Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004052

Physical Location & Seq

Genomic Coordinates Reverse (-)

221939 .. 222827

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCCGACGTTCGCACACACTCGCACCAGCTTCAAGTGCACCCTCAACGCCAGCATGAAGGAGGCATCAAAGTCCTTTATCCTCAGAGTGGCCCTTCTTCCACTCAGGTGCTAGCCGTGTTTGTCGGTGTACCGATAGGAGGAACGCTGCTGACTATAGCCGGTTTGACATTAGCCGGTTCGGTTATAGGACTAATGCTAGCATTCCCGTTGTTTCTCATCTTTAGTCCGGTTATTGTACCAGCAGCCTTTGTCATCGGTCTAGCTATGACTGGATTCCTGGCTTCAGGGGCCATAGGTCTCACCGGACTATCATCCATGTCGTGGGTACTCAACTACATCCGCCGGGCCGGGCAGCATATCCCGGAGGAGCTTGAGGAAGCGAAGCATCGTTTGGCTGACATGGCCGAGTATGTGGGACAGAGGACTAAAGATGCTGGACAAACCATAGAAGACAAAGCTCATGATGTCCGAGAGGCCAAGACTTTTGATGTCCGAGACCGAGACACCACCAAGGGTACTCATAATGTCCGAGACACCAAGACTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0010154 GO:0010344 GO:0010876 GO:0012511 GO:0016020 GO:0019915 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050826 GO:0050896 GO:0051179 GO:0051235 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090351 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

183

Amino Acids

19.75

Weight (kDa)

7.11

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oleosin	PF01277	35 - 146	1.4e-42	Oleosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01570 AT3G27660 AT3G27660 AT5G40420
fragaria_vesca	FvH4_5g05960 FvH4_6g51310
malus_domestica	MD06G1169100.v1.1 MD09G1028000.v1.1 MD14G1174400.v1.1 MD17G1029500.v1.1
prunus_persica	Prupe.3G290700_v2.0.a1 Prupe.5G167900_v2.0.a1
pyrus_communis	pycom14g14550
rosa_chinensis	RchiOBHm_Chr2g0172931 RchiOBHm_Chr7g0192881
rosa_laevigata	RLG00000004316 RLG00000022143
rosa_multiflora	Rmu_sc0002040.1_g000052 Rmu_sc0029209.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079410 Rroxscaffold_3G00262590
rosa_rugosa	Rorug02G0563700 Rorug07G0005300
rosa_samantha	Rh2AG640500 Rh2BG654100 Rh2CG619600 Rh2DG667600 Rh7AG131000 Rh7BG131800 Rh7CG135100 Rh7DG132900
rosa_wichuraiana	Rw2G052870 Rw7G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	324
AciI	CCGC	1 cut(s)	343
AcoI	YGGCCR	2 cut(s)	3, 405
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	4 cut(s)	132, 240, 330, 520
AfiI	CCNNNNNNNGG	3 cut(s)	89, 140, 324
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	4 cut(s)	31, 266, 373, 461
AluI	AGCT	4 cut(s)	31, 266, 373, 461
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	4 cut(s)	305, 492, 498, 528
Alw44I	GTGCAC	1 cut(s)	38
AoxI	GGCC	6 cut(s)	3, 91, 291, 348, 405, 477
ApaLI	GTGCAC	1 cut(s)	38
ApeKI	GCWGC	3 cut(s)	148, 245, 355
AspS9I	GGNCC	3 cut(s)	92, 291, 348
AsuC2I	CCSGG	3 cut(s)	347, 352, 365
AsuHPI	GGTGA	1 cut(s)	295
AsuNHI	GCTAGC	2 cut(s)	112, 199
BaeGI	GKGCMC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	3 cut(s)	135, 257, 367
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	281
BcnI	CCSGG	3 cut(s)	347, 352, 365
BcoDI	GTCTC	4 cut(s)	305, 492, 498, 528
BfaI	CTAG	3 cut(s)	113, 200, 263
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	3 cut(s)	149, 246, 356
BlsI	GCNGC	3 cut(s)	150, 247, 357
Bme1390I	CCNGG	4 cut(s)	281, 347, 352, 365
BmgT120I	GGNCC	3 cut(s)	92, 291, 348
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	4 cut(s)	281, 347, 352, 365
BmsI	GCATC	3 cut(s)	75, 397, 424
BmtI	GCTAGC	2 cut(s)	116, 203
BpiI	GAAGAC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	3 cut(s)	347, 352, 365
BsaI	GGTCTC	2 cut(s)	305, 492
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	2 cut(s)	229, 305
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 140, 324
Bse118I	RCCGGY	2 cut(s)	161, 176
Bse1I	ACTGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	314, 339
BseLI	CCNNNNNNNGG	3 cut(s)	89, 140, 324
BseMII	CTCAG	2 cut(s)	98, 119
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	383
BseSI	GKGCMC	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	135, 257, 367
BshFI	GGCC	6 cut(s)	5, 93, 293, 350, 407, 479
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	7 cut(s)	162, 177, 230, 306, 346, 351, 365
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	3 cut(s)	89, 140, 324
BsmAI	GTCTC	4 cut(s)	305, 492, 498, 528
BsmFI	GGGAC	1 cut(s)	432
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	6 cut(s)	5, 93, 293, 350, 407, 479
Bso31I	GGTCTC	2 cut(s)	305, 492
Bsp1286I	GDGCHC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	6 cut(s)	5, 93, 293, 350, 407, 479
BspCNI	CTCAG	2 cut(s)	97, 118
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	292
BspOI	GCTAGC	2 cut(s)	116, 203
BspTNI	GGTCTC	2 cut(s)	305, 492
BsrFI	RCCGGY	2 cut(s)	161, 176
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	2 cut(s)	161, 176
BssECI	CCNNGG	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	53, 114, 201
BstDEI	CTNAG	2 cut(s)	84, 105
BstF5I	GGATG	2 cut(s)	314, 339
BstMAI	GTCTC	4 cut(s)	305, 492, 498, 528
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 290, 404
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	4 cut(s)	279, 345, 350, 363
BstSFI	CTRYAG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	135, 257, 367
BstV2I	GAAGAC	1 cut(s)	459
BsuRI	GGCC	6 cut(s)	5, 93, 293, 350, 407, 479
BtsCI	GGATG	2 cut(s)	314, 339
Cac8I	GCNNGC	3 cut(s)	53, 114, 201
CciI	TCATGA	1 cut(s)	463
Cfr10I	RCCGGY	2 cut(s)	161, 176
Cfr13I	GGNCC	3 cut(s)	92, 291, 348
Csp6I	GTAC	4 cut(s)	131, 239, 329, 519
CviAII	CATG	4 cut(s)	56, 319, 403, 464
CviQI	GTAC	4 cut(s)	131, 239, 329, 519
DdeI	CTNAG	2 cut(s)	84, 105
EaeI	YGGCCR	2 cut(s)	3, 405
EciI	GGCGGA	1 cut(s)	332
Eco130I	CCWWGG	1 cut(s)	513
Eco31I	GGTCTC	2 cut(s)	305, 492
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	4 cut(s)	59, 322, 406, 467
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	4 cut(s)	55, 318, 402, 463
Fnu4HI	GCNGC	3 cut(s)	149, 246, 356
FokI	GGATG	2 cut(s)	301, 326
Fsp4HI	GCNGC	3 cut(s)	149, 246, 356
FspBI	CTAG	3 cut(s)	113, 200, 263
GluI	GCNGC	3 cut(s)	149, 246, 356
HaeIII	GGCC	6 cut(s)	5, 93, 293, 350, 407, 479
HapII	CCGG	7 cut(s)	162, 177, 230, 306, 346, 351, 365
Hin1II	CATG	4 cut(s)	59, 322, 406, 467
HinfI	GANTC	1 cut(s)	276
HpaII	CCGG	7 cut(s)	162, 177, 230, 306, 346, 351, 365
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	2 cut(s)	40, 131
Hpy188I	TCNGA	4 cut(s)	87, 473, 497, 533
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	2 cut(s)	40, 131
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	53, 105
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 290, 404
HpyF3I	CTNAG	2 cut(s)	84, 105
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	4 cut(s)	59, 322, 406, 467
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	3 cut(s)	135, 257, 367
LweI	GCATC	3 cut(s)	75, 397, 424
MaeI	CTAG	3 cut(s)	113, 200, 263
MaeII	ACGT	1 cut(s)	9
MboII	GAAGA	2 cut(s)	90, 464
MhlI	GDGCHC	1 cut(s)	42
MnlI	CCTC	8 cut(s)	54, 56, 93, 134, 361, 370, 417, 469
MslI	CAYNNNNRTG	1 cut(s)	107
MspI	CCGG	7 cut(s)	162, 177, 230, 306, 346, 351, 365
MspR9I	CCNGG	4 cut(s)	281, 347, 352, 365
Mva1269I	GAATGC	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	37, 290, 404
NciI	CCSGG	3 cut(s)	347, 352, 365
NheI	GCTAGC	2 cut(s)	112, 199
NlaIII	CATG	4 cut(s)	59, 322, 406, 467
NlaIV	GGNNCC	1 cut(s)	292
NmeAIII	GCCGAG	1 cut(s)	433
OliI	CACNNNNGTG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	463
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	276
PflMI	CCANNNNNTGG	1 cut(s)	324
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	3 cut(s)	150, 247, 357
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	3 cut(s)	92, 291, 348
RsaI	GTAC	4 cut(s)	132, 240, 330, 520
RsaNI	GTAC	4 cut(s)	131, 239, 329, 519
RseI	CAYNNNNRTG	1 cut(s)	107
SatI	GCNGC	3 cut(s)	149, 246, 356
Sau96I	GGNCC	3 cut(s)	92, 291, 348
ScrFI	CCNGG	4 cut(s)	281, 347, 352, 365
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	7 cut(s)	12, 33, 111, 268, 301, 375, 463
SfaNI	GCATC	3 cut(s)	75, 397, 424
SfcI	CTRYAG	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	3 cut(s)	113, 200, 263
StyD4I	CCNGG	4 cut(s)	279, 345, 350, 363
StyI	CCWWGG	1 cut(s)	513
TaiI	ACGT	1 cut(s)	12
TaqII	GACCGA	2 cut(s)	248, 516
TfiI	GAWTC	1 cut(s)	276
TseI	GCWGC	3 cut(s)	148, 245, 355
TspDTI	ATGAA	1 cut(s)	72
Van91I	CCANNNNNTGG	1 cut(s)	324
VneI	GTGCAC	1 cut(s)	38
XspI	CTAG	3 cut(s)	113, 200, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.