Rh4AG257800

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003111
Physical Location & Seq
Forward (+)
57224647 .. 57225241
595 bp
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UTR
Exon/CDS
Intron
Rh4AG257800.1

Sequence Viewer

Length: 417 bp
ATGGTACACCCTCATAACACTTCTAACACCTTAGTATTCAGTCAAAAGGGACACTTCAAAGGGATGCCCTTCAGTCATGTAATCAAACACTATGTAATTAAAGGAGGAGATTCCCAGGGACTTGGAGTGGCTGAAGATTGGATATCAAAAGGGAAGCTTCGTAGTCAACTTGTGACAAGTCCAAAGCATGAAGCTTTTATGCTTGGAACTACGAAGAATAAACTAGAGAACAAAGGATTTGAGCTTGTTATCACGACGGCACCTATACCAGATTTAAATGACAAGCTTATTGTGTTTGGACGTGTCATCAAAGGAGAGGATGTGGTGCAGGAAATTGAAGAGGTTGATACAGATGAACATTATCGGCCTAAATCTCATGTAGGGATCACCAGTGTGACTCTAAAACGTGAGATATAA

Protein Analysis

138

Amino Acids

15.43

Weight (kDa)

8.02

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 4 - 133 5.6e-21 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 259
AclWI GGATC 1 cut(s) 392
AcuI CTGAAG 2 cut(s) 55, 153
AfaI GTAC 1 cut(s) 6
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 2 cut(s) 58, 338
AjiI CACGTC 1 cut(s) 302
AjnI CCWGG 1 cut(s) 114
AleI CACNNNNGTG 1 cut(s) 392
AluBI AGCT 4 cut(s) 157, 194, 244, 286
AluI AGCT 4 cut(s) 157, 194, 244, 286
AlwI GGATC 1 cut(s) 392
AoxI GGCC 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 379
BanI GGYRCC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 116
BfaI CTAG 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 114, 115
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bse1I ACTGG 1 cut(s) 390
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 114, 115
BseGI GGATG 2 cut(s) 69, 325
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 120
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 1 cut(s) 367
BshNI GGYRCC 1 cut(s) 259
BslFI GGGAC 2 cut(s) 63, 132
BsmFI GGGAC 2 cut(s) 63, 132
BsnI GGCC 1 cut(s) 367
Bsp143I GATC 1 cut(s) 384
BspANI GGCC 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 259
BsrI ACTGG 1 cut(s) 390
BssECI CCNNGG 2 cut(s) 114, 115
BssMI GATC 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 69, 325
BstKTI GATC 1 cut(s) 387
BstMBI GATC 1 cut(s) 384
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 122
BsuRI GGCC 1 cut(s) 367
BtrI CACGTC 1 cut(s) 302
BtsCI GGATG 2 cut(s) 69, 325
BtsIMutI CAGTG 1 cut(s) 397
Csp6I GTAC 1 cut(s) 5
CviAII CATG 3 cut(s) 77, 188, 377
CviJI RGCY 6 cut(s) 131, 157, 194, 244, 286, 367
CviKI_1 RGCY 6 cut(s) 131, 157, 194, 244, 286, 367
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 1 cut(s) 31
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
DraI TTTAAA 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 144
Eco57I CTGAAG 2 cut(s) 55, 153
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 144
FaeI CATG 3 cut(s) 80, 191, 380
FaiI YATR 8 cut(s) 15, 78, 93, 189, 200, 266, 378, 415
FalI AAGNNNNNCTT 4 cut(s) 38, 70, 141, 173
FaqI GGGAC 2 cut(s) 63, 132
FatI CATG 3 cut(s) 76, 187, 376
FokI GGATG 2 cut(s) 76, 332
FspBI CTAG 1 cut(s) 224
HaeIII GGCC 1 cut(s) 367
Hin1II CATG 3 cut(s) 80, 191, 380
HincII GTYRAC 1 cut(s) 167
HindII GTYRAC 1 cut(s) 167
HindIII AAGCTT 3 cut(s) 155, 192, 284
HinfI GANTC 2 cut(s) 110, 397
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 2 cut(s) 7, 167
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 2 cut(s) 7, 167
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 79
HpyCH4IV ACGT 2 cut(s) 301, 406
HpyCH4V TGCA 1 cut(s) 328
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 2 cut(s) 301, 406
Hsp92II CATG 3 cut(s) 80, 191, 380
Kzo9I GATC 1 cut(s) 384
LpnPI CCDG 5 cut(s) 101, 128, 282, 314, 403
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 224
MaeII ACGT 2 cut(s) 301, 406
MaeIII GTNAC 2 cut(s) 172, 394
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 3 cut(s) 146, 226, 350
MluCI AATT 2 cut(s) 96, 333
MlyI GAGTC 1 cut(s) 391
MnlI CCTC 4 cut(s) 21, 98, 310, 334
MseI TTAA 2 cut(s) 99, 275
MslI CAYNNNNRTG 1 cut(s) 392
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
NdeII GATC 1 cut(s) 384
NlaIII CATG 3 cut(s) 80, 191, 380
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 2 cut(s) 172, 394
OliI CACNNNNGTG 1 cut(s) 392
PasI CCCWGGG 1 cut(s) 115
PfeI GAWTC 1 cut(s) 110
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 261
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 2 cut(s) 99, 275
Sau3AI GATC 1 cut(s) 384
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 116
SetI ASST 9 cut(s) 32, 159, 196, 246, 265, 288, 304, 345, 409
SfaNI GCATC 1 cut(s) 54
SmiI ATTTAAAT 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 392
Sse9I AATT 2 cut(s) 96, 333
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 114
SwaI ATTTAAAT 1 cut(s) 276
TaiI ACGT 2 cut(s) 304, 409
TasI AATT 2 cut(s) 96, 333
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 2 cut(s) 99, 275
Tru9I TTAA 2 cut(s) 99, 275
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 2 cut(s) 172, 394
Tsp45I GTSAC 2 cut(s) 172, 394
TspDTI ATGAA 2 cut(s) 204, 369
TspRI CASTG 1 cut(s) 397
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.