FvH4_4g19620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003111
Physical Location & Seq
Forward (+)
23212936 .. 23215264
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19620.t1

Sequence Viewer

Length: 1212 bp
ATGGAATTGGGCGGTGGTTTCAAGGCCAAGCACCACGGACATTTCAGGGCCGGCGGATTGGGTTCCGGCGAGATTTTGGTGATCAAGCTGCCTGATAAGAAGGTAATGCGTGTTGTTTCTCGGTCAGTTTTTCTTGCTTTGGTTATGCTCACACTGCCCTGTATTAAGTCTATTATAAAGGGTGTGAGTGTTTCTGAATTGGAAACCAGTCATGGGTATGAAACTTTCAAATTTGAGCAATTGGGTTTGCTTTTCAATGACTTGGCTGGCGAAGGCCTCCGCGGAGAGAGTGACAGGTCTCTCATTGTGAGTCCTGGCAGTGTTGGTATCATTCATGCTCTTGATATTTTGAATGTTGTTGATAATGGATTTGAAGTTGTTATGGATTCGGAGAGGAAGAGCTCGTTCGAGAACCAGTCGGTGGATTTTGTGTTCGCGTTTGATTTAGTTGACGCTAAATTTGTGGATCGCGTCTTGAAAGTTGGTGGCATTGTTGCTGTTCCTCTAAGCAATGACCCTTCAAATGCTTTTAGCAAAAAATCCAATTACAAGATTGTGTATCTTCGCCGATACAGTTCAACTTTTGTGGCAATGAGGAAGACCGGTGCGGCTGGTGAGCAGCAGCTGGAGAGTCCAGACCGCCGGCGGCTTTGCCAATTCGGAAGTGAGGCCAAGGAGGCCGTCCTACAGGGTCTTGAAGATGTTTTGCTTGAGCCGCCAAGACGTGCATTGGCAAAATCAAGCCAGTACTTGAAGAAGATGAAGTTCCTTCCTGACCTGTTGGGGAATTCTCTTGAAAATTACGAGCGCCGTCTGTTTGTTAATGTGGACTTGAATGAGCAAAATAGTGGCACAGTTGAATGGTTTCATCAAAACTATCCGAAAATGAATACGGAATTTGAAGTACACAACCTTGAAGTAGAAGCTGAAGCAGAAGAAGCCTCAAGCAAGCCGCAGAAGGATGTTTCGGGTTGGCTAAAGGAGAATGTGAAGGAAGAGGACTATGTTGTGATGAAAGCAGAAGCAGAAGTAGTTGTGGATATGATGCAGAAGAGTACAATCTGTCTGGTGGATGAGTTGTTTTTGGAGTGTAACAATGAATGGTGGCAGAATGGAAATAGTGATAAGAGCAAGAGAGCTTATTGGGAGTGTGTTGCTCTACATGGAAGGCTAAGGGATATAGGAGTTGCTGTACACCAGTGGTTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

404

Amino Acids

45.35

Weight (kDa)

5.63

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7870 PF25276 229 - 402 4.9e-79 Domain of unknown function (DUF7870)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AccB7I CCANNNNNTGG 1 cut(s) 421
AccII CGCG 3 cut(s) 282, 437, 471
AciI CCGC 9 cut(s) 12, 54, 280, 282, 608, 640, 646, 716, 953
AclWI GGATC 1 cut(s) 474
AcsI RAATTY 4 cut(s) 230, 458, 787, 896
AcuI CTGAAG 1 cut(s) 948
AfaI GTAC 4 cut(s) 749, 906, 1057, 1194
AfiI CCNNNNNNNGG 2 cut(s) 213, 421
AgeI ACCGGT 1 cut(s) 602
AjiI CACGTC 1 cut(s) 725
AjnI CCWGG 1 cut(s) 313
AloI GAACNNNNNNTCC 2 cut(s) 416, 448
AluBI AGCT 5 cut(s) 88, 402, 625, 926, 1139
AluI AGCT 5 cut(s) 88, 402, 625, 926, 1139
Alw21I GWGCWC 1 cut(s) 404
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 1 cut(s) 474
AlwNI CAGNNNCTG 1 cut(s) 625
AoxI GGCC 5 cut(s) 24, 48, 274, 669, 678
ApeKI GCWGC 3 cut(s) 88, 619, 622
ApoI RAATTY 4 cut(s) 230, 458, 787, 896
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AsiGI ACCGGT 1 cut(s) 602
Asp700I GAANNNNTTC 1 cut(s) 864
AspLEI GCGC 1 cut(s) 810
AspS9I GGNCC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 91, 626
BanII GRGCYC 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 605
Bbv12I GWGCWC 1 cut(s) 404
BbvI GCAGC 3 cut(s) 75, 631, 634
BceAI ACGGC 2 cut(s) 665, 795
BciT130I CCWGG 1 cut(s) 315
BclI TGATCA 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 686
BfoI RGCGCY 1 cut(s) 811
BglI GCCNNNNNGGC 1 cut(s) 677
BisI GCNGC 7 cut(s) 89, 609, 620, 623, 647, 716, 953
BlsI GCNGC 7 cut(s) 90, 610, 621, 624, 648, 717, 954
BmcAI AGTACT 1 cut(s) 749
Bme1390I CCNGG 1 cut(s) 315
BmgBI CACGTC 1 cut(s) 725
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 1035
BpiI GAAGAC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 647
Bpu10I CCTNAGC 1 cut(s) 1172
BpuEI CTTGAG 2 cut(s) 731, 928
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 34, 280, 672
BsaWI WCCGGW 1 cut(s) 602
BsaXI ACNNNNNCTCC 2 cut(s) 1176, 1206
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 421
Bse118I RCCGGY 3 cut(s) 50, 602, 642
Bse1I ACTGG 4 cut(s) 207, 415, 745, 1198
Bse3DI GCAATG 2 cut(s) 517, 597
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 3 cut(s) 34, 280, 672
BseGI GGATG 2 cut(s) 967, 1078
BseLI CCNNNNNNNGG 2 cut(s) 213, 421
BseMI GCAATG 2 cut(s) 517, 597
BseNI ACTGG 4 cut(s) 207, 415, 745, 1198
BseXI GCAGC 3 cut(s) 75, 631, 634
Bsh1236I CGCG 3 cut(s) 282, 437, 471
BshFI GGCC 5 cut(s) 26, 50, 276, 671, 680
BshTI ACCGGT 1 cut(s) 602
BsiHKAI GWGCWC 1 cut(s) 404
BsiSI CCGG 4 cut(s) 51, 66, 603, 643
BslI CCNNNNNNNGG 2 cut(s) 213, 421
BsmAI GTCTC 1 cut(s) 303
BsnI GGCC 5 cut(s) 26, 50, 276, 671, 680
Bso31I GGTCTC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 404
Bsp1407I TGTACA 1 cut(s) 1192
Bsp143I GATC 2 cut(s) 81, 466
BspACI CCGC 9 cut(s) 12, 54, 280, 282, 608, 640, 646, 716, 953
BspANI GGCC 5 cut(s) 26, 50, 276, 671, 680
BspFNI CGCG 3 cut(s) 282, 437, 471
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 474
BspQI GCTCTTC 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 303
BsrDI GCAATG 2 cut(s) 517, 597
BsrFI RCCGGY 3 cut(s) 50, 602, 642
BsrGI TGTACA 1 cut(s) 1192
BsrI ACTGG 4 cut(s) 207, 415, 745, 1198
BssAI RCCGGY 3 cut(s) 50, 602, 642
BssECI CCNNGG 3 cut(s) 34, 280, 672
BssMI GATC 2 cut(s) 81, 466
BssT1I CCWWGG 1 cut(s) 672
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 575, 856
Bst6I CTCTTC 3 cut(s) 392, 990, 1046
BstAUI TGTACA 1 cut(s) 1192
BstC8I GCNNGC 4 cut(s) 52, 268, 644, 950
BstDEI CTNAG 2 cut(s) 506, 1172
BstDSI CCRYGG 2 cut(s) 34, 280
BstF5I GGATG 2 cut(s) 967, 1078
BstFNI CGCG 3 cut(s) 282, 437, 471
BstH2I RGCGCY 1 cut(s) 811
BstHHI GCGC 1 cut(s) 810
BstKTI GATC 2 cut(s) 84, 469
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 2 cut(s) 81, 466
BstMWI GCNNNNNNNGC 4 cut(s) 154, 677, 715, 938
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 686
BstUI CGCG 3 cut(s) 282, 437, 471
BstV1I GCAGC 3 cut(s) 75, 631, 634
BstV2I GAAGAC 1 cut(s) 605
BsuRI GGCC 5 cut(s) 26, 50, 276, 671, 680
BtgI CCRYGG 2 cut(s) 34, 280
BtrI CACGTC 1 cut(s) 725
BtsCI GGATG 2 cut(s) 967, 1078
BtsI GCAGTG 2 cut(s) 152, 325
BtsIMutI CAGTG 3 cut(s) 152, 325, 1205
Cac8I GCNNGC 4 cut(s) 52, 268, 644, 950
CaiI CAGNNNCTG 1 cut(s) 625
CfoI GCGC 1 cut(s) 810
Cfr10I RCCGGY 3 cut(s) 50, 602, 642
Cfr13I GGNCC 1 cut(s) 48
Cfr42I CCGCGG 1 cut(s) 283
CseI GACGC 2 cut(s) 460, 461
Csp6I GTAC 4 cut(s) 748, 905, 1056, 1193
CspAI ACCGGT 1 cut(s) 602
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 3 cut(s) 212, 335, 1163
CviQI GTAC 4 cut(s) 748, 905, 1056, 1193
DdeI CTNAG 2 cut(s) 506, 1172
DpnI GATC 2 cut(s) 83, 468
DpnII GATC 2 cut(s) 81, 466
Eam1104I CTCTTC 3 cut(s) 392, 990, 1046
EarI CTCTTC 3 cut(s) 392, 990, 1046
EciI GGCGGA 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 672
Eco147I AGGCCT 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 404
Eco31I GGTCTC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 402
Eco57I CTGAAG 1 cut(s) 948
EcoICRI GAGCTC 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 787
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 672
EcoT38I GRGCYC 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 3 cut(s) 215, 338, 1166
FatI CATG 3 cut(s) 211, 334, 1162
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 7 cut(s) 89, 609, 620, 623, 647, 716, 953
FokI GGATG 2 cut(s) 974, 1085
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 7 cut(s) 89, 609, 620, 623, 647, 716, 953
GlaI GCGC 1 cut(s) 809
GluI GCNGC 7 cut(s) 89, 609, 620, 623, 647, 716, 953
GsuI CTGGAG 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 811
HaeIII GGCC 5 cut(s) 26, 50, 276, 671, 680
HapII CCGG 4 cut(s) 51, 66, 603, 643
HgaI GACGC 2 cut(s) 460, 461
HhaI GCGC 1 cut(s) 810
Hin1II CATG 3 cut(s) 215, 338, 1166
Hin6I GCGC 1 cut(s) 808
HinP1I GCGC 1 cut(s) 808
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 3 cut(s) 310, 386, 631
HpaII CCGG 4 cut(s) 51, 66, 603, 643
HphI GGTGA 2 cut(s) 91, 626
Hpy166II GTNNAC 4 cut(s) 451, 829, 907, 1195
Hpy188I TCNGA 4 cut(s) 196, 391, 662, 882
Hpy188III TCNNGA 7 cut(s) 341, 409, 475, 635, 695, 773, 794
Hpy8I GTNNAC 4 cut(s) 451, 829, 907, 1195
HpyAV CCTTC 7 cut(s) 94, 266, 528, 779, 952, 985, 1161
HpyCH4III ACNGT 2 cut(s) 575, 856
HpyCH4IV ACGT 1 cut(s) 724
HpyCH4V TGCA 2 cut(s) 728, 1048
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 677, 715, 938
HpyF3I CTNAG 2 cut(s) 506, 1172
HpySE526I ACGT 1 cut(s) 724
Hsp92II CATG 3 cut(s) 215, 338, 1166
HspAI GCGC 1 cut(s) 808
KroI GCCGGC 2 cut(s) 50, 642
KroNI GCCGGC 2 cut(s) 52, 644
Ksp22I TGATCA 1 cut(s) 81
KspI CCGCGG 1 cut(s) 283
Kzo9I GATC 2 cut(s) 81, 466
LguI GCTCTTC 1 cut(s) 392
Lsp1109I GCAGC 3 cut(s) 75, 631, 634
LweI GCATC 1 cut(s) 1035
MaeII ACGT 1 cut(s) 724
MaeIII GTNAC 2 cut(s) 290, 1091
MalI GATC 2 cut(s) 83, 468
MboI GATC 2 cut(s) 81, 466
MboII GAAGA 9 cut(s) 409, 554, 610, 710, 766, 769, 947, 1007, 1063
MfeI CAATTG 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 404
MlyI GAGTC 2 cut(s) 319, 640
MnlI CCTC 8 cut(s) 287, 387, 513, 588, 661, 670, 952, 991
MreI CGCCGGCG 1 cut(s) 642
MroNI GCCGGC 2 cut(s) 50, 642
MroXI GAANNNNTTC 1 cut(s) 864
MseI TTAA 2 cut(s) 165, 822
MslI CAYNNNNRTG 1 cut(s) 216
MspA1I CMGCKG 2 cut(s) 282, 625
MspI CCGG 4 cut(s) 51, 66, 603, 643
MspR9I CCNGG 1 cut(s) 315
MunI CAATTG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 3 cut(s) 282, 437, 471
MwoI GCNNNNNNNGC 4 cut(s) 154, 677, 715, 938
NaeI GCCGGC 2 cut(s) 52, 644
NdeII GATC 2 cut(s) 81, 466
NgoMIV GCCGGC 2 cut(s) 50, 642
NlaIII CATG 3 cut(s) 215, 338, 1166
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 290
PceI AGGCCT 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 392
PdiI GCCGGC 2 cut(s) 52, 644
PdmI GAANNNNTTC 1 cut(s) 864
PfeI GAWTC 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 421
PinAI ACCGGT 1 cut(s) 602
PkrI GCNGC 7 cut(s) 90, 610, 621, 624, 648, 717, 954
PleI GAGTC 2 cut(s) 318, 639
PpsI GAGTC 2 cut(s) 318, 639
PsiI TTATAA 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 48
PstNI CAGNNNCTG 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 625
RsaI GTAC 4 cut(s) 749, 906, 1057, 1194
RsaNI GTAC 4 cut(s) 748, 905, 1056, 1193
RseI CAYNNNNRTG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 404
SacII CCGCGG 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 392
SaqAI TTAA 2 cut(s) 165, 822
SatI GCNGC 7 cut(s) 89, 609, 620, 623, 647, 716, 953
Sau3AI GATC 2 cut(s) 81, 466
Sau96I GGNCC 1 cut(s) 48
ScaI AGTACT 1 cut(s) 749
SchI GAGTC 2 cut(s) 319, 640
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 404
SfaNI GCATC 1 cut(s) 1035
SfcI CTRYAG 1 cut(s) 686
SfiI GGCCNNNNNGGCC 1 cut(s) 677
Sfr303I CCGCGG 1 cut(s) 283
SgrAI CRCCGGYG 1 cut(s) 642
SgrBI CCGCGG 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 2 cut(s) 710, 943
SmoI CTYRAG 2 cut(s) 710, 943
SseBI AGGCCT 1 cut(s) 276
SsiI CCGC 9 cut(s) 12, 54, 280, 282, 608, 640, 646, 716, 953
SstI GAGCTC 1 cut(s) 404
StuI AGGCCT 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 2 cut(s) 575, 856
TaiI ACGT 1 cut(s) 727
TaqI TCGA 1 cut(s) 408
TaqII GACCGA 1 cut(s) 111
TatI WGTACW 4 cut(s) 747, 904, 1055, 1192
TauI GCSGC 4 cut(s) 611, 649, 718, 955
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 165, 822
Tru9I TTAA 2 cut(s) 165, 822
TscAI CASTG 3 cut(s) 159, 325, 1205
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 3 cut(s) 88, 619, 622
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 7 cut(s) 234, 323, 776, 857, 902, 1028, 1113
TspGWI ACGGA 2 cut(s) 51, 908
TspRI CASTG 3 cut(s) 159, 325, 1205
Van91I CCANNNNNTGG 1 cut(s) 421
XapI RAATTY 4 cut(s) 230, 458, 787, 896
XmnI GAANNNNTTC 1 cut(s) 864
ZrmI AGTACT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.