Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005503

Physical Location & Seq

Genomic Coordinates Forward (+)

15588904 .. 15590197

Gene Structure 1294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGACTGAAAGCATGAGTATATCTGTGAACGAGCAATCTCAAGTCCCTCCAGGTTTCAGATTTCATCCAACCGAAGAGGAGCTCTTGCAGTACTACTTGAGGAAGAAGGTATCCGGTCAGAGGATTGATCTCGATGTCATCCGCGAGGTCGATCTCAATAAACTTGAACCATGGGACGTCCAAGAAAAGTGCAACATAGGAACCACACCACAAAATGATTGGTATTTCTTCAGCCACAAGGACAAGAAGTATCCTACTGGAACACGCACAAATCGTGCAACAGCTGCCGGATTCTGGAAGGCCACTGGCCGTGATAAGGTCTCCGTTGTCGTCGGGGAGGCATCTCAAGAGGAGGGATGGGTGGTTTGCAGAATCTTCAAGAAGAAAAATCTTCACAAAACCATAGACAGCCCAATTTTGATTGCACCAACTTCATCTATCAGAACAGATAATATTACAAGTATCTTTGTTAGTTCATGTGATTATAATGATGAGGAAACTTTGAAGCATATACTTGACTGCATGGGATCAAGGACCTGCAAGGAAGAAACTAATGAAGCAAACAACTCATTAATCATGAACCACATTCATGGGTTTCATGACGATGATGATAGGTTCTTGAATCTTCCGAGCCTAGAGTGCCCAAACTCGTCTGCAGAGAATGATGACCCGGTGGGTCATCAAAGCGTGGACTCGGTTGGCCTCACCAACTGGGAAGCGCTTGATCGTTTCGTGGCTGCACAACTCGATGGCCGTGAAACGATGACCTACCCGGAATCAGGGAACTGCTTCAGTACTGATCACCATGATTATCATGATCATGAGCTCCAATTACCAACTACTCTGAGATCATCGAATTCATCCAGCAACGAGATCGAGCTGTGGCCTACTTTTGCTCCACATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0044085 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

302

Amino Acids

34.41

Weight (kDa)

5.09

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 108	1.4e-31	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46770
fragaria_vesca	FvH4_7g17540 FvH4_7g17550
malus_domestica	MD01G1088100.v1.1 MD01G1088300.v1.1 MD07G1158300.v1.1 MD08G1232800.v1.1
prunus_persica	Prupe.2G196600_v2.0.a1
pyrus_communis	pycom01g11190 pycom07g15480
rosa_chinensis	RchiOBHm_Chr1g0360971 RchiOBHm_Chr1g0361001
rosa_laevigata	RLG00000027761 RLG00000027763
rosa_multiflora	Rmu_co8429119.1_g000001 Rmu_sc0000677.1_g000011 Rmu_sc0000677.1_g000019
rosa_roxburghii	Rroxscaffold_4G00295590 Rroxscaffold_4G00295630
rosa_rugosa	Rorug01G0284100
rosa_samantha	Rh1AG295300 Rh1BG260200 Rh1BG260400 Rh1CG277500 Rh1CG277600 Rh1DG290200 Rh1DG290400
rosa_wichuraiana	Rw1G026130 Rw1G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
AatII	GACGTC	1 cut(s)	180
Acc36I	ACCTGC	1 cut(s)	545
AccII	CGCG	1 cut(s)	144
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	1 cut(s)	535
AcoI	YGGCCR	2 cut(s)	307, 751
AcsI	RAATTY	1 cut(s)	856
AcuI	CTGAAG	2 cut(s)	214, 775
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	2 cut(s)	92, 796
AfeI	AGCGCT	1 cut(s)	720
AfiI	CCNNNNNNNGG	4 cut(s)	120, 294, 316, 779
AgsI	TTSAA	4 cut(s)	167, 379, 505, 622
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	4 cut(s)	82, 284, 826, 880
AluI	AGCT	4 cut(s)	82, 284, 826, 880
Alw21I	GWGCWC	2 cut(s)	84, 828
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	535
Aor51HI	AGCGCT	1 cut(s)	720
AoxI	GGCC	5 cut(s)	300, 307, 700, 751, 884
ApeKI	GCWGC	2 cut(s)	284, 737
ApoI	RAATTY	1 cut(s)	856
AseI	ATTAAT	1 cut(s)	572
Asp700I	GAANNNNTTC	1 cut(s)	788
AspLEI	GCGC	1 cut(s)	721
AspS9I	GGNCC	1 cut(s)	534
AsuC2I	CCSGG	2 cut(s)	671, 773
AsuHPI	GGTGA	2 cut(s)	697, 794
AvaII	GGWCC	1 cut(s)	534
BaeGI	GKGCMC	1 cut(s)	644
BanII	GRGCYC	2 cut(s)	84, 828
Bbv12I	GWGCWC	2 cut(s)	84, 828
BbvI	GCAGC	2 cut(s)	271, 724
BccI	CCATC	2 cut(s)	351, 743
BceAI	ACGGC	2 cut(s)	294, 738
BcgI	CGANNNNNNTGC	2 cut(s)	856, 890
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	2 cut(s)	121, 261
BclI	TGATCA	2 cut(s)	799, 817
BcnI	CCSGG	2 cut(s)	671, 773
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	635
BfmI	CTRYAG	1 cut(s)	654
BfoI	RGCGCY	1 cut(s)	722
BfuAI	ACCTGC	1 cut(s)	545
BfuI	GTATCC	2 cut(s)	121, 261
BisI	GCNGC	2 cut(s)	285, 738
BlsI	GCNGC	2 cut(s)	286, 739
BmcAI	AGTACT	2 cut(s)	92, 796
Bme1390I	CCNGG	3 cut(s)	51, 671, 773
Bme18I	GGWCC	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	3 cut(s)	51, 671, 773
BmrI	ACTGGG	1 cut(s)	721
BmsI	GCATC	1 cut(s)	350
BmuI	ACTGGG	1 cut(s)	721
BpmI	CTGGAG	1 cut(s)	33
BpuEI	CTTGAG	3 cut(s)	24, 118, 330
BpuMI	CCSGG	2 cut(s)	671, 773
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	1 cut(s)	880
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 294, 316, 779
Bse1I	ACTGG	3 cut(s)	262, 310, 716
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	4 cut(s)	64, 138, 362, 860
BseLI	CCNNNNNNNGG	4 cut(s)	120, 294, 316, 779
BseMII	CTCAG	1 cut(s)	836
BseNI	ACTGG	3 cut(s)	262, 310, 716
BseRI	GAGGAG	2 cut(s)	92, 365
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	2 cut(s)	271, 724
BsgI	GTGCAG	1 cut(s)	723
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	5 cut(s)	302, 309, 702, 753, 886
BsiHKAI	GWGCWC	2 cut(s)	84, 828
BsiSI	CCGG	4 cut(s)	114, 288, 671, 773
BslFI	GGGAC	2 cut(s)	29, 188
BslI	CCNNNNNNNGG	4 cut(s)	120, 294, 316, 779
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	2 cut(s)	29, 188
BsnI	GGCC	5 cut(s)	302, 309, 702, 753, 886
Bso31I	GGTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	3 cut(s)	84, 644, 828
Bsp143I	GATC	8 cut(s)	127, 151, 527, 724, 799, 817, 848, 873
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	5 cut(s)	302, 309, 702, 753, 886
BspCNI	CTCAG	1 cut(s)	837
BspFNI	CGCG	1 cut(s)	144
BspHI	TCATGA	4 cut(s)	576, 598, 814, 820
BspLI	GGNNCC	1 cut(s)	202
BspMAI	CTGCAG	1 cut(s)	658
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	535
BspTNI	GGTCTC	1 cut(s)	325
BsrI	ACTGG	3 cut(s)	262, 310, 716
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	8 cut(s)	127, 151, 527, 724, 799, 817, 848, 873
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	845
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	4 cut(s)	64, 138, 362, 860
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	1 cut(s)	721
BstKTI	GATC	8 cut(s)	130, 154, 530, 727, 802, 820, 851, 876
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	8 cut(s)	127, 151, 527, 724, 799, 817, 848, 873
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 639
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	49, 669, 771
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	1 cut(s)	644
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	271, 724
BstXI	CCANNNNNNTGG	1 cut(s)	590
BsuI	GTATCC	2 cut(s)	121, 261
BsuRI	GGCC	5 cut(s)	302, 309, 702, 753, 886
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	4 cut(s)	64, 138, 362, 860
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	545
CciI	TCATGA	4 cut(s)	576, 598, 814, 820
CfoI	GCGC	1 cut(s)	721
Cfr13I	GGNCC	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	91, 795
CviQI	GTAC	2 cut(s)	91, 795
DdeI	CTNAG	1 cut(s)	845
DpnI	GATC	8 cut(s)	129, 153, 529, 726, 801, 819, 850, 875
DpnII	GATC	8 cut(s)	127, 151, 527, 724, 799, 817, 848, 873
EaeI	YGGCCR	2 cut(s)	307, 751
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	2 cut(s)	82, 826
Eco130I	CCWWGG	1 cut(s)	170
Eco24I	GRGCYC	2 cut(s)	84, 828
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	534
Eco47III	AGCGCT	1 cut(s)	720
Eco53kI	GAGCTC	2 cut(s)	82, 826
Eco57I	CTGAAG	2 cut(s)	214, 775
EcoICRI	GAGCTC	2 cut(s)	82, 826
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	856
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	2 cut(s)	84, 828
ErhI	CCWWGG	1 cut(s)	170
FaqI	GGGAC	2 cut(s)	29, 188
FbaI	TGATCA	2 cut(s)	799, 817
Fnu4HI	GCNGC	2 cut(s)	285, 738
FokI	GGATG	4 cut(s)	51, 125, 369, 847
FriOI	GRGCYC	2 cut(s)	84, 828
Fsp4HI	GCNGC	2 cut(s)	285, 738
FspBI	CTAG	1 cut(s)	635
GlaI	GCGC	1 cut(s)	720
GluI	GCNGC	2 cut(s)	285, 738
GsuI	CTGGAG	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	722
HaeIII	GGCC	5 cut(s)	302, 309, 702, 753, 886
HapII	CCGG	4 cut(s)	114, 288, 671, 773
HhaI	GCGC	1 cut(s)	721
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	719
HinP1I	GCGC	1 cut(s)	719
HinfI	GANTC	5 cut(s)	291, 372, 622, 692, 776
HpaII	CCGG	4 cut(s)	114, 288, 671, 773
HphI	GGTGA	2 cut(s)	697, 794
Hpy166II	GTNNAC	2 cut(s)	28, 691
Hpy188I	TCNGA	5 cut(s)	59, 120, 443, 630, 846
Hpy188III	TCNNGA	9 cut(s)	131, 295, 347, 379, 577, 599, 619, 815, 821
Hpy8I	GTNNAC	2 cut(s)	28, 691
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	2 cut(s)	100, 292
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	9 cut(s)	88, 192, 278, 369, 425, 522, 540, 656, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 639
HpyF3I	CTNAG	1 cut(s)	845
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	1 cut(s)	719
Ksp22I	TGATCA	2 cut(s)	799, 817
Kzo9I	GATC	8 cut(s)	127, 151, 527, 724, 799, 817, 848, 873
LmnI	GCTCC	3 cut(s)	79, 831, 901
Lsp1109I	GCAGC	2 cut(s)	271, 724
LweI	GCATC	1 cut(s)	350
MaeI	CTAG	1 cut(s)	635
MaeII	ACGT	1 cut(s)	177
MalI	GATC	8 cut(s)	129, 153, 529, 726, 801, 819, 850, 875
MboI	GATC	8 cut(s)	127, 151, 527, 724, 799, 817, 848, 873
MboII	GAAGA	8 cut(s)	86, 115, 220, 367, 383, 394, 557, 617
MhlI	GDGCHC	3 cut(s)	84, 644, 828
MluCI	AATT	3 cut(s)	414, 830, 856
MlyI	GAGTC	1 cut(s)	686
MmeI	TCCRAC	1 cut(s)	92
MroXI	GAANNNNTTC	1 cut(s)	788
MseI	TTAA	1 cut(s)	572
MslI	CAYNNNNRTG	4 cut(s)	588, 603, 819, 904
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	4 cut(s)	114, 288, 671, 773
MspR9I	CCNGG	3 cut(s)	51, 671, 773
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	284, 639
NciI	CCSGG	2 cut(s)	671, 773
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	8 cut(s)	127, 151, 527, 724, 799, 817, 848, 873
NlaIV	GGNNCC	1 cut(s)	202
PagI	TCATGA	4 cut(s)	576, 598, 814, 820
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	788
PfeI	GAWTC	4 cut(s)	291, 372, 622, 776
PkrI	GCNGC	2 cut(s)	286, 739
PleI	GAGTC	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	686
PpuMI	RGGWCCY	1 cut(s)	534
PshBI	ATTAAT	1 cut(s)	572
PsiI	TTATAA	1 cut(s)	486
Psp124BI	GAGCTC	2 cut(s)	84, 828
Psp5II	RGGWCCY	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	534
PspPPI	RGGWCCY	1 cut(s)	534
PstI	CTGCAG	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	2 cut(s)	92, 796
RsaNI	GTAC	2 cut(s)	91, 795
RseI	CAYNNNNRTG	4 cut(s)	588, 603, 819, 904
SacI	GAGCTC	2 cut(s)	84, 828
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	2 cut(s)	285, 738
Sau3AI	GATC	8 cut(s)	127, 151, 527, 724, 799, 817, 848, 873
Sau96I	GGNCC	1 cut(s)	534
ScaI	AGTACT	2 cut(s)	92, 796
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	3 cut(s)	51, 671, 773
SduI	GDGCHC	3 cut(s)	84, 644, 828
SfaNI	GCATC	1 cut(s)	350
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	534
SmiMI	CAYNNNNRTG	4 cut(s)	588, 603, 819, 904
SmlI	CTYRAG	3 cut(s)	39, 97, 345
SmoI	CTYRAG	3 cut(s)	39, 97, 345
Sse9I	AATT	3 cut(s)	414, 830, 856
SsiI	CCGC	1 cut(s)	142
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	1 cut(s)	635
SstI	GAGCTC	2 cut(s)	84, 828
StyD4I	CCNGG	3 cut(s)	49, 669, 771
StyI	CCWWGG	1 cut(s)	170
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	5 cut(s)	132, 150, 747, 854, 876
TasI	AATT	3 cut(s)	414, 830, 856
TatI	WGTACW	2 cut(s)	90, 794
TfiI	GAWTC	4 cut(s)	291, 372, 622, 776
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	2 cut(s)	284, 737
TspDTI	ATGAA	8 cut(s)	53, 423, 465, 570, 578, 587, 593, 849
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	534
VspI	ATTAAT	1 cut(s)	572
XapI	RAATTY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	788
XspI	CTAG	1 cut(s)	635
ZraI	GACGTC	1 cut(s)	178
ZrmI	AGTACT	2 cut(s)	92, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.