Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033998.1

Orthogroup ID

OG0003111

Physical Location & Seq

Genomic Coordinates Reverse (-)

1663 .. 2553

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033998.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgattcatgctattcgtggtttgaatgttgatgataatggatttgaaattgctatggattctgatttggagagaaagagctcggtcaaggacgagtctgtggactttgttttcgcatttgatttgggtgattctaaatttgtggatcgcgtcttgaaagttggtggcattgttgctgttcctctaagcaatgacccttcagatgcttttagcaaaaaatcgaattacaagattgtgtatcttcgccgatacgcttcaatttttgtggcgatgaggaagaccggtccggctggtgagctgcaggagaatcctggccgccggcggctttgccaatttggaagtggggccaaggagaccgtcctgcagggtcttgaagatgtgttgcttgagccaccaagacgtgctttggcaaaatcaagccagtacttgaagaagatgaagttcctccctgacctgttggggaattctcttgaaaattacgagcgccgtgtgtttgttaatgtggacttgaatgagaaaaaaggtggcgcaattgaatggtttcatcaaaactatccgaaaatgaatacggattttgaagtacacaaccttgaaatagaagaacaacaagacgaagaagcttcaagcaagccgcagactgatgtttcaggttggctaaaggagaatgtgaaggaagaggactatgttgtgatgaaagcagaagcagaagttgttgtggatatgatgcagaagagcacaatctgtctggtggatgagttgtttttggagtgtaacaatgaatggtggcagaatggaaagagtgacaagagcaagagagcttattgggagtgcgttgctctacatggaaggctaagggatctaggagttgctgtgcaccagtggtttctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

33.87

Weight (kDa)

5.27

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47320 AT3G66654 AT3G66654 AT3G66654 AT3G66654 AT3G66654
fragaria_vesca	FvH4_4g19620 FvH4_4g19630
malus_domestica	MD13G1155100.v1.1 MD13G1155200.v1.1 MD16G1154600.v1.1 MD16G1154700.v1.1
prunus_persica	Prupe.1G118100_v2.0.a1 Prupe.1G118100_v2.0.a1 Prupe.1G118200_v2.0.a1
pyrus_communis	pycom13g13190 pycom13g13200 pycom16g13100 pycom16g13110
rosa_chinensis	RchiOBHm_Chr4g0424881 RchiOBHm_Chr4g0424891
rosa_laevigata	RLG00000007412
rosa_multiflora	Rmu_co8066912.1_g000001 Rmu_sc0006754.1_g000003 Rmu_sc0033998.1_g000001
rosa_rugosa	Rorug04G0200300 Rorug04G0200400
rosa_samantha	Rh4AG257700 Rh4AG257800 Rh4BG263100 Rh4BG263200 Rh4CG274100 Rh4CG274200 Rh4DG258800 Rh4DG258900
rosa_wichuraiana	Rw4G022240 Rw4G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	150
AciI	CCGC	3 cut(s)	316, 322, 632
AclWI	GGATC	2 cut(s)	153, 864
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	137, 463
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	2 cut(s)	425, 582
AgeI	ACCGGT	1 cut(s)	281
AjiI	CACGTC	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	4 cut(s)	81, 298, 620, 818
AluI	AGCT	4 cut(s)	81, 298, 620, 818
Alw21I	GWGCWC	3 cut(s)	83, 737, 876
Alw26I	GTCTC	1 cut(s)	347
Alw44I	GTGCAC	1 cut(s)	872
AlwI	GGATC	2 cut(s)	153, 864
AoxI	GGCC	2 cut(s)	313, 345
ApaLI	GTGCAC	1 cut(s)	872
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	2 cut(s)	137, 463
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AsiGI	ACCGGT	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	2 cut(s)	486, 530
AspS9I	GGNCC	2 cut(s)	284, 345
AsuHPI	GGTGA	2 cut(s)	140, 305
AvaII	GGWCC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	876
BanII	GRGCYC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	3 cut(s)	83, 737, 876
BbvI	GCAGC	1 cut(s)	285
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	860
BfmI	CTRYAG	2 cut(s)	299, 362
BfoI	RGCGCY	1 cut(s)	487
BisI	GCNGC	4 cut(s)	299, 316, 323, 632
BlsI	GCNGC	4 cut(s)	300, 317, 324, 633
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	284
BmgBI	CACGTC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	284, 345
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	2 cut(s)	193, 714
BpiI	GAAGAC	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	851
BpuEI	CTTGAG	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	855, 885
Bse118I	RCCGGY	2 cut(s)	281, 318
Bse1I	ACTGG	2 cut(s)	421, 877
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	757
BseMI	GCAATG	1 cut(s)	196
BseNI	ACTGG	2 cut(s)	421, 877
BseSI	GKGCMC	1 cut(s)	876
BseXI	GCAGC	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	315, 347
BshTI	ACCGGT	1 cut(s)	281
BsiHKAI	GWGCWC	3 cut(s)	83, 737, 876
BsiSI	CCGG	3 cut(s)	282, 287, 319
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	315, 347
Bso31I	GGTCTC	1 cut(s)	347
Bsp1286I	GDGCHC	3 cut(s)	83, 737, 876
Bsp143I	GATC	2 cut(s)	145, 856
BspACI	CCGC	3 cut(s)	316, 322, 632
BspANI	GGCC	2 cut(s)	315, 347
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	346
BspMAI	CTGCAG	2 cut(s)	303, 366
BspPI	GGATC	2 cut(s)	153, 864
BspQI	GCTCTTC	1 cut(s)	725
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	196
BsrFI	RCCGGY	2 cut(s)	281, 318
BsrI	ACTGG	2 cut(s)	421, 877
BssAI	RCCGGY	2 cut(s)	281, 318
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	2 cut(s)	145, 856
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	669, 725
BstC8I	GCNNGC	2 cut(s)	320, 629
BstDEI	CTNAG	2 cut(s)	185, 851
BstF5I	GGATG	1 cut(s)	757
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	2 cut(s)	486, 530
BstKTI	GATC	2 cut(s)	148, 859
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	2 cut(s)	145, 856
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	2 cut(s)	299, 362
BstSLI	GKGCMC	1 cut(s)	876
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
BsuRI	GGCC	2 cut(s)	315, 347
BtgZI	GCGATG	1 cut(s)	284
BtrI	CACGTC	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	757
BtsIMutI	CAGTG	1 cut(s)	884
Cac8I	GCNNGC	2 cut(s)	320, 629
CfoI	GCGC	2 cut(s)	486, 530
Cfr10I	RCCGGY	2 cut(s)	281, 318
Cfr13I	GGNCC	2 cut(s)	284, 345
CpoI	CGGWCCG	1 cut(s)	284
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	424, 581
CspAI	ACCGGT	1 cut(s)	281
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CspI	CGGWCCG	1 cut(s)	284
CviAII	CATG	2 cut(s)	8, 842
CviQI	GTAC	2 cut(s)	424, 581
DdeI	CTNAG	2 cut(s)	185, 851
DpnI	GATC	2 cut(s)	147, 858
DpnII	GATC	2 cut(s)	145, 856
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	669, 725
EarI	CTCTTC	2 cut(s)	669, 725
Ecl136II	GAGCTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	2 cut(s)	11, 845
FaiI	YATR	6 cut(s)	9, 56, 684, 722, 843, 889
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FatI	CATG	2 cut(s)	7, 841
Fnu4HI	GCNGC	4 cut(s)	299, 316, 323, 632
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	4 cut(s)	299, 316, 323, 632
FspBI	CTAG	1 cut(s)	860
GlaI	GCGC	2 cut(s)	485, 529
GluI	GCNGC	4 cut(s)	299, 316, 323, 632
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	2 cut(s)	315, 347
HapII	CCGG	3 cut(s)	282, 287, 319
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	2 cut(s)	486, 530
Hin1II	CATG	2 cut(s)	11, 845
Hin6I	GCGC	2 cut(s)	484, 528
HinP1I	GCGC	2 cut(s)	484, 528
HindIII	AAGCTT	1 cut(s)	618
HinfI	GANTC	5 cut(s)	4, 59, 95, 131, 307
HpaII	CCGG	3 cut(s)	282, 287, 319
HphI	GGTGA	2 cut(s)	140, 305
Hpy166II	GTNNAC	4 cut(s)	103, 505, 583, 874
Hpy188I	TCNGA	3 cut(s)	64, 202, 558
Hpy188III	TCNNGA	3 cut(s)	154, 371, 470
Hpy8I	GTNNAC	4 cut(s)	103, 505, 583, 874
HpyAV	CCTTC	3 cut(s)	207, 664, 840
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	4 cut(s)	301, 364, 727, 874
HpyF3I	CTNAG	2 cut(s)	185, 851
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	2 cut(s)	11, 845
HspAI	GCGC	2 cut(s)	484, 528
KroI	GCCGGC	1 cut(s)	318
KroNI	GCCGGC	1 cut(s)	320
Kzo9I	GATC	2 cut(s)	145, 856
LguI	GCTCTTC	1 cut(s)	725
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	2 cut(s)	193, 714
MaeI	CTAG	1 cut(s)	860
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	2 cut(s)	770, 800
MalI	GATC	2 cut(s)	147, 858
MboI	GATC	2 cut(s)	145, 856
MboII	GAAGA	9 cut(s)	233, 289, 386, 442, 445, 611, 626, 686, 742
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	3 cut(s)	83, 737, 876
MluCI	AATT	8 cut(s)	48, 137, 223, 258, 332, 463, 475, 531
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	4 cut(s)	192, 267, 455, 670
MreI	CGCCGGCG	1 cut(s)	318
MroNI	GCCGGC	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	1 cut(s)	498
MspI	CCGG	3 cut(s)	282, 287, 319
MspR9I	CCNGG	1 cut(s)	312
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	150
NaeI	GCCGGC	1 cut(s)	320
NdeII	GATC	2 cut(s)	145, 856
NgoMIV	GCCGGC	1 cut(s)	318
NlaIII	CATG	2 cut(s)	11, 845
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	800
PciSI	GCTCTTC	1 cut(s)	725
PdiI	GCCGGC	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	4 cut(s)	4, 59, 131, 307
PinAI	ACCGGT	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	300, 317, 324, 633
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp124BI	GAGCTC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	2 cut(s)	284, 345
PstI	CTGCAG	2 cut(s)	303, 366
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	2 cut(s)	425, 582
RsaNI	GTAC	2 cut(s)	424, 581
Rsr2I	CGGWCCG	1 cut(s)	284
RsrII	CGGWCCG	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	725
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	4 cut(s)	299, 316, 323, 632
Sau3AI	GATC	2 cut(s)	145, 856
Sau96I	GGNCC	2 cut(s)	284, 345
SbfI	CCTGCAGG	1 cut(s)	366
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	312
SdaI	CCTGCAGG	1 cut(s)	366
SduI	GDGCHC	3 cut(s)	83, 737, 876
SetI	ASST	9 cut(s)	83, 300, 403, 456, 526, 591, 622, 652, 820
SfaNI	GCATC	2 cut(s)	193, 714
SfcI	CTRYAG	2 cut(s)	299, 362
SgrAI	CRCCGGYG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse8387I	CCTGCAGG	1 cut(s)	366
Sse9I	AATT	8 cut(s)	48, 137, 223, 258, 332, 463, 475, 531
SsiI	CCGC	3 cut(s)	316, 322, 632
SspMI	CTAG	1 cut(s)	860
SstI	GAGCTC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	1 cut(s)	221
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	8 cut(s)	48, 137, 223, 258, 332, 463, 475, 531
TatI	WGTACW	2 cut(s)	423, 580
TauI	GCSGC	3 cut(s)	318, 325, 634
TfiI	GAWTC	4 cut(s)	4, 59, 131, 307
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	884
TseFI	GTSAC	1 cut(s)	800
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	800
TspDTI	ATGAA	5 cut(s)	452, 533, 578, 707, 792
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	1 cut(s)	884
VneI	GTGCAC	1 cut(s)	872
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	2 cut(s)	137, 463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	1 cut(s)	860
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.