Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003111

Physical Location & Seq

Genomic Coordinates Reverse (-)

9293135 .. 9294578

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G118200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGAATTGGCTGGTGGATATACAGCGAAGGACCAGAGCAAGGTGAAGCACCTTCATGGTGGAAGGATGGGATTGGATTCCGAGACTCATTTGGTGATCAAGCTTCCTGATTCCAAGGTATTGCGCATTATTTCAAGGTCTGTTTTTTTGGGTTTGGTTATTCTCACACTGCCCTGCATTGGGTCCCTTTTGAGGGGAGTAAGTGTTTCTGAATTAAAATATGATACTCAATCTGAAATTTTCAATTTTGAGCAATTGGGTCAGCTTTTCCATGATTTAGCTGGTGAAGGCCTTCGCAGAAAAAGTGACAAAGCTCTCATTGTGAGCCCGGTCAATGTTGGTATGATTCACAATCTTCATCCTTTTGATTATAATGTATTTGACATTGTTATGGATTCGGATTTGGAGCGAAAAAGCTCATTCTTGGACGAGTCTTGGGATTTTGTTTTCGCATTCAACTTGGTTGATGCTAAATTTGTAGATCGCATTTTGAAGATTGGTGGCATTGTGGCTGTTCCATTAAGCAATGACCCTTCAAATGCTTTTAAACCGAAACCCAATTACAAGATAGTGTATCTTCGTCGATATGCTTCCACCTTTGTGGCAATGAGGAAAACCAGCCCGTCTTATGATTTGGCGGTGAAGTCTAGGCGGCTTTGCCAATTCGAAACTAAGGCCAAGAAGACAGTGTTTAAAGATGTGGTGCTTGAGCCACCGAGACGTGTGTTGGCTAAATCAAATGAGTACTTGAAGAAGATCAAGTTCCTTCCTAACTTGTTGGGTGATTCTCTTCCAGGTTATGACCGCCGAGTGTTTGTTAATGTGGATTCAAATGAGGACAACAGCGTAGAGCCTGAAGAAGCTTCAAGCACAGTGGTGGCACTGCCACGAAATGATTTATCGGATTGGCTAAAGGAAAATGTGAGGGAAGAGGACTATGTTGTGATGAAAGCAGAAGCAGAAATGGTTGTGGAAATGATAAAGAAGAAGACAATCTGCTTGGTAGATGAATTGTTTTTGGAGTGCAATAATGGATGGTGGCAGAAAAATGGAAAGACGTATGGTAGCAAAAGGGCTTATTGGGAATGCATTGCTTTGTATGGAAGGGTGAGGGATCTAGGAGTTGCTGTACACCAGTGGTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

383

Amino Acids

43.53

Weight (kDa)

8.58

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47320 AT3G66654 AT3G66654 AT3G66654 AT3G66654 AT3G66654
fragaria_vesca	FvH4_4g19620 FvH4_4g19630
malus_domestica	MD13G1155100.v1.1 MD13G1155200.v1.1 MD16G1154600.v1.1 MD16G1154700.v1.1
prunus_persica	Prupe.1G118100_v2.0.a1 Prupe.1G118100_v2.0.a1 Prupe.1G118200_v2.0.a1
pyrus_communis	pycom13g13190 pycom13g13200 pycom16g13100 pycom16g13110
rosa_chinensis	RchiOBHm_Chr4g0424881 RchiOBHm_Chr4g0424891
rosa_laevigata	RLG00000007412
rosa_multiflora	Rmu_co8066912.1_g000001 Rmu_sc0006754.1_g000003 Rmu_sc0033998.1_g000001
rosa_rugosa	Rorug04G0200300 Rorug04G0200400
rosa_samantha	Rh4AG257700 Rh4AG257800 Rh4BG263100 Rh4BG263200 Rh4CG274100 Rh4CG274200 Rh4DG258800 Rh4DG258900
rosa_wichuraiana	Rw4G022240 Rw4G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
Acc16I	TGCGCA	1 cut(s)	125
AciI	CCGC	3 cut(s)	638, 652, 805
AclWI	GGATC	1 cut(s)	1122
AcsI	RAATTY	2 cut(s)	237, 473
AcuI	CTGAAG	1 cut(s)	876
AfaI	GTAC	2 cut(s)	746, 1131
AfiI	CCNNNNNNNGG	5 cut(s)	40, 179, 180, 192, 193
AflIII	ACRYGT	1 cut(s)	721
AgsI	TTSAA	8 cut(s)	135, 244, 457, 493, 537, 751, 831, 867
AjiI	CACGTC	1 cut(s)	722
AjnI	CCWGG	1 cut(s)	793
AleI	CACNNNNGTG	2 cut(s)	599, 875
AluBI	AGCT	6 cut(s)	103, 265, 281, 314, 417, 863
AluI	AGCT	6 cut(s)	103, 265, 281, 314, 417, 863
Alw26I	GTCTC	2 cut(s)	77, 712
AlwI	GGATC	1 cut(s)	1122
AoxI	GGCC	2 cut(s)	289, 675
ApoI	RAATTY	2 cut(s)	237, 473
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	31, 183
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	6 cut(s)	55, 106, 296, 652, 794, 1120
AsuII	TTCGAA	1 cut(s)	666
AvaII	GGWCC	2 cut(s)	31, 183
BanII	GRGCYC	1 cut(s)	329
BbsI	GAAGAC	2 cut(s)	689, 995
BccI	CCATC	2 cut(s)	61, 1029
BciT130I	CCWGG	1 cut(s)	795
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	77, 712
BfaI	CTAG	2 cut(s)	648, 1118
BisI	GCNGC	1 cut(s)	653
BlsI	GCNGC	1 cut(s)	654
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	2 cut(s)	329, 795
Bme18I	GGWCC	2 cut(s)	31, 183
BmgBI	CACGTC	1 cut(s)	722
BmgT120I	GGNCC	2 cut(s)	31, 183
BmiI	GGNNCC	2 cut(s)	184, 185
BmrFI	CCNGG	2 cut(s)	329, 795
BmsI	GCATC	1 cut(s)	457
BpiI	GAAGAC	2 cut(s)	689, 995
Bpu14I	TTCGAA	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	728
BpuMI	CCSGG	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 1113, 1143
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 179, 180, 192, 193
Bse1I	ACTGG	1 cut(s)	1135
Bse3DI	GCAATG	3 cut(s)	532, 612, 1089
BseBI	CCWGG	1 cut(s)	795
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	3 cut(s)	72, 358, 1040
BseLI	CCNNNNNNNGG	5 cut(s)	40, 179, 180, 192, 193
BseMI	GCAATG	3 cut(s)	532, 612, 1089
BseNI	ACTGG	1 cut(s)	1135
BshFI	GGCC	2 cut(s)	291, 677
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	5 cut(s)	40, 179, 180, 192, 193
BsmAI	GTCTC	2 cut(s)	77, 712
BsmBI	CGTCTC	1 cut(s)	712
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	2 cut(s)	452, 1091
BsnI	GGCC	2 cut(s)	291, 677
Bsp119I	TTCGAA	1 cut(s)	666
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp1407I	TGTACA	1 cut(s)	1129
Bsp143I	GATC	4 cut(s)	96, 481, 756, 1114
BspACI	CCGC	3 cut(s)	638, 652, 805
BspANI	GGCC	2 cut(s)	291, 677
BspLI	GGNNCC	2 cut(s)	184, 185
BspPI	GGATC	1 cut(s)	1122
BspT104I	TTCGAA	1 cut(s)	666
BsrDI	GCAATG	3 cut(s)	532, 612, 1089
BsrGI	TGTACA	1 cut(s)	1129
BsrI	ACTGG	1 cut(s)	1135
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	4 cut(s)	96, 481, 756, 1114
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	795
Bst4CI	ACNGT	2 cut(s)	688, 874
Bst6I	CTCTTC	2 cut(s)	795, 924
BstAUI	TGTACA	1 cut(s)	1129
BstBI	TTCGAA	1 cut(s)	666
BstDEI	CTNAG	1 cut(s)	672
BstF5I	GGATG	3 cut(s)	72, 358, 1040
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	4 cut(s)	99, 484, 759, 1117
BstMAI	GTCTC	2 cut(s)	77, 712
BstMBI	GATC	4 cut(s)	96, 481, 756, 1114
BstNI	CCWGG	1 cut(s)	795
BstSCI	CCNGG	2 cut(s)	327, 793
BstV2I	GAAGAC	2 cut(s)	689, 995
BstX2I	RGATCY	1 cut(s)	1114
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	1114
BsuRI	GGCC	2 cut(s)	291, 677
BtrI	CACGTC	1 cut(s)	722
BtsCI	GGATG	3 cut(s)	72, 358, 1040
BtsI	GCAGTG	2 cut(s)	167, 881
BtsIMutI	CAGTG	5 cut(s)	167, 693, 879, 881, 1142
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	31, 183
Csp6I	GTAC	2 cut(s)	745, 1130
CspCI	CAANNNNNGTGG	2 cut(s)	855, 890
CviAII	CATG	2 cut(s)	56, 272
CviQI	GTAC	2 cut(s)	745, 1130
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	4 cut(s)	98, 483, 758, 1116
DpnII	GATC	4 cut(s)	96, 481, 756, 1114
DraI	TTTAAA	2 cut(s)	547, 694
Eam1104I	CTCTTC	2 cut(s)	795, 924
EarI	CTCTTC	2 cut(s)	795, 924
Eco130I	CCWWGG	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	2 cut(s)	31, 183
Eco57I	CTGAAG	1 cut(s)	876
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	793
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	1091
EcoT38I	GRGCYC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	712
FaeI	CATG	2 cut(s)	59, 275
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	55, 271
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	653
FokI	GGATG	3 cut(s)	79, 345, 1047
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	653
FspBI	CTAG	2 cut(s)	648, 1118
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	653
HaeIII	GGCC	2 cut(s)	291, 677
HapII	CCGG	1 cut(s)	329
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	59, 275
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HindIII	AAGCTT	2 cut(s)	101, 861
HinfI	GANTC	8 cut(s)	77, 85, 110, 346, 395, 431, 785, 827
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	6 cut(s)	55, 106, 296, 652, 794, 1120
Hpy166II	GTNNAC	1 cut(s)	1132
Hpy188I	TCNGA	5 cut(s)	82, 211, 235, 400, 904
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	1132
Hpy99I	CGWCG	1 cut(s)	585
HpyAV	CCTTC	8 cut(s)	22, 57, 62, 281, 302, 543, 776, 1098
HpyCH4III	ACNGT	2 cut(s)	688, 874
HpyCH4IV	ACGT	2 cut(s)	721, 1058
HpyCH4V	TGCA	3 cut(s)	177, 1026, 1089
HpyF3I	CTNAG	1 cut(s)	672
HpySE526I	ACGT	2 cut(s)	721, 1058
Hsp92II	CATG	2 cut(s)	59, 275
HspAI	GCGC	1 cut(s)	124
KflI	GGGWCCC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	4 cut(s)	96, 481, 756, 1114
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	9 cut(s)	47, 120, 187, 267, 342, 631, 780, 807, 867
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	2 cut(s)	648, 1118
MaeII	ACGT	2 cut(s)	721, 1058
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	4 cut(s)	98, 483, 758, 1116
MboI	GATC	4 cut(s)	96, 481, 756, 1114
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	1 cut(s)	1114
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	9 cut(s)	5, 212, 237, 244, 254, 473, 559, 662, 1010
MlyI	GAGTC	2 cut(s)	79, 440
MnlI	CCTC	6 cut(s)	186, 603, 829, 918, 925, 1104
Mph1103I	ATGCAT	1 cut(s)	1091
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	5 cut(s)	215, 521, 546, 693, 819
MslI	CAYNNNNRTG	4 cut(s)	54, 389, 599, 875
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	329, 795
MunI	CAATTG	1 cut(s)	254
Mva1269I	GAATGC	2 cut(s)	452, 1091
MvaI	CCWGG	1 cut(s)	795
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	4 cut(s)	96, 481, 756, 1114
NlaIII	CATG	2 cut(s)	59, 275
NlaIV	GGNNCC	2 cut(s)	184, 185
NmeAIII	GCCGAG	1 cut(s)	833
NmuCI	GTSAC	1 cut(s)	305
NsbI	TGCGCA	1 cut(s)	125
NsiI	ATGCAT	1 cut(s)	1091
NspV	TTCGAA	1 cut(s)	666
OliI	CACNNNNGTG	2 cut(s)	599, 875
PceI	AGGCCT	1 cut(s)	291
PctI	GAATGC	2 cut(s)	452, 1091
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	6 cut(s)	77, 110, 346, 395, 785, 827
PkrI	GCNGC	1 cut(s)	654
PleI	GAGTC	2 cut(s)	79, 439
PpsI	GAGTC	2 cut(s)	79, 439
PpuMI	RGGWCCY	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	793
PspN4I	GGNNCC	2 cut(s)	184, 185
PspPI	GGNCC	2 cut(s)	31, 183
PspPPI	RGGWCCY	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	1114
RsaI	GTAC	2 cut(s)	746, 1131
RsaNI	GTAC	2 cut(s)	745, 1130
RseI	CAYNNNNRTG	4 cut(s)	54, 389, 599, 875
SaqAI	TTAA	5 cut(s)	215, 521, 546, 693, 819
SatI	GCNGC	1 cut(s)	653
Sau3AI	GATC	4 cut(s)	96, 481, 756, 1114
Sau96I	GGNCC	2 cut(s)	31, 183
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	2 cut(s)	79, 440
ScrFI	CCNGG	2 cut(s)	329, 795
SduI	GDGCHC	1 cut(s)	329
SfaNI	GCATC	1 cut(s)	457
SfuI	TTCGAA	1 cut(s)	666
SinI	GGWCC	2 cut(s)	31, 183
SmiMI	CAYNNNNRTG	4 cut(s)	54, 389, 599, 875
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	9 cut(s)	5, 212, 237, 244, 254, 473, 559, 662, 1010
SseBI	AGGCCT	1 cut(s)	291
SsiI	CCGC	3 cut(s)	638, 652, 805
SspMI	CTAG	2 cut(s)	648, 1118
StuI	AGGCCT	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	327, 793
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	688, 874
TaiI	ACGT	2 cut(s)	724, 1061
TaqI	TCGA	2 cut(s)	583, 666
TasI	AATT	9 cut(s)	5, 212, 237, 244, 254, 473, 559, 662, 1010
TatI	WGTACW	2 cut(s)	744, 1129
TauI	GCSGC	1 cut(s)	655
TfiI	GAWTC	6 cut(s)	77, 110, 346, 395, 785, 827
Tru1I	TTAA	5 cut(s)	215, 521, 546, 693, 819
Tru9I	TTAA	5 cut(s)	215, 521, 546, 693, 819
TscAI	CASTG	5 cut(s)	174, 693, 879, 888, 1142
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	4 cut(s)	44, 347, 962, 1023
TspRI	CASTG	5 cut(s)	174, 693, 879, 888, 1142
VpaK11BI	GGWCC	2 cut(s)	31, 183
XapI	RAATTY	2 cut(s)	237, 473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	2 cut(s)	648, 1118
ZrmI	AGTACT	1 cut(s)	746
Zsp2I	ATGCAT	1 cut(s)	1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.