Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003111

Physical Location & Seq

Genomic Coordinates Forward (+)

47514928 .. 47516164

Gene Structure 1237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG258900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTTGTTACTTACTTCCTTTCTTTCCCTACCACATTGTTTTCAGATTTTAAACACATCAAAAGGTTTAATCACAGTGGAACTTTACAAGGATGGTTCTCCAGAGGTTGTGGATAGATTTCTTGACTTGTGTCAAAAGGGACACTTCAAAGGGATGCCCTTCAGTCATGTAATCAAACACTATGTAATTAAAGGAGGAGATTCCCAGGGACTTGGAGTGGCTGAAGATTGGATATCAAAAGGGAAGCTTCGTAGTCAACTTGTGACAAGTCCAAAGCATGAAGCTTTTATGCTTGGAACTACGAAGAATAAACTAGAGAACAAAGGATTTGAGCTTGTTATCACGACGGCACCTATACCAGATTTAAATGACAAGCTTATTGTGTTTGGACGTGTCATCAAAGGAGAGGATGTGGTGCAGGAAATTGAAGAGGTTGATACAGATGAACATTATCGGCCTAAATCTCATGTAGGGATCACCAGTGTGACTCTAAAACGTGAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

168

Amino Acids

18.82

Weight (kDa)

6.65

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	17 - 163	4.9e-30	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47320 AT3G66654 AT3G66654 AT3G66654 AT3G66654 AT3G66654
fragaria_vesca	FvH4_4g19620 FvH4_4g19630
malus_domestica	MD13G1155100.v1.1 MD13G1155200.v1.1 MD16G1154600.v1.1 MD16G1154700.v1.1
prunus_persica	Prupe.1G118100_v2.0.a1 Prupe.1G118100_v2.0.a1 Prupe.1G118200_v2.0.a1
pyrus_communis	pycom13g13190 pycom13g13200 pycom16g13100 pycom16g13110
rosa_chinensis	RchiOBHm_Chr4g0424881 RchiOBHm_Chr4g0424891
rosa_laevigata	RLG00000007412
rosa_multiflora	Rmu_co8066912.1_g000001 Rmu_sc0006754.1_g000003 Rmu_sc0033998.1_g000001
rosa_rugosa	Rorug04G0200300 Rorug04G0200400
rosa_samantha	Rh4AG257700 Rh4AG257800 Rh4BG263100 Rh4BG263200 Rh4CG274100 Rh4CG274200 Rh4DG258800 Rh4DG258900
rosa_wichuraiana	Rw4G022240 Rw4G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AclWI	GGATC	1 cut(s)	482
AcuI	CTGAAG	2 cut(s)	145, 243
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	2 cut(s)	148, 428
AjiI	CACGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	204
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	4 cut(s)	247, 284, 334, 376
AluI	AGCT	4 cut(s)	247, 284, 334, 376
AlwI	GGATC	1 cut(s)	482
AoxI	GGCC	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	349
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	206
BfaI	CTAG	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	144
BoxI	GACNNNNGTC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	204, 205
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bse1I	ACTGG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	204, 205
BseGI	GGATG	3 cut(s)	97, 159, 415
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	457
BshNI	GGYRCC	1 cut(s)	349
BslFI	GGGAC	2 cut(s)	153, 222
BsmFI	GGGAC	2 cut(s)	153, 222
BsnI	GGCC	1 cut(s)	457
Bsp143I	GATC	1 cut(s)	474
BspANI	GGCC	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	2 cut(s)	204, 205
BssMI	GATC	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	423
BstF5I	GGATG	3 cut(s)	97, 159, 415
BstKTI	GATC	1 cut(s)	477
BstMBI	GATC	1 cut(s)	474
BstNI	CCWGG	1 cut(s)	206
BstPAI	GACNNNNGTC	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	457
BtrI	CACGTC	1 cut(s)	392
BtsCI	GGATG	3 cut(s)	97, 159, 415
BtsIMutI	CAGTG	2 cut(s)	81, 487
CviAII	CATG	3 cut(s)	167, 278, 467
CviJI	RGCY	6 cut(s)	221, 247, 284, 334, 376, 457
CviKI_1	RGCY	6 cut(s)	221, 247, 284, 334, 376, 457
DpnI	GATC	1 cut(s)	476
DpnII	GATC	1 cut(s)	474
DraI	TTTAAA	2 cut(s)	51, 366
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco32I	GATATC	1 cut(s)	234
Eco57I	CTGAAG	2 cut(s)	145, 243
EcoRII	CCWGG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	234
FaeI	CATG	3 cut(s)	170, 281, 470
FaiI	YATR	7 cut(s)	168, 183, 279, 290, 356, 468, 505
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 231, 263
FaqI	GGGAC	2 cut(s)	153, 222
FatI	CATG	3 cut(s)	166, 277, 466
FokI	GGATG	3 cut(s)	104, 166, 422
FspBI	CTAG	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	457
Hin1II	CATG	3 cut(s)	170, 281, 470
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HindIII	AAGCTT	3 cut(s)	245, 282, 374
HinfI	GANTC	2 cut(s)	200, 487
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	3 cut(s)	101, 122, 343
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	2 cut(s)	391, 496
HpyCH4V	TGCA	1 cut(s)	418
HpySE526I	ACGT	2 cut(s)	391, 496
Hsp92II	CATG	3 cut(s)	170, 281, 470
Kzo9I	GATC	1 cut(s)	474
LpnPI	CCDG	6 cut(s)	114, 191, 218, 372, 404, 493
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	2 cut(s)	391, 496
MaeIII	GTNAC	3 cut(s)	6, 262, 484
MalI	GATC	1 cut(s)	476
MboI	GATC	1 cut(s)	474
MboII	GAAGA	3 cut(s)	236, 316, 440
MluCI	AATT	2 cut(s)	186, 423
MlyI	GAGTC	1 cut(s)	481
MnlI	CCTC	4 cut(s)	97, 188, 400, 424
MseI	TTAA	4 cut(s)	50, 68, 189, 365
MslI	CAYNNNNRTG	1 cut(s)	482
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
NdeII	GATC	1 cut(s)	474
NlaIII	CATG	3 cut(s)	170, 281, 470
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	2 cut(s)	262, 484
OliI	CACNNNNGTG	1 cut(s)	482
PasI	CCCWGGG	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	200
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PshAI	GACNNNNGTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	351
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	4 cut(s)	50, 68, 189, 365
Sau3AI	GATC	1 cut(s)	474
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	206
SfaNI	GCATC	1 cut(s)	144
SmiI	ATTTAAAT	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	482
Sse9I	AATT	2 cut(s)	186, 423
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	204
SwaI	ATTTAAAT	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	2 cut(s)	394, 499
TasI	AATT	2 cut(s)	186, 423
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	4 cut(s)	50, 68, 189, 365
Tru9I	TTAA	4 cut(s)	50, 68, 189, 365
TscAI	CASTG	2 cut(s)	81, 487
TseFI	GTSAC	2 cut(s)	262, 484
Tsp45I	GTSAC	2 cut(s)	262, 484
TspDTI	ATGAA	2 cut(s)	294, 459
TspRI	CASTG	2 cut(s)	81, 487
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.