Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003111

Physical Location & Seq

Genomic Coordinates Forward (+)

2087916 .. 2090541

Gene Structure 2626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G66654.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGAAGATAAAACCGCAGGCTCTTCTAAATCAAAGCAAGAAGAAGAAGGGTCCAAGTCGCATAAGTATTTCCACTATTATTGTCTGTAATCTTGTAGTTGCTGTAGTCATATTATCGTTGGTCACAACCTATCGCCATTGGTCCCAAAGGTCAAGAAACACAATTGAACATGAAACTCGGAGTCAGAGATTTGAGGACACTAATACTGCGTCAGGGCAAAAAACTTACGATCTTCCTGGTTTTGCTGATATAAACACATCAAAAGGACTTATAACTGTCGAACTCTTCAAAGAAGGTTCCCCTGAAGTTGTGGACAAGTTTCTAGATCTATGTCAAAAAGATCACTTCAAGGGAATGCCGTTTCAGCGGGTTATAAAGAACTACTTGGTACAAGCTGGTCACTCACCGAGCTCTATACCTGTAGAAGAATGGACAGCTAAAGGAAAGCTCAGAGGTCGCCTTCACATTGGCCCAAAACATGAGGCATTCATGTTGGGAACACCAAAAAACAAAGGGAACAACAAGGATTTTGAGCTTCTGATCACAACGGCCCCAATCCCGGATCTGAATGATCAACTTATAGTGTTTGGAAGAGTCCTTAAGGGAGAGGATGTAGTACAGGAGATCGAAGAAGTGGATACGGATGAGCATTTCCAACCGAAATCGCCAATAGGGATCACTGGTGTTGTACTGAAACTAGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

236

Amino Acids

26.43

Weight (kDa)

8.95

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	83 - 230	6.7e-28	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47320 AT3G66654 AT3G66654 AT3G66654 AT3G66654 AT3G66654
fragaria_vesca	FvH4_4g19620 FvH4_4g19630
malus_domestica	MD13G1155100.v1.1 MD13G1155200.v1.1 MD16G1154600.v1.1 MD16G1154700.v1.1
prunus_persica	Prupe.1G118100_v2.0.a1 Prupe.1G118100_v2.0.a1 Prupe.1G118200_v2.0.a1
pyrus_communis	pycom13g13190 pycom13g13200 pycom16g13100 pycom16g13110
rosa_chinensis	RchiOBHm_Chr4g0424881 RchiOBHm_Chr4g0424891
rosa_laevigata	RLG00000007412
rosa_multiflora	Rmu_co8066912.1_g000001 Rmu_sc0006754.1_g000003 Rmu_sc0033998.1_g000001
rosa_rugosa	Rorug04G0200300 Rorug04G0200400
rosa_samantha	Rh4AG257700 Rh4AG257800 Rh4BG263100 Rh4BG263200 Rh4CG274100 Rh4CG274200 Rh4DG258800 Rh4DG258900
rosa_wichuraiana	Rw4G022240 Rw4G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	275, 377
AciI	CCGC	2 cut(s)	17, 370
AclWI	GGATC	2 cut(s)	573, 686
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	3 cut(s)	393, 621, 693
AfiI	CCNNNNNNNGG	1 cut(s)	562
AflII	CTTAAG	1 cut(s)	602
AgsI	TTSAA	3 cut(s)	170, 292, 352
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	5 cut(s)	398, 414, 440, 451, 538
AluI	AGCT	5 cut(s)	398, 414, 440, 451, 538
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	698
AlwI	GGATC	2 cut(s)	573, 686
AoxI	GGCC	2 cut(s)	472, 552
AspS9I	GGNCC	4 cut(s)	53, 144, 473, 553
AsuC2I	CCSGG	1 cut(s)	563
AsuHPI	GGTGA	1 cut(s)	399
AvaII	GGWCC	2 cut(s)	53, 144
BanII	GRGCYC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	416
BceAI	ACGGC	2 cut(s)	346, 567
BciT130I	CCWGG	1 cut(s)	240
BciVI	GTATCC	1 cut(s)	634
BclI	TGATCA	2 cut(s)	543, 574
BcnI	CCSGG	1 cut(s)	563
BcoDI	GTCTC	1 cut(s)	698
BfaI	CTAG	2 cut(s)	326, 701
BfmI	CTRYAG	2 cut(s)	105, 423
BfrI	CTTAAG	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	634
BglII	AGATCT	1 cut(s)	328
Bme1390I	CCNGG	2 cut(s)	240, 563
Bme18I	GGWCC	2 cut(s)	53, 144
BmgT120I	GGNCC	4 cut(s)	53, 144, 473, 553
BmiI	GGNNCC	4 cut(s)	54, 146, 301, 555
BmrFI	CCNGG	2 cut(s)	240, 563
BpuMI	CCSGG	1 cut(s)	563
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse1I	ACTGG	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	619, 652
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	466
BseNI	ACTGG	1 cut(s)	688
BshFI	GGCC	2 cut(s)	474, 554
BsiHKAI	GWGCWC	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	1 cut(s)	698
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	2 cut(s)	363, 488
BsnI	GGCC	2 cut(s)	474, 554
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	8 cut(s)	232, 328, 343, 543, 565, 574, 627, 678
BspACI	CCGC	2 cut(s)	17, 370
BspANI	GGCC	2 cut(s)	474, 554
BspCNI	CTCAG	1 cut(s)	465
BspLI	GGNNCC	4 cut(s)	54, 146, 301, 555
BspPI	GGATC	2 cut(s)	573, 686
BspQI	GCTCTTC	1 cut(s)	30
BspTI	CTTAAG	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	688
BssMI	GATC	8 cut(s)	232, 328, 343, 543, 565, 574, 627, 678
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	3 cut(s)	30, 293, 589
BstAFI	CTTAAG	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	619, 652
BstKTI	GATC	8 cut(s)	235, 331, 346, 546, 568, 577, 630, 681
BstMAI	GTCTC	1 cut(s)	698
BstMBI	GATC	8 cut(s)	232, 328, 343, 543, 565, 574, 627, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	238, 561
BstSFI	CTRYAG	2 cut(s)	105, 423
BstX2I	RGATCY	2 cut(s)	328, 565
BstYI	RGATCY	2 cut(s)	328, 565
BsuI	GTATCC	1 cut(s)	634
BsuRI	GGCC	2 cut(s)	474, 554
BtsCI	GGATG	2 cut(s)	619, 652
BtsIMutI	CAGTG	1 cut(s)	681
Cac8I	GCNNGC	1 cut(s)	21
Cfr13I	GGNCC	4 cut(s)	53, 144, 473, 553
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	3 cut(s)	392, 620, 692
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	4 cut(s)	173, 482, 493, 708
CviJI	RGCY	8 cut(s)	23, 398, 414, 440, 451, 474, 538, 554
CviKI_1	RGCY	8 cut(s)	23, 398, 414, 440, 451, 474, 538, 554
CviQI	GTAC	3 cut(s)	392, 620, 692
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	8 cut(s)	234, 330, 345, 545, 567, 576, 629, 680
DpnII	GATC	8 cut(s)	232, 328, 343, 543, 565, 574, 627, 678
Eam1104I	CTCTTC	3 cut(s)	30, 293, 589
EarI	CTCTTC	3 cut(s)	30, 293, 589
Ecl136II	GAGCTC	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	416
Eco47I	GGWCC	2 cut(s)	53, 144
Eco53kI	GAGCTC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	416
FaeI	CATG	4 cut(s)	176, 485, 496, 711
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	4 cut(s)	172, 481, 492, 707
FauI	CCCGC	1 cut(s)	363
FbaI	TGATCA	2 cut(s)	543, 574
FokI	GGATG	2 cut(s)	626, 659
FriOI	GRGCYC	1 cut(s)	416
FspBI	CTAG	2 cut(s)	326, 701
HaeIII	GGCC	2 cut(s)	474, 554
HapII	CCGG	1 cut(s)	563
HgaI	GACGC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	176, 485, 496, 711
HinfI	GANTC	2 cut(s)	184, 597
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	1 cut(s)	399
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	5 cut(s)	183, 189, 455, 543, 570
Hpy188III	TCNNGA	2 cut(s)	156, 326
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	3 cut(s)	43, 290, 473
HpyCH4III	ACNGT	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	1 cut(s)	452
Hsp92II	CATG	4 cut(s)	176, 485, 496, 711
Ksp22I	TGATCA	2 cut(s)	543, 574
Kzo9I	GATC	8 cut(s)	232, 328, 343, 543, 565, 574, 627, 678
LguI	GCTCTTC	1 cut(s)	30
MaeI	CTAG	2 cut(s)	326, 701
MaeIII	GTNAC	2 cut(s)	124, 401
MalI	GATC	8 cut(s)	234, 330, 345, 545, 567, 576, 629, 680
MboI	GATC	8 cut(s)	232, 328, 343, 543, 565, 574, 627, 678
MboII	GAAGA	9 cut(s)	17, 19, 55, 58, 227, 280, 440, 606, 644
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	2 cut(s)	328, 565
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	1 cut(s)	165
MlyI	GAGTC	2 cut(s)	193, 606
MmeI	TCCRAC	1 cut(s)	682
MnlI	CCTC	4 cut(s)	190, 449, 478, 604
MseI	TTAA	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	370
MspCI	CTTAAG	1 cut(s)	602
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	2 cut(s)	240, 563
MunI	CAATTG	1 cut(s)	165
Mva1269I	GAATGC	2 cut(s)	363, 488
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	367
NciI	CCSGG	1 cut(s)	563
NdeII	GATC	8 cut(s)	232, 328, 343, 543, 565, 574, 627, 678
NlaIII	CATG	4 cut(s)	176, 485, 496, 711
NlaIV	GGNNCC	4 cut(s)	54, 146, 301, 555
NmuCI	GTSAC	2 cut(s)	124, 401
PciSI	GCTCTTC	1 cut(s)	30
PctI	GAATGC	2 cut(s)	363, 488
PfoI	TCCNGGA	1 cut(s)	561
PleI	GAGTC	2 cut(s)	192, 605
PpsI	GAGTC	2 cut(s)	192, 605
PsiI	TTATAA	2 cut(s)	275, 377
Psp124BI	GAGCTC	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	4 cut(s)	54, 146, 301, 555
PspPI	GGNCC	4 cut(s)	53, 144, 473, 553
PsuI	RGATCY	2 cut(s)	328, 565
RsaI	GTAC	3 cut(s)	393, 621, 693
RsaNI	GTAC	3 cut(s)	392, 620, 692
SacI	GAGCTC	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	603
Sau3AI	GATC	8 cut(s)	232, 328, 343, 543, 565, 574, 627, 678
Sau96I	GGNCC	4 cut(s)	53, 144, 473, 553
SchI	GAGTC	2 cut(s)	193, 606
ScrFI	CCNGG	2 cut(s)	240, 563
SduI	GDGCHC	1 cut(s)	416
SfcI	CTRYAG	2 cut(s)	105, 423
SinI	GGWCC	2 cut(s)	53, 144
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	1 cut(s)	165
SsiI	CCGC	2 cut(s)	17, 370
SspMI	CTAG	2 cut(s)	326, 701
SstI	GAGCTC	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	238, 561
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	2 cut(s)	282, 630
TasI	AATT	1 cut(s)	165
TatI	WGTACW	2 cut(s)	619, 691
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	2 cut(s)	124, 401
Tsp45I	GTSAC	2 cut(s)	124, 401
TspDTI	ATGAA	2 cut(s)	189, 481
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	1 cut(s)	688
Vha464I	CTTAAG	1 cut(s)	602
VpaK11BI	GGWCC	2 cut(s)	53, 144
XbaI	TCTAGA	1 cut(s)	325
XspI	CTAG	2 cut(s)	326, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.