Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003111

Physical Location & Seq

Genomic Coordinates Reverse (-)

9335590 .. 9337640

Gene Structure 2051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCGCGGATAAAGCCCCAGGCGCTGTTAATTCAGAGCAAGAAGAAGAAGGGGCCGACTCGGATCAGTACCACTACCATAGTTATGTGCAATTTAATCATCGCTCTGGTCGCCCTGTCGTTGATCGCTACTTATCGCTATTGGTCCAGAAGGTCGCTGGACCAATCTGGGTCGGAGTTATCTAATCAAGAGAAATTTGATGGGATTGGAAAGAAGGACGATCTTCCGGGTTATGCTATTCTAAATACATCAAAGGGTCCTATCACTGTGGAACTTTTCAAGGATGCTTCTCCAGAGGTTGTGGATAGATTTATTGACTTATGTCAAAAGGGACGCTTCAAGGGGATGCCCTTCAGTCATGTGATCGATCACTATATAATCAAAGGGGGTGGTTCCCAAGAACTTGGAGCAGCTGAAGATTGGATATCAAAAGGGAAACTTCGTAGTCAACTTGTTACGAGTCCAAAGCACGAAGCTTTTATGCTTGGAACTACGAAGGCTAGACCAGACAACAAAGGATTTGAGCTTGTTATCACAACTGCACCAATACCAGATTTAAATGATAAGCTAATTGTCTTCGGACGGGTCATCAAAGGAGAGGAAGTGGTACAGGAAATTGAGGAGGTCGATACAGATGAACATTATCGGCCTAAATCATCTGTAGGGATCACTGGCGTGATTCTGAAACAGGATCGATCTAAGGGCGACCCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

239

Amino Acids

26.35

Weight (kDa)

9.07

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47320 AT3G66654 AT3G66654 AT3G66654 AT3G66654 AT3G66654
fragaria_vesca	FvH4_4g19620 FvH4_4g19630
malus_domestica	MD13G1155100.v1.1 MD13G1155200.v1.1 MD16G1154600.v1.1 MD16G1154700.v1.1
prunus_persica	Prupe.1G118100_v2.0.a1 Prupe.1G118100_v2.0.a1 Prupe.1G118200_v2.0.a1
pyrus_communis	pycom13g13190 pycom13g13200 pycom16g13100 pycom16g13110
rosa_chinensis	RchiOBHm_Chr4g0424881 RchiOBHm_Chr4g0424891
rosa_laevigata	RLG00000007412
rosa_multiflora	Rmu_co8066912.1_g000001 Rmu_sc0006754.1_g000003 Rmu_sc0033998.1_g000001
rosa_rugosa	Rorug04G0200300 Rorug04G0200400
rosa_samantha	Rh4AG257700 Rh4AG257800 Rh4BG263100 Rh4BG263200 Rh4CG274100 Rh4CG274200 Rh4DG258800 Rh4DG258900
rosa_wichuraiana	Rw4G022240 Rw4G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	3 cut(s)	71, 674, 699
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	2 cut(s)	337, 435
AfaI	GTAC	2 cut(s)	70, 609
AgsI	TTSAA	2 cut(s)	280, 340
AjnI	CCWGG	1 cut(s)	18
AleI	CACNNNNGTG	1 cut(s)	674
AluBI	AGCT	4 cut(s)	413, 476, 526, 568
AluI	AGCT	4 cut(s)	413, 476, 526, 568
AlwI	GGATC	3 cut(s)	71, 674, 699
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	53, 647
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	2 cut(s)	7, 25
AspS9I	GGNCC	4 cut(s)	53, 144, 160, 257
AsuC2I	CCSGG	1 cut(s)	228
AvaII	GGWCC	3 cut(s)	144, 160, 257
BbsI	GAAGAC	1 cut(s)	568
BbvI	GCAGC	1 cut(s)	422
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	228
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
Bme1390I	CCNGG	2 cut(s)	20, 228
Bme18I	GGWCC	3 cut(s)	144, 160, 257
BmgT120I	GGNCC	4 cut(s)	53, 144, 160, 257
BmiI	GGNNCC	3 cut(s)	54, 258, 394
BmrFI	CCNGG	2 cut(s)	20, 228
BmsI	GCATC	2 cut(s)	274, 336
BoxI	GACNNNNGTC	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	228
Bsa29I	ATCGAT	2 cut(s)	366, 694
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bse1I	ACTGG	1 cut(s)	676
BseBI	CCWGG	1 cut(s)	20
BseCI	ATCGAT	2 cut(s)	366, 694
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	289, 351
BseNI	ACTGG	1 cut(s)	676
BseRI	GAGGAG	1 cut(s)	635
BseXI	GCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	55, 649
BshVI	ATCGAT	2 cut(s)	366, 694
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	55, 649
Bsp143I	GATC	8 cut(s)	63, 123, 220, 363, 367, 666, 691, 695
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	2 cut(s)	55, 649
BspDI	ATCGAT	2 cut(s)	366, 694
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	54, 258, 394
BspPI	GGATC	3 cut(s)	71, 674, 699
BsrI	ACTGG	1 cut(s)	676
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	8 cut(s)	63, 123, 220, 363, 367, 666, 691, 695
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	699
BstF5I	GGATG	2 cut(s)	289, 351
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	7, 25
BstKTI	GATC	8 cut(s)	66, 126, 223, 366, 370, 669, 694, 698
BstMBI	GATC	8 cut(s)	63, 123, 220, 363, 367, 666, 691, 695
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 22, 110
BstNI	CCWGG	1 cut(s)	20
BstPAI	GACNNNNGTC	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	18, 226
BstSFI	CTRYAG	1 cut(s)	660
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	422
BstV2I	GAAGAC	1 cut(s)	568
BstXI	CCANNNNNNTGG	1 cut(s)	404
Bsu15I	ATCGAT	2 cut(s)	366, 694
BsuRI	GGCC	2 cut(s)	55, 649
BsuTUI	ATCGAT	2 cut(s)	366, 694
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	289, 351
BtsIMutI	CAGTG	2 cut(s)	264, 669
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	2 cut(s)	7, 25
Cfr13I	GGNCC	4 cut(s)	53, 144, 160, 257
ClaI	ATCGAT	2 cut(s)	366, 694
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	2 cut(s)	69, 608
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	8 cut(s)	16, 55, 413, 476, 500, 526, 568, 649
CviKI_1	RGCY	8 cut(s)	16, 55, 413, 476, 500, 526, 568, 649
CviQI	GTAC	2 cut(s)	69, 608
DdeI	CTNAG	1 cut(s)	699
DpnI	GATC	8 cut(s)	65, 125, 222, 365, 369, 668, 693, 697
DpnII	GATC	8 cut(s)	63, 123, 220, 363, 367, 666, 691, 695
DraI	TTTAAA	1 cut(s)	558
Eco32I	GATATC	1 cut(s)	426
Eco47I	GGWCC	3 cut(s)	144, 160, 257
Eco57I	CTGAAG	2 cut(s)	337, 435
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	18
EcoRV	GATATC	1 cut(s)	426
FaeI	CATG	1 cut(s)	362
FaiI	YATR	8 cut(s)	80, 86, 234, 322, 360, 375, 377, 482
FalI	AAGNNNNNCTT	4 cut(s)	320, 352, 423, 455
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	2 cut(s)	296, 358
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	2 cut(s)	6, 24
GluI	GCNGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	55, 649
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	342
HhaI	GCGC	2 cut(s)	7, 25
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	2 cut(s)	5, 23
HinP1I	GCGC	2 cut(s)	5, 23
HincII	GTYRAC	1 cut(s)	449
HindII	GTYRAC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	3 cut(s)	58, 460, 679
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	5 cut(s)	36, 63, 175, 581, 684
Hpy188III	TCNNGA	3 cut(s)	147, 188, 293
Hpy8I	GTNNAC	1 cut(s)	449
HpyAV	CCTTC	5 cut(s)	43, 144, 208, 361, 490
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	90, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 22, 110
HpyF3I	CTNAG	1 cut(s)	699
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	2 cut(s)	5, 23
Kzo9I	GATC	8 cut(s)	63, 123, 220, 363, 367, 666, 691, 695
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	1 cut(s)	422
LweI	GCATC	2 cut(s)	274, 336
MaeI	CTAG	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	8 cut(s)	65, 125, 222, 365, 369, 668, 693, 697
MboI	GATC	8 cut(s)	63, 123, 220, 363, 367, 666, 691, 695
MboII	GAAGA	5 cut(s)	55, 58, 215, 428, 568
MluCI	AATT	5 cut(s)	30, 91, 194, 570, 615
MlyI	GAGTC	2 cut(s)	52, 469
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	4 cut(s)	289, 592, 613, 616
MseI	TTAA	3 cut(s)	29, 95, 557
MslI	CAYNNNNRTG	2 cut(s)	83, 674
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	20, 228
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	13, 22, 110
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	8 cut(s)	63, 123, 220, 363, 367, 666, 691, 695
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	3 cut(s)	54, 258, 394
OliI	CACNNNNGTG	1 cut(s)	674
PfeI	GAWTC	1 cut(s)	679
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	2 cut(s)	52, 468
PpsI	GAGTC	2 cut(s)	52, 468
PpuMI	RGGWCCY	1 cut(s)	257
PshAI	GACNNNNGTC	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	54, 258, 394
PspPI	GGNCC	4 cut(s)	53, 144, 160, 257
PspPPI	RGGWCCY	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	70, 609
RsaNI	GTAC	2 cut(s)	69, 608
RseI	CAYNNNNRTG	2 cut(s)	83, 674
SaqAI	TTAA	3 cut(s)	29, 95, 557
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	8 cut(s)	63, 123, 220, 363, 367, 666, 691, 695
Sau96I	GGNCC	4 cut(s)	53, 144, 160, 257
SchI	GAGTC	2 cut(s)	52, 469
ScrFI	CCNGG	2 cut(s)	20, 228
SetI	ASST	7 cut(s)	155, 300, 415, 478, 528, 570, 627
SfaNI	GCATC	2 cut(s)	274, 336
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	3 cut(s)	144, 160, 257
SmiI	ATTTAAAT	1 cut(s)	558
SmiMI	CAYNNNNRTG	2 cut(s)	83, 674
Sse9I	AATT	5 cut(s)	30, 91, 194, 570, 615
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	18, 226
SwaI	ATTTAAAT	1 cut(s)	558
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	3 cut(s)	366, 627, 694
TasI	AATT	5 cut(s)	30, 91, 194, 570, 615
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	3 cut(s)	29, 95, 557
Tru9I	TTAA	3 cut(s)	29, 95, 557
TscAI	CASTG	2 cut(s)	271, 676
TseI	GCWGC	1 cut(s)	410
TspDTI	ATGAA	1 cut(s)	651
TspRI	CASTG	2 cut(s)	271, 676
VpaK11BI	GGWCC	3 cut(s)	144, 160, 257
XapI	RAATTY	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.