Rh4BG263200

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003111
Physical Location & Seq
Forward (+)
43594504 .. 43597333
2830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG263200.1

Sequence Viewer

Length: 639 bp
ATGGCTCGGATAAAGCCCCAGGCTCTGTTACTTCAGAGCAAGAAGAAAAAAGGACCGACTCGAATCAGTGTCACTACCATAGTTCTGTGCAATCTAATCATCGCTTTGATCGCCTTGTCCTTGGTCGCCACTTATCGCTATTGGTCCAGAAGGTCACTGGATCATACCGGGTCTGACTTTTCTGCTGCAGAGGAAATGGATGCGTTTTCGAAGAAGGATGATCTTCCCGGTTATGCTATTTTAAACACATCAAAAGGTTTAATCACAGTGGAACTTTACAAGGATGGTTCTCCAGAGGTTGTGGATAGATTTCTTGACTTGTGTCAAAAGGGACACTTCAAAGGGATGCCCTTCAGTCATGTAATCAAACACTATGTAATTAAAGGAGGAGATTCCCAGGGACTTGGAGTGGCTGAAGATTGGATATCAAAAGGGAAGCTTCGTAGTCAACTTGTGACAAGTCCAAAGCATGAAGCTTTTATGCTTGGAACTACGAAGAATAAACTAGAGAACAAAGGATTTGAGCTTGTTATCACGACGGCACCTATACCAGATTTAAATGACAAGCTTATTGTGTTTGGACGTGTCATCAAAGGAGAGGATGTGGTGCAGGTAAATAATTTTGAGCATCTTGAGTAA

Protein Analysis

212

Amino Acids

23.57

Weight (kDa)

9.1

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 81 - 204 3.3e-23 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 601
AccB1I GGYRCC 1 cut(s) 541
AclWI GGATC 1 cut(s) 168
AcuI CTGAAG 3 cut(s) 17, 337, 435
AflIII ACRYGT 1 cut(s) 583
AgsI TTSAA 1 cut(s) 340
AjiI CACGTC 1 cut(s) 584
AjnI CCWGG 2 cut(s) 18, 396
AluBI AGCT 4 cut(s) 439, 476, 526, 568
AluI AGCT 4 cut(s) 439, 476, 526, 568
AlwI GGATC 1 cut(s) 168
AlwNI CAGNNNCTG 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 185
AspS9I GGNCC 2 cut(s) 53, 144
AsuC2I CCSGG 2 cut(s) 169, 228
AsuII TTCGAA 1 cut(s) 209
AvaII GGWCC 2 cut(s) 53, 144
BanI GGYRCC 1 cut(s) 541
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 555
BciT130I CCWGG 2 cut(s) 20, 398
BcnI CCSGG 2 cut(s) 169, 228
BfaI CTAG 1 cut(s) 506
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 601
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 4 cut(s) 20, 169, 228, 398
Bme18I GGWCC 2 cut(s) 53, 144
BmgBI CACGTC 1 cut(s) 584
BmgT120I GGNCC 2 cut(s) 53, 144
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 4 cut(s) 20, 169, 228, 398
BmsI GCATC 2 cut(s) 190, 336
BoxI GACNNNNGTC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 169, 228
BsaJI CCNNGG 4 cut(s) 18, 120, 396, 397
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 20, 398
BseDI CCNNGG 4 cut(s) 18, 120, 396, 397
BseGI GGATG 5 cut(s) 205, 223, 289, 351, 607
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 629
BshNI GGYRCC 1 cut(s) 541
BsiSI CCGG 2 cut(s) 168, 228
BslFI GGGAC 2 cut(s) 345, 414
BsmFI GGGAC 2 cut(s) 345, 414
Bsp119I TTCGAA 1 cut(s) 209
Bsp143I GATC 3 cut(s) 108, 160, 220
BspLI GGNNCC 1 cut(s) 543
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 541
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 4 cut(s) 18, 120, 396, 397
BssMI GATC 3 cut(s) 108, 160, 220
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 20, 398
Bst4CI ACNGT 1 cut(s) 268
BstBI TTCGAA 1 cut(s) 209
BstF5I GGATG 5 cut(s) 205, 223, 289, 351, 607
BstKTI GATC 3 cut(s) 111, 163, 223
BstMBI GATC 3 cut(s) 108, 160, 220
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 20, 398
BstPAI GACNNNNGTC 1 cut(s) 321
BstSCI CCNGG 4 cut(s) 18, 167, 226, 396
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 404
BtgZI GCGATG 1 cut(s) 85
BtrI CACGTC 1 cut(s) 584
BtsCI GGATG 5 cut(s) 205, 223, 289, 351, 607
BtsIMutI CAGTG 3 cut(s) 73, 155, 273
BveI ACCTGC 1 cut(s) 601
CaiI CAGNNNCTG 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 53, 144
CviAII CATG 2 cut(s) 359, 470
CviJI RGCY 8 cut(s) 5, 16, 23, 413, 439, 476, 526, 568
CviKI_1 RGCY 8 cut(s) 5, 16, 23, 413, 439, 476, 526, 568
DpnI GATC 3 cut(s) 110, 162, 222
DpnII GATC 3 cut(s) 108, 160, 220
DraI TTTAAA 2 cut(s) 243, 558
Eco130I CCWWGG 1 cut(s) 120
Eco32I GATATC 1 cut(s) 426
Eco47I GGWCC 2 cut(s) 53, 144
Eco57I CTGAAG 3 cut(s) 17, 337, 435
EcoRII CCWGG 2 cut(s) 18, 396
EcoRV GATATC 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 362, 473
FaiI YATR 8 cut(s) 80, 165, 234, 360, 375, 471, 482, 548
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 423, 455
FaqI GGGAC 2 cut(s) 345, 414
FatI CATG 2 cut(s) 358, 469
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 5 cut(s) 212, 230, 296, 358, 614
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 506
GluI GCNGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 276
HapII CCGG 2 cut(s) 168, 228
Hin1II CATG 2 cut(s) 362, 473
HincII GTYRAC 1 cut(s) 449
HindII GTYRAC 1 cut(s) 449
HindIII AAGCTT 3 cut(s) 437, 474, 566
HinfI GANTC 3 cut(s) 58, 63, 392
HpaII CCGG 2 cut(s) 168, 228
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 3 cut(s) 9, 36, 175
Hpy188III TCNNGA 5 cut(s) 147, 293, 314, 535, 632
Hpy8I GTNNAC 1 cut(s) 449
Hpy99I CGWCG 1 cut(s) 541
HpyAV CCTTC 3 cut(s) 144, 208, 361
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 583
HpyCH4V TGCA 3 cut(s) 90, 188, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 583
Hsp92II CATG 2 cut(s) 362, 473
Kzo9I GATC 3 cut(s) 108, 160, 220
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 190, 336
MaeI CTAG 1 cut(s) 506
MaeII ACGT 1 cut(s) 583
MaeIII GTNAC 4 cut(s) 27, 70, 153, 454
MalI GATC 3 cut(s) 110, 162, 222
MboI GATC 3 cut(s) 108, 160, 220
MboII GAAGA 5 cut(s) 55, 215, 223, 428, 508
MluCI AATT 2 cut(s) 378, 619
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 4 cut(s) 184, 289, 380, 592
MseI TTAA 4 cut(s) 242, 260, 381, 557
MspI CCGG 2 cut(s) 168, 228
MspR9I CCNGG 4 cut(s) 20, 169, 228, 398
MvaI CCWGG 2 cut(s) 20, 398
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 2 cut(s) 169, 228
NdeII GATC 3 cut(s) 108, 160, 220
NlaIII CATG 2 cut(s) 362, 473
NlaIV GGNNCC 1 cut(s) 543
NmuCI GTSAC 3 cut(s) 70, 153, 454
NspV TTCGAA 1 cut(s) 209
PasI CCCWGGG 1 cut(s) 397
PfeI GAWTC 2 cut(s) 63, 392
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PshAI GACNNNNGTC 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 18, 396
PspGI CCWGG 2 cut(s) 18, 396
PspN4I GGNNCC 1 cut(s) 543
PspPI GGNCC 2 cut(s) 53, 144
PstI CTGCAG 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 25
SaqAI TTAA 4 cut(s) 242, 260, 381, 557
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 3 cut(s) 108, 160, 220
Sau96I GGNCC 2 cut(s) 53, 144
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 4 cut(s) 20, 169, 228, 398
SfaNI GCATC 2 cut(s) 190, 336
SfcI CTRYAG 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 209
SinI GGWCC 2 cut(s) 53, 144
SmiI ATTTAAAT 1 cut(s) 558
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 2 cut(s) 378, 619
SspMI CTAG 1 cut(s) 506
StyD4I CCNGG 4 cut(s) 18, 167, 226, 396
StyI CCWWGG 1 cut(s) 120
SwaI ATTTAAAT 1 cut(s) 558
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 586
TaqI TCGA 2 cut(s) 61, 209
TaqII GACCGA 1 cut(s) 70
TasI AATT 2 cut(s) 378, 619
TfiI GAWTC 2 cut(s) 63, 392
Tru1I TTAA 4 cut(s) 242, 260, 381, 557
Tru9I TTAA 4 cut(s) 242, 260, 381, 557
TscAI CASTG 3 cut(s) 73, 162, 273
TseFI GTSAC 3 cut(s) 70, 153, 454
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 3 cut(s) 70, 153, 454
TspDTI ATGAA 1 cut(s) 486
TspRI CASTG 3 cut(s) 73, 162, 273
VpaK11BI GGWCC 2 cut(s) 53, 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.