCATGAGCTCCAATTACCAACTACTCTGAGATCATCGAATTCATCCAGCAACGTGATCGAGCTGTGGCCTACTTTTGCTCCACATAGATGA

Protein Analysis

348

Amino Acids

39.73

Weight (kDa)

5.96

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 143 1.6e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AatII GACGTC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 683
AccII CGCG 1 cut(s) 144
AciI CCGC 2 cut(s) 142, 340
AclWI GGATC 3 cut(s) 350, 416, 673
AcoI YGGCCR 3 cut(s) 307, 391, 889
AcsI RAATTY 1 cut(s) 994
AcuI CTGAAG 2 cut(s) 214, 913
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 2 cut(s) 92, 934
AfeI AGCGCT 1 cut(s) 858
AfiI CCNNNNNNNGG 3 cut(s) 120, 316, 917
AgsI TTSAA 4 cut(s) 167, 517, 643, 760
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 4 cut(s) 82, 284, 964, 1018
AluI AGCT 4 cut(s) 82, 284, 964, 1018
Alw21I GWGCWC 2 cut(s) 84, 966
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 3 cut(s) 350, 416, 673
AlwNI CAGNNNCTG 1 cut(s) 333
Aor51HI AGCGCT 1 cut(s) 858
AoxI GGCC 6 cut(s) 300, 307, 391, 838, 889, 1022
ApeKI GCWGC 4 cut(s) 284, 327, 854, 875
ApoI RAATTY 1 cut(s) 994
AseI ATTAAT 1 cut(s) 710
Asp700I GAANNNNTTC 1 cut(s) 926
AspLEI GCGC 1 cut(s) 859
AspS9I GGNCC 1 cut(s) 672
AsuC2I CCSGG 2 cut(s) 809, 911
AsuHPI GGTGA 3 cut(s) 331, 835, 932
AvaII GGWCC 1 cut(s) 672
BalI TGGCCA 1 cut(s) 393
BanII GRGCYC 4 cut(s) 84, 385, 782, 966
BauI CACGAG 1 cut(s) 416
Bbv12I GWGCWC 2 cut(s) 84, 966
BbvI GCAGC 4 cut(s) 271, 339, 862, 866
BccI CCATC 2 cut(s) 489, 881
BceAI ACGGC 1 cut(s) 294
BcgI CGANNNNNNTGC 4 cut(s) 325, 359, 994, 1028
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 2 cut(s) 121, 261
BclI TGATCA 2 cut(s) 937, 955
BcnI CCSGG 2 cut(s) 809, 911
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 3 cut(s) 441, 768, 773
BfmI CTRYAG 2 cut(s) 285, 792
BfoI RGCGCY 1 cut(s) 860
BfuAI ACCTGC 1 cut(s) 683
BfuI GTATCC 2 cut(s) 121, 261
BisI GCNGC 4 cut(s) 285, 328, 855, 876
BlsI GCNGC 4 cut(s) 286, 329, 856, 877
BmcAI AGTACT 2 cut(s) 92, 934
Bme1390I CCNGG 3 cut(s) 51, 809, 911
Bme18I GGWCC 1 cut(s) 672
BmgT120I GGNCC 1 cut(s) 672
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 3 cut(s) 51, 809, 911
BmrI ACTGGG 1 cut(s) 859
BmsI GCATC 1 cut(s) 488
BmuI ACTGGG 1 cut(s) 859
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 3 cut(s) 24, 118, 468
BpuMI CCSGG 2 cut(s) 809, 911
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 170, 388
BsaWI WCCGGW 2 cut(s) 113, 257
BsaXI ACNNNNNCTCC 1 cut(s) 1018
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 316, 917
Bse1I ACTGG 2 cut(s) 310, 854
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 170, 388
BseGI GGATG 4 cut(s) 64, 138, 500, 998
BseLI CCNNNNNNNGG 3 cut(s) 120, 316, 917
BseMII CTCAG 1 cut(s) 974
BseNI ACTGG 2 cut(s) 310, 854
BseRI GAGGAG 2 cut(s) 92, 503
BseXI GCAGC 4 cut(s) 271, 339, 862, 866
BsgI GTGCAG 1 cut(s) 861
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 6 cut(s) 302, 309, 393, 840, 891, 1024
BsiHKAI GWGCWC 2 cut(s) 84, 966
BsiSI CCGG 4 cut(s) 114, 258, 809, 911
BslFI GGGAC 2 cut(s) 29, 188
BslI CCNNNNNNNGG 3 cut(s) 120, 316, 917
BsmAI GTCTC 1 cut(s) 463
BsmFI GGGAC 2 cut(s) 29, 188
BsnI GGCC 6 cut(s) 302, 309, 393, 840, 891, 1024
Bsp1286I GDGCHC 4 cut(s) 84, 385, 782, 966
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 2 cut(s) 142, 340
BspANI GGCC 6 cut(s) 302, 309, 393, 840, 891, 1024
BspCNI CTCAG 1 cut(s) 975
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 4 cut(s) 714, 736, 952, 958
BspLI GGNNCC 1 cut(s) 202
BspMAI CTGCAG 2 cut(s) 289, 796
BspMI ACCTGC 1 cut(s) 683
BspPI GGATC 3 cut(s) 350, 416, 673
BspQI GCTCTTC 1 cut(s) 373
BsrI ACTGG 2 cut(s) 310, 854
BssECI CCNNGG 2 cut(s) 170, 388
BssNI GRCGYC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 69, 373
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 2 cut(s) 284, 333
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 1 cut(s) 983
BstDSI CCRYGG 2 cut(s) 170, 388
BstF5I GGATG 4 cut(s) 64, 138, 500, 998
BstFNI CGCG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 860
BstHHI GCGC 1 cut(s) 859
BstMAI GTCTC 1 cut(s) 463
BstMWI GCNNNNNNNGC 3 cut(s) 284, 333, 777
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 3 cut(s) 49, 807, 909
BstSFI CTRYAG 2 cut(s) 285, 792
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 271, 339, 862, 866
BstXI CCANNNNNNTGG 1 cut(s) 728
BsuI GTATCC 2 cut(s) 121, 261
BsuRI GGCC 6 cut(s) 302, 309, 393, 840, 891, 1024
BtgI CCRYGG 2 cut(s) 170, 388
BtsCI GGATG 4 cut(s) 64, 138, 500, 998
BtsIMutI CAGTG 2 cut(s) 303, 450
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 1 cut(s) 338
CaiI CAGNNNCTG 1 cut(s) 333
CciI TCATGA 4 cut(s) 714, 736, 952, 958
CfoI GCGC 1 cut(s) 859
Cfr13I GGNCC 1 cut(s) 672
Csp6I GTAC 2 cut(s) 91, 933
CviQI GTAC 2 cut(s) 91, 933
DdeI CTNAG 1 cut(s) 983
EaeI YGGCCR 3 cut(s) 307, 391, 889
Eam1104I CTCTTC 2 cut(s) 69, 373
EarI CTCTTC 2 cut(s) 69, 373
Ecl136II GAGCTC 2 cut(s) 82, 964
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 4 cut(s) 84, 385, 782, 966
Eco47I GGWCC 1 cut(s) 672
Eco47III AGCGCT 1 cut(s) 858
Eco53kI GAGCTC 2 cut(s) 82, 964
Eco57I CTGAAG 2 cut(s) 214, 913
EcoICRI GAGCTC 2 cut(s) 82, 964
EcoO109I RGGNCCY 1 cut(s) 672
EcoRI GAATTC 1 cut(s) 994
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 170
EcoT38I GRGCYC 4 cut(s) 84, 385, 782, 966
ErhI CCWWGG 1 cut(s) 170
FaqI GGGAC 2 cut(s) 29, 188
FbaI TGATCA 2 cut(s) 937, 955
Fnu4HI GCNGC 4 cut(s) 285, 328, 855, 876
FokI GGATG 4 cut(s) 51, 125, 507, 985
FriOI GRGCYC 4 cut(s) 84, 385, 782, 966
Fsp4HI GCNGC 4 cut(s) 285, 328, 855, 876
FspBI CTAG 3 cut(s) 441, 768, 773
GlaI GCGC 1 cut(s) 858
GluI GCNGC 4 cut(s) 285, 328, 855, 876
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 860
HaeIII GGCC 6 cut(s) 302, 309, 393, 840, 891, 1024
HapII CCGG 4 cut(s) 114, 258, 809, 911
HhaI GCGC 1 cut(s) 859
Hin1I GRCGYC 1 cut(s) 177
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HinfI GANTC 5 cut(s) 426, 447, 510, 760, 914
HpaII CCGG 4 cut(s) 114, 258, 809, 911
HphI GGTGA 3 cut(s) 331, 835, 932
Hpy166II GTNNAC 2 cut(s) 28, 829
Hpy188I TCNGA 4 cut(s) 59, 120, 403, 984
Hpy188III TCNNGA 9 cut(s) 131, 295, 485, 517, 715, 737, 757, 953, 959
Hpy8I GTNNAC 2 cut(s) 28, 829
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 2 cut(s) 100, 292
HpyCH4IV ACGT 2 cut(s) 177, 1008
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 333, 777
HpyF3I CTNAG 1 cut(s) 983
HpySE526I ACGT 2 cut(s) 177, 1008
Hsp92I GRCGYC 1 cut(s) 177
HspAI GCGC 1 cut(s) 857
Ksp22I TGATCA 2 cut(s) 937, 955
LguI GCTCTTC 1 cut(s) 373
LmnI GCTCC 3 cut(s) 79, 969, 1039
Lsp1109I GCAGC 4 cut(s) 271, 339, 862, 866
LweI GCATC 1 cut(s) 488
MaeI CTAG 3 cut(s) 441, 768, 773
MaeII ACGT 2 cut(s) 177, 1008
MboII GAAGA 8 cut(s) 86, 115, 220, 390, 505, 521, 532, 755
MhlI GDGCHC 4 cut(s) 84, 385, 782, 966
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 3 cut(s) 552, 968, 994
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 92
Mox20I TGGCCA 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 926
MscI TGGCCA 1 cut(s) 393
MseI TTAA 1 cut(s) 710
MslI CAYNNNNRTG 4 cut(s) 726, 741, 957, 1042
Msp20I TGGCCA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 4 cut(s) 114, 258, 809, 911
MspR9I CCNGG 3 cut(s) 51, 809, 911
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 284, 333, 777
NciI CCSGG 2 cut(s) 809, 911
NcoI CCATGG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 202
NmeAIII GCCGAG 1 cut(s) 917
PagI TCATGA 4 cut(s) 714, 736, 952, 958
PciSI GCTCTTC 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 926
PfeI GAWTC 4 cut(s) 447, 510, 760, 914
PkrI GCNGC 4 cut(s) 286, 329, 856, 877
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
PpuMI RGGWCCY 1 cut(s) 672
PshBI ATTAAT 1 cut(s) 710
PsiI TTATAA 1 cut(s) 624
Psp124BI GAGCTC 2 cut(s) 84, 966
Psp5II RGGWCCY 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 672
PspPPI RGGWCCY 1 cut(s) 672
PstI CTGCAG 2 cut(s) 289, 796
PstNI CAGNNNCTG 1 cut(s) 333
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 2 cut(s) 92, 934
RsaNI GTAC 2 cut(s) 91, 933
RseI CAYNNNNRTG 4 cut(s) 726, 741, 957, 1042
SacI GAGCTC 2 cut(s) 84, 966
SapI GCTCTTC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 710
SatI GCNGC 4 cut(s) 285, 328, 855, 876
Sau96I GGNCC 1 cut(s) 672
ScaI AGTACT 2 cut(s) 92, 934
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 3 cut(s) 51, 809, 911
SduI GDGCHC 4 cut(s) 84, 385, 782, 966
SfaNI GCATC 1 cut(s) 488
SfcI CTRYAG 2 cut(s) 285, 792
SinI GGWCC 1 cut(s) 672
SmiMI CAYNNNNRTG 4 cut(s) 726, 741, 957, 1042
SmlI CTYRAG 3 cut(s) 39, 97, 483
SmoI CTYRAG 3 cut(s) 39, 97, 483
Sse9I AATT 3 cut(s) 552, 968, 994
SsiI CCGC 2 cut(s) 142, 340
SspI AATATT 1 cut(s) 592
SspMI CTAG 3 cut(s) 441, 768, 773
SstI GAGCTC 2 cut(s) 84, 966
StyD4I CCNGG 3 cut(s) 49, 807, 909
StyI CCWWGG 1 cut(s) 170
TaiI ACGT 2 cut(s) 180, 1011
TaqI TCGA 6 cut(s) 132, 150, 429, 885, 992, 1014
TasI AATT 3 cut(s) 552, 968, 994
TatI WGTACW 2 cut(s) 90, 932
TfiI GAWTC 4 cut(s) 447, 510, 760, 914
Tru1I TTAA 1 cut(s) 710
Tru9I TTAA 1 cut(s) 710
TscAI CASTG 2 cut(s) 310, 457
TseI GCWGC 4 cut(s) 284, 327, 854, 875
TspDTI ATGAA 8 cut(s) 53, 561, 603, 708, 716, 725, 731, 987
TspGWI ACGGA 1 cut(s) 451
TspRI CASTG 2 cut(s) 310, 457
VpaK11BI GGWCC 1 cut(s) 672
VspI ATTAAT 1 cut(s) 710
XapI RAATTY 1 cut(s) 994
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 926
XspI CTAG 3 cut(s) 441, 768, 773
ZraI GACGTC 1 cut(s) 178
ZrmI AGTACT 2 cut(s) 92, 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.