Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003111

Physical Location & Seq

Genomic Coordinates Reverse (-)

9289345 .. 9292431

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G118100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTCGGATAAAGCCTCAGGCGCTGTTAATTCAGAGCAAAAAGAAGAAGGGCCCAACTCGAATCAGTATCACTACCATAGTTATGTGCAATTTAATCATCGCTTTGATCGCCTTGTCCTTAGTTGCCACTTATCGCTATTGGTCTAGAAGGTCGCTGGACCAATCTGGGTCGGACTTATCTACTCTAGAGGATATTGGTGGGTTAGTAAAGAAGTACGATCTTCCCGGTTATGCTATTCTAAATACGTCAAAAGGTCCTATCACAGTGGAACTTTTCAAGGATGGTTCTCCAGAGGTTGTGGATAGATTTCTTGACTTATGTCAAAAGGGGCACTTTAAGGGGATGCCCTTCAGTCATGTGATCAAACACTACGTTATTAAAGGGGGAGGTTCCCAAGGACTTGGAGCAGCTGAAGATTGGATATCAAAAGGGAAGCTTCGTAGTCAACTAGTTATGAGACCAAAGCATGAAGCTTTTATGCTTGGAACTACAAAGAATAGACTAGATGACAAAGGATTTGAGCTTGTTATCACAACTGCACCAATACCAGATTTAAATGATAAGCTGATTGTGTTTGGACGGGTCATTAAGGGAGAGGATGTGGTGCAGGAAATTGAAGAGGTCGATACAGATGAACATTATCGGCCTAAATCTTCTGTAGGGATCACTAGTGTGATTCTGAAACGTGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

233

Amino Acids

25.78

Weight (kDa)

9.3

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47320 AT3G66654 AT3G66654 AT3G66654 AT3G66654 AT3G66654
fragaria_vesca	FvH4_4g19620 FvH4_4g19630
malus_domestica	MD13G1155100.v1.1 MD13G1155200.v1.1 MD16G1154600.v1.1 MD16G1154700.v1.1
prunus_persica	Prupe.1G118100_v2.0.a1 Prupe.1G118100_v2.0.a1 Prupe.1G118200_v2.0.a1
pyrus_communis	pycom13g13190 pycom13g13200 pycom16g13100 pycom16g13110
rosa_chinensis	RchiOBHm_Chr4g0424881 RchiOBHm_Chr4g0424891
rosa_laevigata	RLG00000007412
rosa_multiflora	Rmu_co8066912.1_g000001 Rmu_sc0006754.1_g000003 Rmu_sc0033998.1_g000001
rosa_rugosa	Rorug04G0200300 Rorug04G0200400
rosa_samantha	Rh4AG257700 Rh4AG257800 Rh4BG263100 Rh4BG263200 Rh4CG274100 Rh4CG274200 Rh4DG258800 Rh4DG258900
rosa_wichuraiana	Rw4G022240 Rw4G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	674
AcuI	CTGAAG	2 cut(s)	337, 435
AfaI	GTAC	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	280, 620
AhlI	ACTAGT	2 cut(s)	451, 671
AleI	CACNNNNGTG	1 cut(s)	674
AluBI	AGCT	5 cut(s)	413, 439, 476, 526, 568
AluI	AGCT	5 cut(s)	413, 439, 476, 526, 568
Alw26I	GTCTC	1 cut(s)	454
AlwI	GGATC	1 cut(s)	674
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	52, 647
ApaI	GGGCCC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	410
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	4 cut(s)	52, 53, 160, 257
AsuC2I	CCSGG	1 cut(s)	228
AvaII	GGWCC	2 cut(s)	160, 257
AxyI	CCTNAGG	1 cut(s)	18
BaeGI	GKGCMC	2 cut(s)	56, 336
BanII	GRGCYC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	422
BccI	CCATC	1 cut(s)	278
BclI	TGATCA	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	454
BcuI	ACTAGT	2 cut(s)	451, 671
BfaI	CTAG	5 cut(s)	147, 188, 452, 506, 672
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	2 cut(s)	160, 257
BmgT120I	GGNCC	4 cut(s)	52, 53, 160, 257
BmiI	GGNNCC	2 cut(s)	54, 394
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	336
BoxI	GACNNNNGTC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bse21I	CCTNAGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	3 cut(s)	289, 351, 607
BseMII	CTCAG	1 cut(s)	32
BseSI	GKGCMC	2 cut(s)	56, 336
BseXI	GCAGC	1 cut(s)	422
BsgI	GTGCAG	2 cut(s)	525, 629
BshFI	GGCC	2 cut(s)	54, 649
BsiSI	CCGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	54, 649
Bso31I	GGTCTC	1 cut(s)	454
Bsp120I	GGGCCC	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	56, 336
Bsp143I	GATC	4 cut(s)	108, 220, 363, 666
BspANI	GGCC	2 cut(s)	54, 649
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	54, 394
BspPI	GGATC	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	454
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	4 cut(s)	108, 220, 363, 666
BssT1I	CCWWGG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	615
BstDEI	CTNAG	2 cut(s)	18, 121
BstF5I	GGATG	3 cut(s)	289, 351, 607
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	4 cut(s)	111, 223, 366, 669
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	4 cut(s)	108, 220, 363, 666
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 110
BstPAI	GACNNNNGTC	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	2 cut(s)	56, 336
BstV1I	GCAGC	1 cut(s)	422
BstXI	CCANNNNNNTGG	1 cut(s)	404
Bsu36I	CCTNAGG	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	54, 649
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	289, 351, 607
BtsIMutI	CAGTG	1 cut(s)	273
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	4 cut(s)	52, 53, 160, 257
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	359, 470
CviJI	RGCY	9 cut(s)	5, 16, 54, 413, 439, 476, 526, 568, 649
CviKI_1	RGCY	9 cut(s)	5, 16, 54, 413, 439, 476, 526, 568, 649
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	18, 121
DpnI	GATC	4 cut(s)	110, 222, 365, 668
DpnII	GATC	4 cut(s)	108, 220, 363, 666
DraI	TTTAAA	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Eco130I	CCWWGG	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	160, 257
Eco57I	CTGAAG	2 cut(s)	337, 435
Eco81I	CCTNAGG	1 cut(s)	18
EcoO109I	RGGNCCY	2 cut(s)	52, 257
EcoRV	GATATC	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	2 cut(s)	362, 473
FaiI	YATR	8 cut(s)	80, 86, 234, 322, 360, 458, 471, 482
FalI	AAGNNNNNCTT	4 cut(s)	320, 352, 423, 455
FatI	CATG	2 cut(s)	358, 469
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	3 cut(s)	296, 358, 614
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	5 cut(s)	147, 188, 452, 506, 672
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	54, 649
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	362, 473
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	449
HindII	GTYRAC	1 cut(s)	449
HindIII	AAGCTT	2 cut(s)	437, 474
HinfI	GANTC	2 cut(s)	63, 679
HpaII	CCGG	1 cut(s)	228
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	9, 36, 175, 684
Hpy188III	TCNNGA	4 cut(s)	147, 188, 293, 314
Hpy8I	GTNNAC	1 cut(s)	449
HpyAV	CCTTC	3 cut(s)	43, 144, 361
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	3 cut(s)	248, 375, 688
HpyCH4V	TGCA	3 cut(s)	90, 542, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 110
HpyF3I	CTNAG	2 cut(s)	18, 121
HpySE526I	ACGT	3 cut(s)	248, 375, 688
Hsp92II	CATG	2 cut(s)	362, 473
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	4 cut(s)	108, 220, 363, 666
LmnI	GCTCC	1 cut(s)	407
LpnPI	CCDG	7 cut(s)	5, 143, 153, 241, 306, 564, 596
Lsp1109I	GCAGC	1 cut(s)	422
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	5 cut(s)	147, 188, 452, 506, 672
MaeII	ACGT	3 cut(s)	248, 375, 688
MalI	GATC	4 cut(s)	110, 222, 365, 668
MboI	GATC	4 cut(s)	108, 220, 363, 666
MboII	GAAGA	5 cut(s)	58, 215, 428, 632, 648
MhlI	GDGCHC	2 cut(s)	56, 336
MluCI	AATT	3 cut(s)	30, 91, 615
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	6 cut(s)	27, 184, 289, 383, 592, 616
MseI	TTAA	7 cut(s)	29, 95, 339, 381, 557, 591, 697
MslI	CAYNNNNRTG	2 cut(s)	83, 674
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	22, 110
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	4 cut(s)	108, 220, 363, 666
NlaIII	CATG	2 cut(s)	362, 473
NlaIV	GGNNCC	2 cut(s)	54, 394
OliI	CACNNNNGTG	1 cut(s)	674
PfeI	GAWTC	2 cut(s)	63, 679
PkrI	GCNGC	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	257
PshAI	GACNNNNGTC	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	54, 394
PspOMI	GGGCCC	1 cut(s)	52
PspPI	GGNCC	4 cut(s)	52, 53, 160, 257
PspPPI	RGGWCCY	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	83, 674
SaqAI	TTAA	7 cut(s)	29, 95, 339, 381, 557, 591, 697
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	4 cut(s)	108, 220, 363, 666
Sau96I	GGNCC	4 cut(s)	52, 53, 160, 257
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	2 cut(s)	56, 336
SfaNI	GCATC	1 cut(s)	336
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	2 cut(s)	160, 257
SmiI	ATTTAAAT	1 cut(s)	558
SmiMI	CAYNNNNRTG	2 cut(s)	83, 674
SpeI	ACTAGT	2 cut(s)	451, 671
Sse9I	AATT	3 cut(s)	30, 91, 615
SspMI	CTAG	5 cut(s)	147, 188, 452, 506, 672
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	397
SwaI	ATTTAAAT	1 cut(s)	558
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	3 cut(s)	251, 378, 691
TaqI	TCGA	2 cut(s)	61, 627
TasI	AATT	3 cut(s)	30, 91, 615
TfiI	GAWTC	2 cut(s)	63, 679
Tru1I	TTAA	7 cut(s)	29, 95, 339, 381, 557, 591, 697
Tru9I	TTAA	7 cut(s)	29, 95, 339, 381, 557, 591, 697
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	486, 651
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	2 cut(s)	160, 257
XbaI	TCTAGA	2 cut(s)	146, 187
XspI	CTAG	5 cut(s)	147, 188, 452, 506, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.