Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003111

Physical Location & Seq

Genomic Coordinates Reverse (-)

12262602 .. 12265334

Gene Structure 2733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1154600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGCGGATAAAGCCCCAGGCGCTGTTAATTCAGAGCAAGAAGAAGAAGGGGCCGACTCGGATCAGTACCACTACCATAGTTATGTGCAATTTAATCATCGCTCTGGTCGCCTTGTCGTTGATCGCTACTTATCGCTATTGGTCCAGAAGGTCGCTGGACCAATCTGGGTCGGAGTTATCTAATCAAGAGAAAATTGATGTGTTTGGAAAGAAGGACGATCTTCCGGGTTATGCTATTCTAAATACATCAAAGGGTCCTATCACAGTGGAACTTTTCAAGGAGGCTTCTCCAGAGGTTGTGGATAGATTTATTGACTTATGTCAAAAGGGACGCTTCAAGGGGATGCCCTTCAGTCATGTGATCAAGCACTATATAATCAAAGGGGGTGGTTCCCAAGAACTCGGAGCAGCTGAAGATTGGATATCAAAGGGGAAACTTCGTGGTCAACTTGTTACGAGTCCAAAGCACGAAGCTTTTATGCTTGGAACTACGAAGGCTAGACCAGACAACAAAGGATTTGAGCTTGTTATCACAACTGCACCAATACCAGATTTAAATGATAAGCTAATTGTCTTTGGACGGGTCATCAAAGGAGAGGAAGTGGTACAGGAAATTGAAGAGGTCGATACAGATGAACATTATCGGCCTAAATCATCTGTAGGGATCACCAGCGTGATTCTGAAACAGGAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

233

Amino Acids

25.8

Weight (kDa)

9.19

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	81 - 226	1.2e-29	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47320 AT3G66654 AT3G66654 AT3G66654 AT3G66654 AT3G66654
fragaria_vesca	FvH4_4g19620 FvH4_4g19630
malus_domestica	MD13G1155100.v1.1 MD13G1155200.v1.1 MD16G1154600.v1.1 MD16G1154700.v1.1
prunus_persica	Prupe.1G118100_v2.0.a1 Prupe.1G118100_v2.0.a1 Prupe.1G118200_v2.0.a1
pyrus_communis	pycom13g13190 pycom13g13200 pycom16g13100 pycom16g13110
rosa_chinensis	RchiOBHm_Chr4g0424881 RchiOBHm_Chr4g0424891
rosa_laevigata	RLG00000007412
rosa_multiflora	Rmu_co8066912.1_g000001 Rmu_sc0006754.1_g000003 Rmu_sc0033998.1_g000001
rosa_rugosa	Rorug04G0200300 Rorug04G0200400
rosa_samantha	Rh4AG257700 Rh4AG257800 Rh4BG263100 Rh4BG263200 Rh4CG274100 Rh4CG274200 Rh4DG258800 Rh4DG258900
rosa_wichuraiana	Rw4G022240 Rw4G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	2 cut(s)	71, 674
AcuI	CTGAAG	2 cut(s)	337, 435
AfaI	GTAC	2 cut(s)	70, 609
AgsI	TTSAA	3 cut(s)	280, 340, 620
AjnI	CCWGG	1 cut(s)	18
AleI	CACNNNNGTG	1 cut(s)	674
AluBI	AGCT	4 cut(s)	413, 476, 526, 568
AluI	AGCT	4 cut(s)	413, 476, 526, 568
AlwI	GGATC	2 cut(s)	71, 674
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	53, 647
ApeKI	GCWGC	1 cut(s)	410
AspLEI	GCGC	2 cut(s)	7, 25
AspS9I	GGNCC	4 cut(s)	53, 144, 160, 257
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	661
AvaII	GGWCC	3 cut(s)	144, 160, 257
BbvI	GCAGC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	228
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	26
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
Bme1390I	CCNGG	2 cut(s)	20, 228
Bme18I	GGWCC	3 cut(s)	144, 160, 257
BmgT120I	GGNCC	4 cut(s)	53, 144, 160, 257
BmiI	GGNNCC	3 cut(s)	54, 258, 394
BmrFI	CCNGG	2 cut(s)	20, 228
BmsI	GCATC	1 cut(s)	336
BoxI	GACNNNNGTC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	55, 649
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	55, 649
Bsp143I	GATC	6 cut(s)	63, 123, 220, 363, 666, 693
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	2 cut(s)	55, 649
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	54, 258, 394
BspPI	GGATC	2 cut(s)	71, 674
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	6 cut(s)	63, 123, 220, 363, 666, 693
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	351
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	7, 25
BstKTI	GATC	6 cut(s)	66, 126, 223, 366, 669, 696
BstMBI	GATC	6 cut(s)	63, 123, 220, 363, 666, 693
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 22, 110
BstNI	CCWGG	1 cut(s)	20
BstPAI	GACNNNNGTC	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	18, 226
BstSFI	CTRYAG	1 cut(s)	660
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	693
BstYI	RGATCY	1 cut(s)	693
BsuRI	GGCC	2 cut(s)	55, 649
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	273
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	2 cut(s)	7, 25
Cfr13I	GGNCC	4 cut(s)	53, 144, 160, 257
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	2 cut(s)	69, 608
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	9 cut(s)	16, 55, 287, 413, 476, 500, 526, 568, 649
CviKI_1	RGCY	9 cut(s)	16, 55, 287, 413, 476, 500, 526, 568, 649
CviQI	GTAC	2 cut(s)	69, 608
DpnI	GATC	6 cut(s)	65, 125, 222, 365, 668, 695
DpnII	GATC	6 cut(s)	63, 123, 220, 363, 666, 693
DraI	TTTAAA	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Eco32I	GATATC	1 cut(s)	426
Eco47I	GGWCC	3 cut(s)	144, 160, 257
Eco57I	CTGAAG	2 cut(s)	337, 435
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	18
EcoRV	GATATC	1 cut(s)	426
FaeI	CATG	1 cut(s)	362
FaiI	YATR	8 cut(s)	80, 86, 234, 322, 360, 375, 377, 482
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	2 cut(s)	6, 24
GluI	GCNGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	55, 649
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	342
HhaI	GCGC	2 cut(s)	7, 25
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	2 cut(s)	5, 23
HinP1I	GCGC	2 cut(s)	5, 23
HincII	GTYRAC	1 cut(s)	449
HindII	GTYRAC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	3 cut(s)	58, 460, 679
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	5 cut(s)	36, 63, 175, 407, 684
Hpy188III	TCNNGA	3 cut(s)	147, 188, 293
Hpy8I	GTNNAC	1 cut(s)	449
HpyAV	CCTTC	5 cut(s)	43, 144, 208, 361, 490
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	90, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 22, 110
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	2 cut(s)	5, 23
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	6 cut(s)	63, 123, 220, 363, 666, 693
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	1 cut(s)	422
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	6 cut(s)	65, 125, 222, 365, 668, 695
MboI	GATC	6 cut(s)	63, 123, 220, 363, 666, 693
MboII	GAAGA	5 cut(s)	55, 58, 215, 428, 632
MflI	RGATCY	1 cut(s)	693
MluCI	AATT	5 cut(s)	30, 91, 195, 570, 615
MlyI	GAGTC	2 cut(s)	52, 469
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	4 cut(s)	277, 289, 592, 616
MseI	TTAA	3 cut(s)	29, 95, 557
MslI	CAYNNNNRTG	2 cut(s)	83, 674
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	20, 228
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	13, 22, 110
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	6 cut(s)	63, 123, 220, 363, 666, 693
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	3 cut(s)	54, 258, 394
OliI	CACNNNNGTG	1 cut(s)	674
PfeI	GAWTC	1 cut(s)	679
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	2 cut(s)	52, 468
PpsI	GAGTC	2 cut(s)	52, 468
PpuMI	RGGWCCY	1 cut(s)	257
PshAI	GACNNNNGTC	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	54, 258, 394
PspPI	GGNCC	4 cut(s)	53, 144, 160, 257
PspPPI	RGGWCCY	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	693
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	70, 609
RsaNI	GTAC	2 cut(s)	69, 608
RseI	CAYNNNNRTG	2 cut(s)	83, 674
SaqAI	TTAA	3 cut(s)	29, 95, 557
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	6 cut(s)	63, 123, 220, 363, 666, 693
Sau96I	GGNCC	4 cut(s)	53, 144, 160, 257
SchI	GAGTC	2 cut(s)	52, 469
ScrFI	CCNGG	2 cut(s)	20, 228
SetI	ASST	7 cut(s)	155, 300, 415, 478, 528, 570, 627
SfaNI	GCATC	1 cut(s)	336
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	3 cut(s)	144, 160, 257
SmiI	ATTTAAAT	1 cut(s)	558
SmiMI	CAYNNNNRTG	2 cut(s)	83, 674
Sse9I	AATT	5 cut(s)	30, 91, 195, 570, 615
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	18, 226
SwaI	ATTTAAAT	1 cut(s)	558
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	627
TasI	AATT	5 cut(s)	30, 91, 195, 570, 615
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	3 cut(s)	29, 95, 557
Tru9I	TTAA	3 cut(s)	29, 95, 557
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	1 cut(s)	410
TspDTI	ATGAA	1 cut(s)	651
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	3 cut(s)	144, 160, 257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.