Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003111

Physical Location & Seq

Genomic Coordinates Forward (+)

19427316 .. 19428933

Gene Structure 1618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCGAAGATCAAACCTCAAGCATTGTTGCAGCAAAGCAAGAAGAAGAAAGGACCGTCTCGGATAAGCATAACCAACATCGTCATTTACACTTTGGCTGTGCTTTTGCTTGTCTTTGTTCTCTTCTCTGCTTACAGACGTTGGACTCACAGATCTGAGATCCCAACGCACAATGGTAGATCAGTTCTTGAGGATGCAGCCTTCCCTGGAATGAAGAATGTTGATCTTCCGCGGTTTGCTACCTTAGATACGGGCAAAGGTTCAGTGACCATTGAACTCTTCAAGGATACTGCTCCCAATGTGGTTGACCAGTTCATGAAATTCTGTCAAGATGGGTATTTCAAAGGTTTCTTATTCAGTCGAGTTGTAAAGCATTTTGTGATTCAAGCCGGTGACTCTGCGGAGTTCGATGCTGTCAAAGATTGGGCACTCGACAGAAAGAACATTGATACCAGTTTGAAACATGAAGAATTCATGGTGGGAACTCCTAAAGCTAAAAACGAGCAAGGAGGATTCGAGTTCTTCATTGTGTCTGCTCAGATCAAAGATCTGAACGAGAAATTGACTGTCTTTGGTCGAGTTTCTAAAGGACAAGACGTTGTTCAGGAGATCGAAGAGGTTGAGACAGATGATCAGTATCAACCAAAGTCGCCAATAGAGATCATGTCCGTCACTTTGCTTCAAGACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

230

Amino Acids

26.04

Weight (kDa)

6.92

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	81 - 225	4.6e-35	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47320 AT3G66654 AT3G66654 AT3G66654 AT3G66654 AT3G66654
fragaria_vesca	FvH4_4g19620 FvH4_4g19630
malus_domestica	MD13G1155100.v1.1 MD13G1155200.v1.1 MD16G1154600.v1.1 MD16G1154700.v1.1
prunus_persica	Prupe.1G118100_v2.0.a1 Prupe.1G118100_v2.0.a1 Prupe.1G118200_v2.0.a1
pyrus_communis	pycom13g13190 pycom13g13200 pycom16g13100 pycom16g13110
rosa_chinensis	RchiOBHm_Chr4g0424881 RchiOBHm_Chr4g0424891
rosa_laevigata	RLG00000007412
rosa_multiflora	Rmu_co8066912.1_g000001 Rmu_sc0006754.1_g000003 Rmu_sc0033998.1_g000001
rosa_rugosa	Rorug04G0200300 Rorug04G0200400
rosa_samantha	Rh4AG257700 Rh4AG257800 Rh4BG263100 Rh4BG263200 Rh4CG274100 Rh4CG274200 Rh4DG258800 Rh4DG258900
rosa_wichuraiana	Rw4G022240 Rw4G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	232
AciI	CCGC	3 cut(s)	230, 232, 401
AclWI	GGATC	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	320, 470
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	6 cut(s)	275, 283, 343, 386, 460, 683
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	1 cut(s)	494
AluI	AGCT	1 cut(s)	494
Alw26I	GTCTC	2 cut(s)	63, 617
AlwI	GGATC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	31, 197
ApoI	RAATTY	2 cut(s)	320, 470
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	43, 209
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	280
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	2 cut(s)	63, 617
BfuI	GTATCC	1 cut(s)	280
BglII	AGATCT	2 cut(s)	152, 547
BisI	GCNGC	2 cut(s)	32, 198
BlsI	GCNGC	2 cut(s)	33, 199
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	184, 400
BpuEI	CTTGAG	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	205, 230
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	310, 453
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	205, 230
BseGI	GGATG	1 cut(s)	199
BseJI	GATNNNNATC	1 cut(s)	636
BseMII	CTCAG	2 cut(s)	147, 551
BseNI	ACTGG	2 cut(s)	310, 453
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	43, 209
Bsh1236I	CGCG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	390
BsmAI	GTCTC	2 cut(s)	63, 617
BsmBI	CGTCTC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	430
BspACI	CCGC	3 cut(s)	230, 232, 401
BspCNI	CTCAG	2 cut(s)	148, 550
BspFNI	CGCG	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	315
BspPI	GGATC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	310, 453
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	2 cut(s)	205, 230
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	57, 568
Bst6I	CTCTTC	3 cut(s)	128, 284, 609
BstDEI	CTNAG	3 cut(s)	156, 244, 537
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	232
BstMAI	GTCTC	2 cut(s)	63, 617
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	430
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	43, 209
BstX2I	RGATCY	3 cut(s)	152, 159, 547
BstYI	RGATCY	3 cut(s)	152, 159, 547
BsuI	GTATCC	1 cut(s)	280
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	270
CciI	TCATGA	1 cut(s)	315
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	53
Cfr42I	CCGCGG	1 cut(s)	233
CviAII	CATG	5 cut(s)	316, 464, 475, 664, 688
CviJI	RGCY	4 cut(s)	98, 200, 389, 494
CviKI_1	RGCY	4 cut(s)	98, 200, 389, 494
DdeI	CTNAG	3 cut(s)	156, 244, 537
Eam1104I	CTCTTC	3 cut(s)	128, 284, 609
EarI	CTCTTC	3 cut(s)	128, 284, 609
Eco47I	GGWCC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	5 cut(s)	319, 467, 478, 667, 691
FaiI	YATR	6 cut(s)	71, 317, 465, 476, 665, 689
FatI	CATG	5 cut(s)	315, 463, 474, 663, 687
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	2 cut(s)	32, 198
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	32, 198
GluI	GCNGC	2 cut(s)	32, 198
HapII	CCGG	1 cut(s)	390
Hin1II	CATG	5 cut(s)	319, 467, 478, 667, 691
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	4 cut(s)	145, 382, 395, 513
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	4 cut(s)	63, 157, 540, 552
Hpy188III	TCNNGA	5 cut(s)	188, 316, 329, 605, 683
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	57, 568
HpyCH4IV	ACGT	2 cut(s)	139, 597
HpyCH4V	TGCA	2 cut(s)	31, 197
HpyF3I	CTNAG	3 cut(s)	156, 244, 537
HpySE526I	ACGT	2 cut(s)	139, 597
Hsp92II	CATG	5 cut(s)	319, 467, 478, 667, 691
Ksp22I	TGATCA	1 cut(s)	631
KspI	CCGCGG	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	192, 219, 323, 403, 466, 590
Lsp1109I	GCAGC	2 cut(s)	43, 209
LweI	GCATC	2 cut(s)	184, 400
MaeII	ACGT	2 cut(s)	139, 597
MaeIII	GTNAC	3 cut(s)	265, 392, 670
MflI	RGATCY	3 cut(s)	152, 159, 547
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	3 cut(s)	320, 470, 560
MlyI	GAGTC	2 cut(s)	139, 389
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	4 cut(s)	27, 184, 503, 610
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	232
NlaIII	CATG	5 cut(s)	319, 467, 478, 667, 691
NmuCI	GTSAC	3 cut(s)	265, 392, 670
NspI	RCATGY	1 cut(s)	691
PagI	TCATGA	1 cut(s)	315
PciI	ACATGT	1 cut(s)	687
PfeI	GAWTC	2 cut(s)	382, 513
PkrI	GCNGC	2 cut(s)	33, 199
PleI	GAGTC	2 cut(s)	139, 389
PpsI	GAGTC	2 cut(s)	139, 389
PscI	ACATGT	1 cut(s)	687
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	3 cut(s)	152, 159, 547
SacII	CCGCGG	1 cut(s)	233
SatI	GCNGC	2 cut(s)	32, 198
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	2 cut(s)	139, 389
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	430
SetI	ASST	8 cut(s)	19, 142, 245, 262, 349, 496, 600, 621
SfaNI	GCATC	2 cut(s)	184, 400
Sfr303I	CCGCGG	1 cut(s)	233
SgrBI	CCGCGG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	18, 188
SmoI	CTYRAG	2 cut(s)	18, 188
Sse9I	AATT	3 cut(s)	320, 470, 560
SsiI	CCGC	3 cut(s)	230, 232, 401
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	57, 568
TaiI	ACGT	2 cut(s)	142, 600
TaqI	TCGA	6 cut(s)	361, 408, 432, 516, 577, 612
TasI	AATT	3 cut(s)	320, 470, 560
TfiI	GAWTC	2 cut(s)	382, 513
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	3 cut(s)	265, 392, 670
TseI	GCWGC	2 cut(s)	31, 197
Tsp45I	GTSAC	3 cut(s)	265, 392, 670
TspDTI	ATGAA	6 cut(s)	227, 304, 332, 463, 480, 514
TspGWI	ACGGA	1 cut(s)	658
TspRI	CASTG	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	2 cut(s)	320, 470
XceI	RCATGY	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.