Rw4G022250

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0003111
Physical Location & Seq
Forward (+)
47461598 .. 47464539
2942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G022250.1

Sequence Viewer

Length: 699 bp
ATGGCTCGGATAAAGCCCCAGGCTCTGTTACTTCAGAGCAAGAAGAAAAAAGGACCGACTCGAATCAGTGTCACTACCATAGTTCTGTGCAATCTAATCATCGCTTTGATCGCCTTGTCCTTGGTCGCCACTTATCGCTATTGGTCCAGAAGGTCACTGGATCATTCTGGGTCTGACTTTTCTGCTGCAGAGGAAATGGATGCGTTTTCGAAGAAGGATGATCTTCCCGGTTATGCTATTTTAAACACATCAAAAGGTTTAATCACAGTGGAACTTTACAAGGATGGTTCTCCAGAGGTTGTGGATAGATTTCTTGACTTGTGTCAAAAGGGACACTTCAAAGGGATGCCCTTCAGTCATGTAATCAAACACTACGTAATTAAAGGAGGAGATTCCCAGGGACTTGGAGTGGCTGAAGATTGGATATCAAAAGGGAAGCTTCGTAGTCAACTTGTGACGAGTCCAAAGCATGAAGCTTTTATGCTTGGAACTACGAAGAATAAACTAGAGAACAAAGGATTTGAGCTTGTTATCACGACGGCACCTATACCAGATTTAAATGACAAGCTTATTGTGTTTGGACGTGTCATCAAAGGAGAGGATGTGGTGCAGGAAATTGAAGAGGTTGATACAGATGAACATTATCGGCCTAAATCTCATGTAGGGATCACCAGTGTGACTCTAAAACGTGAGATATAA

Protein Analysis

232

Amino Acids

25.84

Weight (kDa)

8.9

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 81 - 227 1.2e-29 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 541
AclWI GGATC 2 cut(s) 168, 674
AcuI CTGAAG 3 cut(s) 17, 337, 435
AflIII ACRYGT 1 cut(s) 583
AgsI TTSAA 2 cut(s) 340, 620
AjiI CACGTC 1 cut(s) 584
AjnI CCWGG 2 cut(s) 18, 396
AleI CACNNNNGTG 1 cut(s) 674
AluBI AGCT 4 cut(s) 439, 476, 526, 568
AluI AGCT 4 cut(s) 439, 476, 526, 568
AlwI GGATC 2 cut(s) 168, 674
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 1 cut(s) 185
AspS9I GGNCC 2 cut(s) 53, 144
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 661
AsuII TTCGAA 1 cut(s) 209
AvaII GGWCC 2 cut(s) 53, 144
BanI GGYRCC 1 cut(s) 541
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 555
BciT130I CCWGG 2 cut(s) 20, 398
BcnI CCSGG 1 cut(s) 228
BfaI CTAG 1 cut(s) 506
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 3 cut(s) 20, 228, 398
Bme18I GGWCC 2 cut(s) 53, 144
BmgBI CACGTC 1 cut(s) 584
BmgT120I GGNCC 2 cut(s) 53, 144
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 3 cut(s) 20, 228, 398
BmsI GCATC 2 cut(s) 190, 336
BoxI GACNNNNGTC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 376
BsaJI CCNNGG 4 cut(s) 18, 120, 396, 397
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bse1I ACTGG 2 cut(s) 162, 672
BseBI CCWGG 2 cut(s) 20, 398
BseDI CCNNGG 4 cut(s) 18, 120, 396, 397
BseGI GGATG 5 cut(s) 205, 223, 289, 351, 607
BseNI ACTGG 2 cut(s) 162, 672
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 629
BshFI GGCC 1 cut(s) 649
BshNI GGYRCC 1 cut(s) 541
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 345, 414
BsmFI GGGAC 2 cut(s) 345, 414
BsnI GGCC 1 cut(s) 649
Bsp119I TTCGAA 1 cut(s) 209
Bsp143I GATC 4 cut(s) 108, 160, 220, 666
BspANI GGCC 1 cut(s) 649
BspLI GGNNCC 1 cut(s) 543
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 2 cut(s) 168, 674
BspT104I TTCGAA 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 541
BsrI ACTGG 2 cut(s) 162, 672
BssECI CCNNGG 4 cut(s) 18, 120, 396, 397
BssMI GATC 4 cut(s) 108, 160, 220, 666
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 20, 398
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 615
BstBAI YACGTR 1 cut(s) 376
BstBI TTCGAA 1 cut(s) 209
BstF5I GGATG 5 cut(s) 205, 223, 289, 351, 607
BstKTI GATC 4 cut(s) 111, 163, 223, 669
BstMBI GATC 4 cut(s) 108, 160, 220, 666
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 20, 398
BstPAI GACNNNNGTC 1 cut(s) 321
BstSCI CCNGG 3 cut(s) 18, 226, 396
BstSFI CTRYAG 1 cut(s) 186
BstSNI TACGTA 1 cut(s) 376
BstV1I GCAGC 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 404
BsuRI GGCC 1 cut(s) 649
BtgZI GCGATG 1 cut(s) 85
BtrI CACGTC 1 cut(s) 584
BtsCI GGATG 5 cut(s) 205, 223, 289, 351, 607
BtsIMutI CAGTG 4 cut(s) 73, 155, 273, 679
CaiI CAGNNNCTG 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 53, 144
CviAII CATG 3 cut(s) 359, 470, 659
CviJI RGCY 9 cut(s) 5, 16, 23, 413, 439, 476, 526, 568, 649
CviKI_1 RGCY 9 cut(s) 5, 16, 23, 413, 439, 476, 526, 568, 649
DpnI GATC 4 cut(s) 110, 162, 222, 668
DpnII GATC 4 cut(s) 108, 160, 220, 666
DraI TTTAAA 2 cut(s) 243, 558
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco105I TACGTA 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 120
Eco32I GATATC 1 cut(s) 426
Eco47I GGWCC 2 cut(s) 53, 144
Eco57I CTGAAG 3 cut(s) 17, 337, 435
EcoRII CCWGG 2 cut(s) 18, 396
EcoRV GATATC 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 3 cut(s) 362, 473, 662
FaiI YATR 8 cut(s) 80, 234, 360, 471, 482, 548, 660, 697
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 423, 455
FaqI GGGAC 2 cut(s) 345, 414
FatI CATG 3 cut(s) 358, 469, 658
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 5 cut(s) 212, 230, 296, 358, 614
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 506
GluI GCNGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 649
HapII CCGG 1 cut(s) 228
Hin1II CATG 3 cut(s) 362, 473, 662
HincII GTYRAC 1 cut(s) 449
HindII GTYRAC 1 cut(s) 449
HindIII AAGCTT 3 cut(s) 437, 474, 566
HinfI GANTC 5 cut(s) 58, 63, 392, 460, 679
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 3 cut(s) 9, 36, 175
Hpy188III TCNNGA 4 cut(s) 147, 293, 314, 535
Hpy8I GTNNAC 1 cut(s) 449
Hpy99I CGWCG 1 cut(s) 541
HpyAV CCTTC 3 cut(s) 144, 208, 361
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 3 cut(s) 375, 583, 688
HpyCH4V TGCA 3 cut(s) 90, 188, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 3 cut(s) 375, 583, 688
Hsp92II CATG 3 cut(s) 362, 473, 662
Kzo9I GATC 4 cut(s) 108, 160, 220, 666
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 190, 336
MaeI CTAG 1 cut(s) 506
MaeII ACGT 3 cut(s) 375, 583, 688
MaeIII GTNAC 5 cut(s) 27, 70, 153, 454, 676
MalI GATC 4 cut(s) 110, 162, 222, 668
MboI GATC 4 cut(s) 108, 160, 220, 666
MboII GAAGA 6 cut(s) 55, 215, 223, 428, 508, 632
MluCI AATT 2 cut(s) 378, 615
MlyI GAGTC 3 cut(s) 52, 469, 673
MnlI CCTC 5 cut(s) 184, 289, 380, 592, 616
MseI TTAA 4 cut(s) 242, 260, 381, 557
MslI CAYNNNNRTG 1 cut(s) 674
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 3 cut(s) 20, 228, 398
MvaI CCWGG 2 cut(s) 20, 398
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 228
NdeII GATC 4 cut(s) 108, 160, 220, 666
NlaIII CATG 3 cut(s) 362, 473, 662
NlaIV GGNNCC 1 cut(s) 543
NmuCI GTSAC 4 cut(s) 70, 153, 454, 676
NspV TTCGAA 1 cut(s) 209
OliI CACNNNNGTG 1 cut(s) 674
PasI CCCWGGG 1 cut(s) 397
PfeI GAWTC 2 cut(s) 63, 392
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 3 cut(s) 52, 468, 673
PpsI GAGTC 3 cut(s) 52, 468, 673
Ppu21I YACGTR 1 cut(s) 376
PshAI GACNNNNGTC 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 18, 396
PspGI CCWGG 2 cut(s) 18, 396
PspN4I GGNNCC 1 cut(s) 543
PspPI GGNCC 2 cut(s) 53, 144
PstI CTGCAG 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 674
SaqAI TTAA 4 cut(s) 242, 260, 381, 557
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 4 cut(s) 108, 160, 220, 666
Sau96I GGNCC 2 cut(s) 53, 144
SchI GAGTC 3 cut(s) 52, 469, 673
ScrFI CCNGG 3 cut(s) 20, 228, 398
SfaNI GCATC 2 cut(s) 190, 336
SfcI CTRYAG 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 209
SinI GGWCC 2 cut(s) 53, 144
SmiI ATTTAAAT 1 cut(s) 558
SmiMI CAYNNNNRTG 1 cut(s) 674
SnaBI TACGTA 1 cut(s) 376
Sse9I AATT 2 cut(s) 378, 615
SspMI CTAG 1 cut(s) 506
StyD4I CCNGG 3 cut(s) 18, 226, 396
StyI CCWWGG 1 cut(s) 120
SwaI ATTTAAAT 1 cut(s) 558
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 3 cut(s) 378, 586, 691
TaqI TCGA 2 cut(s) 61, 209
TaqII GACCGA 1 cut(s) 70
TasI AATT 2 cut(s) 378, 615
TfiI GAWTC 2 cut(s) 63, 392
Tru1I TTAA 4 cut(s) 242, 260, 381, 557
Tru9I TTAA 4 cut(s) 242, 260, 381, 557
TscAI CASTG 4 cut(s) 73, 162, 273, 679
TseFI GTSAC 4 cut(s) 70, 153, 454, 676
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 4 cut(s) 70, 153, 454, 676
TspDTI ATGAA 2 cut(s) 486, 651
TspRI CASTG 4 cut(s) 73, 162, 273, 679
VpaK11BI GGWCC 2 cut(s) 53, 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.