MD01G1088100.v1.1
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
19822262 .. 19832947
10686 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1088100.v1.1.491

Sequence Viewer

Length: 1530 bp
ATGTATATTCTCTCCCTCCTCGTCCAACGACGTATATATATAGTACTCCCTCATAATCTTTGCGTAACCAACTTAGTTGTTATTACATCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTATATATATAGTCCTCCCCCATATTCTTTGCGTACACCAACTTATACTCCTCCATCTCATCGTTTTAACTGCTTATATTATTTTGGATTCTTCAAAAGAAGATTCCAGAAAGCTTTCATGTTTGTTAATCAAAATGGCGCCTGAAAACATGAGCATATCTGTAAATGGGCAATCTCAAGTCCCTCCTGGTTTCAGATTTCATCCAACCGAAGAGGAACTCTTGCAGTACTACTTGAAGAAGAAGGCTTCAAATCAGAGGATTGATCTCAATGTCATACGTGAAGTCGATCTCAATAAGCTTGAGCCATGGGATATACAAGAGAAGTGTAAGATAGGAACTACACCACAGAATGATTGGTATTTTTTCAGCCATAAAGACAAGAAGTACCCGACTGGAACACGAACAAATCGTGCAACTGCTGCCGGATTCTGGAAGGCAACTGGCCGTGATAAAGTGATATGTAGCAACTGCAGGCGGATCGGTATGAGGAAGACCCTTGTGTTCTACAAAGGCCGAGCTCCCCATGGCCAAAAGTCTGATTGGATCATGCATGAATATAGACTCGACGACAATAATACTAGCAATTACAGTATCAGTAATGTACCCACAGTTGTGGGAGATGCAGCACAAGAAGAGGGATGGGTGGTTTGCCGAATTTTCAAGAAGAAAAACCTCCACAGAAGTTTGAGCAGCCCAATTTTGAGTCCTACTACATCCATCACATCGGAAACAAAAAGTGGCCAATCACTGTTTGATTCGTGTCCCGACGGAGCTTTGGAGCAAATAATTCAATACATGGGAAGGGCATGCAAGGAAGAAGAGAATGAAGCCTACATTAGCAATAATAGCACAAGATTTAACCTCCAACCAATCAACACAGGCATTAGTAATACTATTAATCATATTGGCTTCCATGAGAGGTTCTTGAAACTTCCGACCCTAGACAGCCCAAACTCCACAAGCAGCCAGGATTGTTACCAACCAAACATTCATGAGGAGATGATGGTCACAGAGGTTAATAACAACCAGATGAGTCCTTTCACTGATCATCACCAAAACATGGATTACCATGCACACCACATGGACTCAGGACTCACCAACTGGGCAACTTTTGACCGCCTTGTGGCTTCACAACTCAATGGACAAACCGAGACCTCTAGGCAATTAGCTTGTTTCATCACTGACCCCCGCAACACTATTTCTTATGACAATGATGATCATGATCATGAACTTCAATTACGAAGTACCCTACGAGGATCGTTGTCTTCACCCAACAAATCCTACCAGGCCACACACGACTACAACAACAGCGCGATCGACCTGTGGAATTTCGATCGACAATCATCATCGTTGTCATCCTCCGACAAGCTGTGCCACGTTAGTATAAACATGTATGTTAGATAA

Protein Analysis

510

Amino Acids

58.07

Weight (kDa)

7.05

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 103 - 230 1.3e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AccB7I CCANNNNNTGG 1 cut(s) 1186
AccII CGCG 1 cut(s) 1439
AciI CCGC 3 cut(s) 601, 1243, 1315
AclWI GGATC 3 cut(s) 611, 677, 1390
AcoI YGGCCR 3 cut(s) 568, 652, 865
AcsI RAATTY 2 cut(s) 780, 1453
AcyI GRCGYC 1 cut(s) 263
AfaI GTAC 6 cut(s) 45, 159, 353, 512, 729, 1372
AfiI CCNNNNNNNGG 3 cut(s) 555, 1186, 1249
AflIII ACRYGT 1 cut(s) 1515
AgsI TTSAA 7 cut(s) 219, 361, 375, 787, 917, 1054, 1361
AjnI CCWGG 3 cut(s) 310, 1092, 1410
AjuI GAANNNNNNNTTGG 2 cut(s) 1098, 1130
AleI CACNNNNGTG 1 cut(s) 737
AluBI AGCT 6 cut(s) 238, 424, 644, 899, 1295, 1495
AluI AGCT 6 cut(s) 238, 424, 644, 899, 1295, 1495
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 1 cut(s) 1271
AlwI GGATC 3 cut(s) 611, 677, 1390
AoxI GGCC 5 cut(s) 568, 637, 652, 865, 1413
ApeKI GCWGC 4 cut(s) 545, 749, 816, 1089
ApoI RAATTY 2 cut(s) 780, 1453
AseI ATTAAT 1 cut(s) 1023
Asp700I GAANNNNTTC 1 cut(s) 238
AspLEI GCGC 2 cut(s) 265, 1439
AsuHPI GGTGA 3 cut(s) 1169, 1213, 1386
BalI TGGCCA 2 cut(s) 654, 867
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 646
BbsI GAAGAC 2 cut(s) 623, 1383
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 4 cut(s) 532, 761, 828, 1101
BccI CCATC 4 cut(s) 186, 759, 851, 1123
BceAI ACGGC 1 cut(s) 555
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BciT130I CCWGG 3 cut(s) 312, 1094, 1412
BclI TGATCA 3 cut(s) 1171, 1342, 1348
BcoDI GTCTC 1 cut(s) 1271
BfaI CTAG 3 cut(s) 705, 1067, 1284
BfmI CTRYAG 1 cut(s) 595
BfoI RGCGCY 1 cut(s) 266
BisI GCNGC 4 cut(s) 546, 750, 817, 1090
BlsI GCNGC 4 cut(s) 547, 751, 818, 1091
BmcAI AGTACT 2 cut(s) 45, 353
Bme1390I CCNGG 3 cut(s) 312, 1094, 1412
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 3 cut(s) 312, 1094, 1412
BmrI ACTGGG 1 cut(s) 1237
BmsI GCATC 1 cut(s) 736
BmuI ACTGGG 1 cut(s) 1237
BpiI GAAGAC 2 cut(s) 623, 1383
BpuEI CTTGAG 2 cut(s) 285, 446
BsaAI YACGTR 1 cut(s) 404
BsaBI GATNNNNATC 1 cut(s) 1347
BsaHI GRCGYC 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 1271
BsaJI CCNNGG 2 cut(s) 431, 649
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 3 cut(s) 555, 1186, 1249
Bse1I ACTGG 3 cut(s) 523, 571, 1232
Bse8I GATNNNNATC 1 cut(s) 1347
BseBI CCWGG 3 cut(s) 312, 1094, 1412
BseDI CCNNGG 2 cut(s) 431, 649
BseGI GGATG 5 cut(s) 86, 325, 770, 839, 1481
BseJI GATNNNNATC 1 cut(s) 1347
BseLI CCNNNNNNNGG 3 cut(s) 555, 1186, 1249
BseMII CTCAG 2 cut(s) 136, 1227
BseNI ACTGG 3 cut(s) 523, 571, 1232
BseRI GAGGAG 4 cut(s) 8, 82, 164, 1136
BseXI GCAGC 4 cut(s) 532, 761, 828, 1101
Bsh1236I CGCG 1 cut(s) 1439
Bsh1285I CGRYCG 2 cut(s) 1443, 1462
BshFI GGCC 5 cut(s) 570, 639, 654, 867, 1415
BshNI GGYRCC 1 cut(s) 262
BsiEI CGRYCG 2 cut(s) 1443, 1462
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 1 cut(s) 549
BslFI GGGAC 2 cut(s) 290, 873
BslI CCNNNNNNNGG 3 cut(s) 555, 1186, 1249
BsmAI GTCTC 1 cut(s) 1271
BsmFI GGGAC 2 cut(s) 290, 873
BsnI GGCC 5 cut(s) 570, 639, 654, 867, 1415
Bso31I GGTCTC 1 cut(s) 1271
Bsp1286I GDGCHC 1 cut(s) 646
Bsp19I CCATGG 2 cut(s) 431, 649
BspACI CCGC 3 cut(s) 601, 1243, 1315
BspANI GGCC 5 cut(s) 570, 639, 654, 867, 1415
BspCNI CTCAG 2 cut(s) 135, 1226
BspFNI CGCG 1 cut(s) 1439
BspHI TCATGA 3 cut(s) 1117, 1345, 1351
BspLI GGNNCC 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 599
BspPI GGATC 3 cut(s) 611, 677, 1390
BspT107I GGYRCC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 1271
BsrI ACTGG 3 cut(s) 523, 571, 1232
BssECI CCNNGG 2 cut(s) 431, 649
BssNI GRCGYC 1 cut(s) 263
BssT1I CCWWGG 2 cut(s) 431, 649
Bst2UI CCWGG 3 cut(s) 312, 1094, 1412
Bst4CI ACNGT 3 cut(s) 716, 736, 876
Bst6I CTCTTC 3 cut(s) 330, 753, 939
BstACI GRCGYC 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 545
BstBAI YACGTR 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 599, 934
BstDEI CTNAG 3 cut(s) 73, 122, 1213
BstDSI CCRYGG 2 cut(s) 431, 649
BstF5I GGATG 5 cut(s) 86, 325, 770, 839, 1481
BstFNI CGCG 1 cut(s) 1439
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 2 cut(s) 265, 1439
BstMAI GTCTC 1 cut(s) 1271
BstMCI CGRYCG 2 cut(s) 1443, 1462
BstMWI GCNNNNNNNGC 2 cut(s) 545, 972
BstNI CCWGG 3 cut(s) 312, 1094, 1412
BstNSI RCATGY 2 cut(s) 936, 1519
BstSCI CCNGG 3 cut(s) 310, 1092, 1410
BstSFI CTRYAG 1 cut(s) 595
BstUI CGCG 1 cut(s) 1439
BstV1I GCAGC 4 cut(s) 532, 761, 828, 1101
BstV2I GAAGAC 2 cut(s) 623, 1383
BstXI CCANNNNNNTGG 1 cut(s) 739
BsuRI GGCC 5 cut(s) 570, 639, 654, 867, 1415
BtgI CCRYGG 2 cut(s) 431, 649
BtsCI GGATG 5 cut(s) 86, 325, 770, 839, 1481
BtsIMutI CAGTG 3 cut(s) 872, 1167, 1305
Cac8I GCNNGC 2 cut(s) 599, 934
CciI TCATGA 3 cut(s) 1117, 1345, 1351
CfoI GCGC 2 cut(s) 265, 1439
Csp6I GTAC 6 cut(s) 44, 158, 352, 511, 728, 1371
CviQI GTAC 6 cut(s) 44, 158, 352, 511, 728, 1371
DdeI CTNAG 3 cut(s) 73, 122, 1213
DinI GGCGCC 1 cut(s) 264
EaeI YGGCCR 3 cut(s) 568, 652, 865
Eam1104I CTCTTC 3 cut(s) 330, 753, 939
EarI CTCTTC 3 cut(s) 330, 753, 939
EciI GGCGGA 1 cut(s) 616
Ecl136II GAGCTC 1 cut(s) 644
Eco130I CCWWGG 2 cut(s) 431, 649
Eco24I GRGCYC 1 cut(s) 646
Eco31I GGTCTC 1 cut(s) 1271
Eco53kI GAGCTC 1 cut(s) 644
EcoICRI GAGCTC 1 cut(s) 644
EcoRII CCWGG 3 cut(s) 310, 1092, 1410
EcoT14I CCWWGG 2 cut(s) 431, 649
EcoT22I ATGCAT 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 646
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
ErhI CCWWGG 2 cut(s) 431, 649
FaqI GGGAC 2 cut(s) 290, 873
FauI CCCGC 1 cut(s) 1322
FbaI TGATCA 3 cut(s) 1171, 1342, 1348
Fnu4HI GCNGC 4 cut(s) 546, 750, 817, 1090
FokI GGATG 5 cut(s) 73, 312, 777, 826, 1468
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 4 cut(s) 546, 750, 817, 1090
FspBI CTAG 3 cut(s) 705, 1067, 1284
GlaI GCGC 2 cut(s) 264, 1438
GluI GCNGC 4 cut(s) 546, 750, 817, 1090
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 5 cut(s) 570, 639, 654, 867, 1415
HapII CCGG 1 cut(s) 549
HhaI GCGC 2 cut(s) 265, 1439
Hin1I GRCGYC 1 cut(s) 263
Hin6I GCGC 2 cut(s) 263, 1437
HinP1I GCGC 2 cut(s) 263, 1437
HindIII AAGCTT 2 cut(s) 236, 422
HinfI GANTC 9 cut(s) 212, 227, 552, 687, 829, 881, 1159, 1211, 1218
HpaII CCGG 1 cut(s) 549
HphI GGTGA 3 cut(s) 1169, 1213, 1386
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 6 cut(s) 320, 381, 664, 853, 1062, 1489
Hpy188III TCNNGA 9 cut(s) 231, 556, 787, 890, 1051, 1118, 1215, 1346, 1352
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 3 cut(s) 33, 695, 896
HpyAV CCTTC 3 cut(s) 361, 553, 921
HpyCH4III ACNGT 3 cut(s) 716, 736, 876
HpyCH4IV ACGT 3 cut(s) 31, 403, 1503
HpyCH4V TGCA 7 cut(s) 349, 539, 597, 676, 749, 936, 1199
HpyF10VI GCNNNNNNNGC 2 cut(s) 545, 972
HpyF3I CTNAG 3 cut(s) 73, 122, 1213
HpySE526I ACGT 3 cut(s) 31, 403, 1503
Hsp92I GRCGYC 1 cut(s) 263
HspAI GCGC 2 cut(s) 263, 1437
KasI GGCGCC 1 cut(s) 262
Ksp22I TGATCA 3 cut(s) 1171, 1342, 1348
LmnI GCTCC 3 cut(s) 649, 896, 904
Lsp1109I GCAGC 4 cut(s) 532, 761, 828, 1101
LweI GCATC 1 cut(s) 736
MaeI CTAG 3 cut(s) 705, 1067, 1284
MaeII ACGT 3 cut(s) 31, 403, 1503
MaeIII GTNAC 3 cut(s) 64, 1100, 1132
MhlI GDGCHC 1 cut(s) 646
MlsI TGGCCA 2 cut(s) 654, 867
MluCI AATT 7 cut(s) 709, 780, 822, 912, 1289, 1361, 1453
MluNI TGGCCA 2 cut(s) 654, 867
Mly113I GGCGCC 1 cut(s) 263
MlyI GAGTC 5 cut(s) 681, 838, 1168, 1205, 1212
MmeI TCCRAC 5 cut(s) 49, 353, 1015, 1085, 1512
Mox20I TGGCCA 2 cut(s) 654, 867
Mph1103I ATGCAT 1 cut(s) 678
MroXI GAANNNNTTC 1 cut(s) 238
MscI TGGCCA 2 cut(s) 654, 867
MseI TTAA 5 cut(s) 191, 251, 984, 1023, 1143
MslI CAYNNNNRTG 2 cut(s) 737, 1350
Msp20I TGGCCA 2 cut(s) 654, 867
MspI CCGG 1 cut(s) 549
MspR9I CCNGG 3 cut(s) 312, 1094, 1412
MvaI CCWGG 3 cut(s) 312, 1094, 1412
MvnI CGCG 1 cut(s) 1439
MwoI GCNNNNNNNGC 2 cut(s) 545, 972
NarI GGCGCC 1 cut(s) 263
NcoI CCATGG 2 cut(s) 431, 649
NlaIV GGNNCC 1 cut(s) 264
NmeAIII GCCGAG 1 cut(s) 665
NmuCI GTSAC 1 cut(s) 1132
NsiI ATGCAT 1 cut(s) 678
NspI RCATGY 2 cut(s) 936, 1519
OliI CACNNNNGTG 1 cut(s) 737
PaeI GCATGC 1 cut(s) 936
PagI TCATGA 3 cut(s) 1117, 1345, 1351
PciI ACATGT 1 cut(s) 1515
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 238
PfeI GAWTC 4 cut(s) 212, 227, 552, 881
PflMI CCANNNNNTGG 1 cut(s) 1186
PkrI GCNGC 4 cut(s) 547, 751, 818, 1091
Ple19I CGATCG 2 cut(s) 1443, 1462
PleI GAGTC 5 cut(s) 681, 837, 1167, 1205, 1212
PluTI GGCGCC 1 cut(s) 266
PpsI GAGTC 5 cut(s) 681, 837, 1167, 1205, 1212
Ppu21I YACGTR 1 cut(s) 404
PscI ACATGT 1 cut(s) 1515
PshBI ATTAAT 1 cut(s) 1023
Psp124BI GAGCTC 1 cut(s) 646
Psp6I CCWGG 3 cut(s) 310, 1092, 1410
PspGI CCWGG 3 cut(s) 310, 1092, 1410
PspN4I GGNNCC 1 cut(s) 264
PsrI GAACNNNNNNTAC 2 cut(s) 1347, 1379
PstI CTGCAG 1 cut(s) 599
PvuI CGATCG 2 cut(s) 1443, 1462
RsaI GTAC 6 cut(s) 45, 159, 353, 512, 729, 1372
RsaNI GTAC 6 cut(s) 44, 158, 352, 511, 728, 1371
RseI CAYNNNNRTG 2 cut(s) 737, 1350
SacI GAGCTC 1 cut(s) 646
SaqAI TTAA 5 cut(s) 191, 251, 984, 1023, 1143
SatI GCNGC 4 cut(s) 546, 750, 817, 1090
ScaI AGTACT 2 cut(s) 45, 353
SchI GAGTC 5 cut(s) 681, 838, 1168, 1205, 1212
ScrFI CCNGG 3 cut(s) 312, 1094, 1412
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 1 cut(s) 736
SfcI CTRYAG 1 cut(s) 595
SfoI GGCGCC 1 cut(s) 264
SmiMI CAYNNNNRTG 2 cut(s) 737, 1350
SmlI CTYRAG 2 cut(s) 300, 425
SmoI CTYRAG 2 cut(s) 300, 425
SphI GCATGC 1 cut(s) 936
Sse9I AATT 7 cut(s) 709, 780, 822, 912, 1289, 1361, 1453
SsiI CCGC 3 cut(s) 601, 1243, 1315
SspDI GGCGCC 1 cut(s) 262
SspMI CTAG 3 cut(s) 705, 1067, 1284
SstI GAGCTC 1 cut(s) 646
StyD4I CCNGG 3 cut(s) 310, 1092, 1410
StyI CCWWGG 2 cut(s) 431, 649
TaaI ACNGT 3 cut(s) 716, 736, 876
TaiI ACGT 3 cut(s) 34, 406, 1506
TaqI TCGA 5 cut(s) 411, 690, 1443, 1458, 1462
TasI AATT 7 cut(s) 709, 780, 822, 912, 1289, 1361, 1453
TatI WGTACW 2 cut(s) 43, 351
TfiI GAWTC 4 cut(s) 212, 227, 552, 881
Tru1I TTAA 5 cut(s) 191, 251, 984, 1023, 1143
Tru9I TTAA 5 cut(s) 191, 251, 984, 1023, 1143
TscAI CASTG 3 cut(s) 879, 1174, 1312
TseFI GTSAC 1 cut(s) 1132
TseI GCWGC 4 cut(s) 545, 749, 816, 1089
Tsp45I GTSAC 1 cut(s) 1132
TspDTI ATGAA 7 cut(s) 231, 314, 693, 966, 1106, 1291, 1368
TspGWI ACGGA 1 cut(s) 909
TspRI CASTG 3 cut(s) 879, 1174, 1312
Van91I CCANNNNNTGG 1 cut(s) 1186
VspI ATTAAT 1 cut(s) 1023
XapI RAATTY 2 cut(s) 780, 1453
XceI RCATGY 2 cut(s) 936, 1519
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
XmnI GAANNNNTTC 1 cut(s) 238
XspI CTAG 3 cut(s) 705, 1067, 1284
ZrmI AGTACT 2 cut(s) 45, 353
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.