MD07G1158300.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0005503
Physical Location & Seq
Reverse (-)
23095230 .. 23097200
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1158300.v1.1.491

Sequence Viewer

Length: 1269 bp
ATGGCGCCTGAAAACATGAGTATATCTGTAAATGGGCAATCTCAAGTCCCTCCTGGATTCAGATTTCATCCAACCGAAGAGGAACTCTTGCAGTACTACTTGAAGAAGAAGGTTTCAAATCAGAGGATTGATCTCGATGTCATTCGTGATGTCGATCTCAATAAGCTTGAGCCATGGGATATACAAGAGAAATGTAAGATAGGAACTACACCGCAGAATGATTGGTATTTCTTCAGCCATAAGGACAAGAAGTACCCGACTGGAACACGAACAAATCGTGCAACTGCTGCCGGATTCTGGAAGGCAACCGGCCGTGATAAAGTGATATGCAGCAACTGCAGGCGTATCGGTATGCGGAAGACTCTGGTGTTCTACAAAGGCCGAGCTCCCCATGGCCAAAAGTCTGATTGGATCATGCATGAATATAGACTCGACGACAATAATACTAGCAATTGCAATATCACTAATGTGTCCACAGTTATGGGAGAGGCAGCACAAGATGAGGGATGGGTGGTTTGCCGAATCTTCAAGAAGAAAAACCTCCACAAAAGTTTGAGCAGCCCAATCTTGAGTACTACTACTTCATCCATCACAACAGAAACAAGAAGTGGCCAATCACTGTTTGATTCGTGCCCCGAGGGAACTTTGGAGCAAATACTTCAATACATGGAAAGGACATGCAAGGAAGAAGAGAATGAAGCCTACATTAACAATATTAGCACAAGATTTAACCTCCAACCAATCAACACTGGCATTAGTAATACTACCAATCACAATGGCTTCCATGAGAGGTTCTTGAAACTTCCAACCCTAGACAGCCCAAACTCCACAAGCAGCCAGGATTGTTACCAACCAAACATTCATGAGGAGATGATGGTCACAGAGAAGAATAATGACCAGGTGAGTCCCTTCACTGATAATCATCAAAACATGGATTATAATGCACACCACATGGACTCAGGACTCACCAGCTGGGAAGCTCTCGACCACCTTGTAGCTTCACAGCTCAATGGACAAACCGAAGCCTCTAGGCAATTAGCTTGTTTCAGCTCTGACCCCCACAACACTATTGTTTATGACAACGATGATCATGATCATGAACTCCAATTACCAAGTACCCTACGAGGATCATTGTCTTCATCCAATAAATCCTACCATCCCACTCACCATTACAACAACAGCGAATTCGACCTGTGGAATTTCGATCGACGATCAGCATCGTTGTCATCCTCCGACACGCTGTGCCACGTGTCGACCGGTCCTATATAA

Protein Analysis

423

Amino Acids

48.16

Weight (kDa)

5.94

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 144 4.3e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 1253
AciI CCGC 2 cut(s) 212, 355
AclWI GGATC 2 cut(s) 419, 1135
AcoI YGGCCR 3 cut(s) 310, 394, 610
AcsI RAATTY 2 cut(s) 1184, 1198
AcuI CTGAAG 1 cut(s) 217
AcvI CACGTG 1 cut(s) 1249
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 1242
AfaI GTAC 4 cut(s) 95, 254, 574, 1117
AfiI CCNNNNNNNGG 1 cut(s) 297
AflIII ACRYGT 1 cut(s) 1248
AgeI ACCGGT 1 cut(s) 1256
AgsI TTSAA 5 cut(s) 103, 117, 529, 662, 799
AjnI CCWGG 3 cut(s) 52, 837, 897
AjuI GAANNNNNNNTTGG 2 cut(s) 843, 875
AleI CACNNNNGTG 1 cut(s) 467
AluBI AGCT 8 cut(s) 166, 386, 972, 980, 998, 1006, 1040, 1050
AluI AGCT 8 cut(s) 166, 386, 972, 980, 998, 1006, 1040, 1050
Alw21I GWGCWC 1 cut(s) 388
AlwI GGATC 2 cut(s) 419, 1135
AlwNI CAGNNNCTG 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 4 cut(s) 310, 379, 394, 610
ApeKI GCWGC 5 cut(s) 287, 330, 491, 558, 834
ApoI RAATTY 2 cut(s) 1184, 1198
AsiGI ACCGGT 1 cut(s) 1256
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 1259
AsuHPI GGTGA 3 cut(s) 913, 958, 1157
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 1 cut(s) 1259
BaeGI GKGCMC 1 cut(s) 635
BalI TGGCCA 2 cut(s) 396, 612
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 388
BarI GAAGNNNNNNTAC 2 cut(s) 565, 597
BbrPI CACGTG 1 cut(s) 1249
BbsI GAAGAC 2 cut(s) 365, 1128
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 5 cut(s) 274, 342, 503, 570, 846
BccI CCATC 4 cut(s) 501, 596, 868, 1164
BceAI ACGGC 1 cut(s) 297
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BciT130I CCWGG 3 cut(s) 54, 839, 899
BclI TGATCA 2 cut(s) 1087, 1093
BfaI CTAG 3 cut(s) 447, 812, 1029
BfmI CTRYAG 1 cut(s) 337
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 5 cut(s) 288, 331, 492, 559, 835
BlsI GCNGC 5 cut(s) 289, 332, 493, 560, 836
BmcAI AGTACT 2 cut(s) 95, 574
Bme1390I CCNGG 3 cut(s) 54, 839, 899
Bme18I GGWCC 1 cut(s) 1259
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 1259
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 3 cut(s) 54, 839, 899
BmsI GCATC 1 cut(s) 1226
BpiI GAAGAC 2 cut(s) 365, 1128
BpuEI CTTGAG 3 cut(s) 27, 188, 589
BsaAI YACGTR 1 cut(s) 1249
BsaBI GATNNNNATC 4 cut(s) 153, 921, 1092, 1216
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 173, 391, 636
BsaWI WCCGGW 1 cut(s) 1256
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse118I RCCGGY 2 cut(s) 308, 1256
Bse1I ACTGG 2 cut(s) 265, 754
Bse8I GATNNNNATC 4 cut(s) 153, 921, 1092, 1216
BseBI CCWGG 3 cut(s) 54, 839, 899
BseDI CCNNGG 3 cut(s) 173, 391, 636
BseGI GGATG 6 cut(s) 67, 512, 584, 1139, 1156, 1226
BseJI GATNNNNATC 4 cut(s) 153, 921, 1092, 1216
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 972
BseNI ACTGG 2 cut(s) 265, 754
BseRI GAGGAG 1 cut(s) 881
BseSI GKGCMC 1 cut(s) 635
BseX3I CGGCCG 1 cut(s) 310
BseXI GCAGC 5 cut(s) 274, 342, 503, 570, 846
BseYI CCCAGC 1 cut(s) 972
Bsh1285I CGRYCG 3 cut(s) 313, 1207, 1257
BshFI GGCC 4 cut(s) 312, 381, 396, 612
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 1256
BsiEI CGRYCG 3 cut(s) 313, 1207, 1257
BsiHKAI GWGCWC 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 3 cut(s) 291, 309, 1257
BslFI GGGAC 2 cut(s) 32, 891
BslI CCNNNNNNNGG 1 cut(s) 297
BsmFI GGGAC 2 cut(s) 32, 891
BsnI GGCC 4 cut(s) 312, 381, 396, 612
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 2 cut(s) 388, 635
Bsp143I GATC 8 cut(s) 130, 154, 411, 1087, 1093, 1127, 1204, 1211
Bsp19I CCATGG 2 cut(s) 173, 391
BspACI CCGC 2 cut(s) 212, 355
BspANI GGCC 4 cut(s) 312, 381, 396, 612
BspCNI CTCAG 1 cut(s) 971
BspHI TCATGA 3 cut(s) 862, 1090, 1096
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 341
BspPI GGATC 2 cut(s) 419, 1135
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 2 cut(s) 308, 1256
BsrI ACTGG 2 cut(s) 265, 754
BssAI RCCGGY 2 cut(s) 308, 1256
BssECI CCNNGG 3 cut(s) 173, 391, 636
BssMI GATC 8 cut(s) 130, 154, 411, 1087, 1093, 1127, 1204, 1211
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 173, 391
Bst2UI CCWGG 3 cut(s) 54, 839, 899
Bst4CI ACNGT 2 cut(s) 478, 621
Bst6I CTCTTC 2 cut(s) 72, 684
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 287, 336
BstBAI YACGTR 1 cut(s) 1249
BstC8I GCNNGC 1 cut(s) 341
BstDEI CTNAG 1 cut(s) 958
BstDSI CCRYGG 2 cut(s) 173, 391
BstF5I GGATG 6 cut(s) 67, 512, 584, 1139, 1156, 1226
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 8 cut(s) 133, 157, 414, 1090, 1096, 1130, 1207, 1214
BstMBI GATC 8 cut(s) 130, 154, 411, 1087, 1093, 1127, 1204, 1211
BstMCI CGRYCG 3 cut(s) 313, 1207, 1257
BstMWI GCNNNNNNNGC 2 cut(s) 287, 336
BstNI CCWGG 3 cut(s) 54, 839, 899
BstNSI RCATGY 1 cut(s) 681
BstSCI CCNGG 3 cut(s) 52, 837, 897
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 635
BstV1I GCAGC 5 cut(s) 274, 342, 503, 570, 846
BstV2I GAAGAC 2 cut(s) 365, 1128
BstXI CCANNNNNNTGG 1 cut(s) 481
BstZI CGGCCG 1 cut(s) 310
BsuRI GGCC 4 cut(s) 312, 381, 396, 612
BtgI CCRYGG 2 cut(s) 173, 391
BtsCI GGATG 6 cut(s) 67, 512, 584, 1139, 1156, 1226
BtsIMutI CAGTG 3 cut(s) 617, 747, 912
Cac8I GCNNGC 1 cut(s) 341
CaiI CAGNNNCTG 1 cut(s) 336
CciI TCATGA 3 cut(s) 862, 1090, 1096
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 308, 1256
Cfr13I GGNCC 1 cut(s) 1259
CsiI ACCWGGT 1 cut(s) 897
Csp6I GTAC 4 cut(s) 94, 253, 573, 1116
CspAI ACCGGT 1 cut(s) 1256
CviQI GTAC 4 cut(s) 94, 253, 573, 1116
DdeI CTNAG 1 cut(s) 958
DinI GGCGCC 1 cut(s) 6
DpnI GATC 8 cut(s) 132, 156, 413, 1089, 1095, 1129, 1206, 1213
DpnII GATC 8 cut(s) 130, 154, 411, 1087, 1093, 1127, 1204, 1211
DraIII CACNNNGTG 1 cut(s) 1242
EaeI YGGCCR 3 cut(s) 310, 394, 610
EagI CGGCCG 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 72, 684
EarI CTCTTC 2 cut(s) 72, 684
Ecl136II GAGCTC 1 cut(s) 386
EclXI CGGCCG 1 cut(s) 310
Eco130I CCWWGG 2 cut(s) 173, 391
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 1259
Eco52I CGGCCG 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 217
Eco72I CACGTG 1 cut(s) 1249
Eco88I CYCGRG 1 cut(s) 635
EcoICRI GAGCTC 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 1184
EcoRII CCWGG 3 cut(s) 52, 837, 897
EcoT14I CCWWGG 2 cut(s) 173, 391
EcoT22I ATGCAT 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 388
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 173, 391
FaqI GGGAC 2 cut(s) 32, 891
FbaI TGATCA 2 cut(s) 1087, 1093
FblI GTMKAC 1 cut(s) 1253
Fnu4HI GCNGC 5 cut(s) 288, 331, 492, 559, 835
FokI GGATG 6 cut(s) 54, 519, 571, 1126, 1143, 1213
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 5 cut(s) 288, 331, 492, 559, 835
FspBI CTAG 3 cut(s) 447, 812, 1029
GlaI GCGC 1 cut(s) 6
GluI GCNGC 5 cut(s) 288, 331, 492, 559, 835
GsaI CCCAGC 1 cut(s) 976
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 312, 381, 396, 612
HapII CCGG 3 cut(s) 291, 309, 1257
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 1254
HindII GTYRAC 1 cut(s) 1254
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 9 cut(s) 57, 294, 361, 429, 522, 626, 904, 956, 963
HpaII CCGG 3 cut(s) 291, 309, 1257
HphI GGTGA 3 cut(s) 913, 958, 1157
Hpy166II GTNNAC 2 cut(s) 474, 1254
Hpy188I TCNGA 5 cut(s) 62, 123, 406, 1054, 1234
Hpy8I GTNNAC 2 cut(s) 474, 1254
Hpy99I CGWCG 2 cut(s) 437, 1212
HpyAV CCTTC 3 cut(s) 103, 295, 919
HpyCH4III ACNGT 2 cut(s) 478, 621
HpyCH4IV ACGT 1 cut(s) 1248
HpyCH4V TGCA 8 cut(s) 91, 281, 330, 339, 418, 456, 681, 944
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 336
HpyF3I CTNAG 1 cut(s) 958
HpySE526I ACGT 1 cut(s) 1248
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 2 cut(s) 1087, 1093
Kzo9I GATC 8 cut(s) 130, 154, 411, 1087, 1093, 1127, 1204, 1211
LmnI GCTCC 2 cut(s) 391, 649
Lsp1109I GCAGC 5 cut(s) 274, 342, 503, 570, 846
LweI GCATC 1 cut(s) 1226
MabI ACCWGGT 1 cut(s) 897
MaeI CTAG 3 cut(s) 447, 812, 1029
MaeII ACGT 1 cut(s) 1248
MaeIII GTNAC 2 cut(s) 845, 877
MalI GATC 8 cut(s) 132, 156, 413, 1089, 1095, 1129, 1206, 1213
MboI GATC 8 cut(s) 130, 154, 411, 1087, 1093, 1127, 1204, 1211
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 388, 635
MlsI TGGCCA 2 cut(s) 396, 612
MluCI AATT 5 cut(s) 451, 1034, 1106, 1184, 1198
MluNI TGGCCA 2 cut(s) 396, 612
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 5 cut(s) 355, 423, 913, 950, 957
MmeI TCCRAC 4 cut(s) 95, 760, 830, 1257
Mox20I TGGCCA 2 cut(s) 396, 612
Mph1103I ATGCAT 1 cut(s) 420
MscI TGGCCA 2 cut(s) 396, 612
MseI TTAA 2 cut(s) 708, 729
MslI CAYNNNNRTG 3 cut(s) 467, 479, 1095
Msp20I TGGCCA 2 cut(s) 396, 612
MspA1I CMGCKG 1 cut(s) 972
MspI CCGG 3 cut(s) 291, 309, 1257
MspR9I CCNGG 3 cut(s) 54, 839, 899
MunI CAATTG 1 cut(s) 451
MvaI CCWGG 3 cut(s) 54, 839, 899
MwoI GCNNNNNNNGC 2 cut(s) 287, 336
NarI GGCGCC 1 cut(s) 5
NcoI CCATGG 2 cut(s) 173, 391
NdeII GATC 8 cut(s) 130, 154, 411, 1087, 1093, 1127, 1204, 1211
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 407
NmuCI GTSAC 1 cut(s) 877
NsiI ATGCAT 1 cut(s) 420
NspI RCATGY 1 cut(s) 681
OliI CACNNNNGTG 1 cut(s) 467
PagI TCATGA 3 cut(s) 862, 1090, 1096
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PfeI GAWTC 4 cut(s) 57, 294, 522, 626
PfoI TCCNGGA 1 cut(s) 52
PinAI ACCGGT 1 cut(s) 1256
PkrI GCNGC 5 cut(s) 289, 332, 493, 560, 836
Ple19I CGATCG 1 cut(s) 1207
PleI GAGTC 5 cut(s) 355, 423, 912, 950, 957
PluTI GGCGCC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 1249
PmlI CACGTG 1 cut(s) 1249
PpsI GAGTC 5 cut(s) 355, 423, 912, 950, 957
Ppu21I YACGTR 1 cut(s) 1249
PsiI TTATAA 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 388
Psp6I CCWGG 3 cut(s) 52, 837, 897
PspCI CACGTG 1 cut(s) 1249
PspFI CCCAGC 1 cut(s) 972
PspGI CCWGG 3 cut(s) 52, 837, 897
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 1259
PsrI GAACNNNNNNTAC 2 cut(s) 1092, 1124
PstI CTGCAG 1 cut(s) 341
PstNI CAGNNNCTG 1 cut(s) 336
PvuI CGATCG 1 cut(s) 1207
PvuII CAGCTG 1 cut(s) 972
RsaI GTAC 4 cut(s) 95, 254, 574, 1117
RsaNI GTAC 4 cut(s) 94, 253, 573, 1116
RseI CAYNNNNRTG 3 cut(s) 467, 479, 1095
SacI GAGCTC 1 cut(s) 388
SalI GTCGAC 1 cut(s) 1252
SaqAI TTAA 2 cut(s) 708, 729
SatI GCNGC 5 cut(s) 288, 331, 492, 559, 835
Sau3AI GATC 8 cut(s) 130, 154, 411, 1087, 1093, 1127, 1204, 1211
Sau96I GGNCC 1 cut(s) 1259
ScaI AGTACT 2 cut(s) 95, 574
SchI GAGTC 5 cut(s) 355, 423, 913, 950, 957
ScrFI CCNGG 3 cut(s) 54, 839, 899
SduI GDGCHC 2 cut(s) 388, 635
SexAI ACCWGGT 1 cut(s) 897
SfaNI GCATC 1 cut(s) 1226
SfcI CTRYAG 1 cut(s) 337
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 1259
SmiMI CAYNNNNRTG 3 cut(s) 467, 479, 1095
SmlI CTYRAG 3 cut(s) 42, 167, 568
SmoI CTYRAG 3 cut(s) 42, 167, 568
Sse9I AATT 5 cut(s) 451, 1034, 1106, 1184, 1198
SsiI CCGC 2 cut(s) 212, 355
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 715
SspMI CTAG 3 cut(s) 447, 812, 1029
SstI GAGCTC 1 cut(s) 388
StyD4I CCNGG 3 cut(s) 52, 837, 897
StyI CCWWGG 2 cut(s) 173, 391
TaaI ACNGT 2 cut(s) 478, 621
TaiI ACGT 1 cut(s) 1251
TaqI TCGA 8 cut(s) 135, 153, 432, 984, 1188, 1203, 1207, 1253
TasI AATT 5 cut(s) 451, 1034, 1106, 1184, 1198
TatI WGTACW 2 cut(s) 93, 572
TfiI GAWTC 4 cut(s) 57, 294, 522, 626
Tru1I TTAA 2 cut(s) 708, 729
Tru9I TTAA 2 cut(s) 708, 729
TscAI CASTG 3 cut(s) 624, 754, 919
TseFI GTSAC 1 cut(s) 877
TseI GCWGC 5 cut(s) 287, 330, 491, 558, 834
Tsp45I GTSAC 1 cut(s) 877
TspDTI ATGAA 7 cut(s) 56, 435, 573, 711, 851, 1113, 1128
TspRI CASTG 3 cut(s) 624, 754, 919
VpaK11BI GGWCC 1 cut(s) 1259
XapI RAATTY 2 cut(s) 1184, 1198
XceI RCATGY 1 cut(s) 681
XmiI GTMKAC 1 cut(s) 1253
XspI CTAG 3 cut(s) 447, 812, 1029
ZrmI AGTACT 2 cut(s) 95, 574
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.