Rh7DG132900

Oleosin 16.4 kDa-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004052
Physical Location & Seq
Forward (+)
11232160 .. 11232828
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG132900.1

Sequence Viewer

Length: 669 bp
ATGGCGGATCAGAGAAAGCAACATCAGCAGCAACAATACCGCGGTGTTGGCGATGATCAGCAGAGCCAGCAGTACTACGGCGGTGGCGGTGATCAGCAGAATCAGCAGTACCAGTACTCCTCGGACGCTAAGAGCCTCCTTCCCCAACATGGACCCTCCGCCTCACAAGTCATTGCAGTCATAACTCTTGTTCCTCTCGGTGGGACCCTCCTACTGCTCGCCGGCCTCACACTGGCCGGAACTTTCATTGGGATGGCCCTCTCGACGCCGCTGTTTGTGATTTTCAGCCCTATTTTGGTGCCGGCTATTGCCACCATCGGCTTGGCTGTGGCCGGCATTTTGACCTCGGGGGCTTTCGGGATCACGGGGCTCTCGTCTTTCTCGTGGTTGGCCAACTATCTGAGACGCACGCATCTGCCGCAGCAGGCAATCCGGGGCGTGCAGGAGACTTCGGGCCAGTTGACGCATAAGGCTAGGGATCTGGGCCGCACTGTCTCCGAAAAGACCCAGGAAGCTGGCCAAGCTGTCCAGGGGAAGGCCCAAGAAGTGGACCAGGCTGTGCAGAGCAAGGCCAATGTCCAAAGCAAGGCCCAAGAAGTAGGACAGAAGGCCCAGGATACTGGAAGGAGTCACGAAGGCGGTAGAGCTCGGGATGTGAAGGTGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

222

Amino Acids

23.6

Weight (kDa)

9.39

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 55 - 165 6.8e-36 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 298
AccB7I CCANNNNNTGG 1 cut(s) 547
AccII CGCG 1 cut(s) 42
AclWI GGATC 3 cut(s) 15, 368, 486
AcoI YGGCCR 4 cut(s) 234, 330, 390, 517
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 3 cut(s) 74, 110, 116
AfiI CCNNNNNNNGG 7 cut(s) 149, 200, 232, 295, 535, 547, 586
AjnI CCWGG 4 cut(s) 507, 528, 552, 612
AluBI AGCT 3 cut(s) 515, 524, 647
AluI AGCT 3 cut(s) 515, 524, 647
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 3 cut(s) 397, 440, 499
AlwI GGATC 3 cut(s) 15, 368, 486
Ama87I CYCGRG 2 cut(s) 346, 648
ApeKI GCWGC 2 cut(s) 28, 421
AspS9I GGNCC 9 cut(s) 152, 204, 256, 454, 484, 538, 550, 589, 610
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 101
AvaI CYCGRG 2 cut(s) 346, 648
AvaII GGWCC 3 cut(s) 152, 204, 550
BalI TGGCCA 2 cut(s) 392, 519
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 2 cut(s) 372, 649
BauI CACGAG 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 2 cut(s) 40, 433
BccI CCATC 2 cut(s) 247, 323
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 4 cut(s) 509, 530, 554, 614
BciVI GTATCC 1 cut(s) 610
BclI TGATCA 2 cut(s) 55, 91
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 3 cut(s) 397, 440, 499
BfaI CTAG 1 cut(s) 474
BfuI GTATCC 1 cut(s) 610
BisI GCNGC 5 cut(s) 29, 269, 419, 422, 487
BlsI GCNGC 5 cut(s) 30, 270, 420, 423, 488
BmcAI AGTACT 2 cut(s) 74, 116
Bme1390I CCNGG 5 cut(s) 434, 509, 530, 554, 614
Bme18I GGWCC 3 cut(s) 152, 204, 550
BmeT110I CYCGRG 2 cut(s) 346, 648
BmgT120I GGNCC 9 cut(s) 152, 204, 256, 454, 484, 538, 550, 589, 610
BmiI GGNNCC 4 cut(s) 154, 205, 206, 300
BmrFI CCNGG 5 cut(s) 434, 509, 530, 554, 614
BmsI GCATC 1 cut(s) 421
BpuMI CCSGG 1 cut(s) 434
BsaHI GRCGYC 1 cut(s) 266
BsaJI CCNNGG 7 cut(s) 40, 120, 345, 433, 507, 529, 612
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 7 cut(s) 149, 200, 232, 295, 535, 547, 586
Bse118I RCCGGY 3 cut(s) 221, 301, 332
Bse1I ACTGG 4 cut(s) 112, 237, 457, 625
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 4 cut(s) 509, 530, 554, 614
BseDI CCNNGG 7 cut(s) 40, 120, 345, 433, 507, 529, 612
BseGI GGATG 2 cut(s) 258, 658
BseLI CCNNNNNNNGG 7 cut(s) 149, 200, 232, 295, 535, 547, 586
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 4 cut(s) 112, 237, 457, 625
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 40, 433
BsgI GTGCAG 2 cut(s) 461, 581
Bsh1236I CGCG 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 649
BsiHKCI CYCGRG 2 cut(s) 346, 648
BsiSI CCGG 5 cut(s) 222, 237, 302, 333, 433
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 7 cut(s) 149, 200, 232, 295, 535, 547, 586
BsmAI GTCTC 3 cut(s) 397, 440, 499
BsmBI CGTCTC 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 217
BsoBI CYCGRG 2 cut(s) 346, 648
Bsp1286I GDGCHC 2 cut(s) 372, 649
Bsp143I GATC 5 cut(s) 7, 55, 91, 360, 478
BspCNI CTCAG 1 cut(s) 393
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 4 cut(s) 154, 205, 206, 300
BspPI GGATC 3 cut(s) 15, 368, 486
BspT107I GGYRCC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 171
BsrFI RCCGGY 3 cut(s) 221, 301, 332
BsrI ACTGG 4 cut(s) 112, 237, 457, 625
BssAI RCCGGY 3 cut(s) 221, 301, 332
BssECI CCNNGG 7 cut(s) 40, 120, 345, 433, 507, 529, 612
BssMI GATC 5 cut(s) 7, 55, 91, 360, 478
BssNI GRCGYC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 382
Bst2BI CACGAG 1 cut(s) 382
Bst2UI CCWGG 4 cut(s) 509, 530, 554, 614
Bst4CI ACNGT 1 cut(s) 493
BstACI GRCGYC 1 cut(s) 266
BstC8I GCNNGC 9 cut(s) 68, 219, 223, 303, 334, 410, 426, 440, 517
BstDEI CTNAG 2 cut(s) 129, 401
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 2 cut(s) 258, 658
BstFNI CGCG 1 cut(s) 42
BstKTI GATC 5 cut(s) 10, 58, 94, 363, 481
BstMAI GTCTC 3 cut(s) 397, 440, 499
BstMBI GATC 5 cut(s) 7, 55, 91, 360, 478
BstMWI GCNNNNNNNGC 6 cut(s) 25, 48, 67, 103, 418, 521
BstNI CCWGG 4 cut(s) 509, 530, 554, 614
BstSCI CCNGG 5 cut(s) 432, 507, 528, 552, 612
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 40, 433
BstX2I RGATCY 1 cut(s) 478
BstXI CCANNNNNNTGG 3 cut(s) 322, 515, 620
BstYI RGATCY 1 cut(s) 478
BsuI GTATCC 1 cut(s) 610
BtgI CCRYGG 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 258, 658
BtsIMutI CAGTG 2 cut(s) 230, 489
Cac8I GCNNGC 9 cut(s) 68, 219, 223, 303, 334, 410, 426, 440, 517
Cfr10I RCCGGY 3 cut(s) 221, 301, 332
Cfr13I GGNCC 9 cut(s) 152, 204, 256, 454, 484, 538, 550, 589, 610
Cfr42I CCGCGG 1 cut(s) 43
CseI GACGC 4 cut(s) 134, 274, 414, 472
Csp6I GTAC 3 cut(s) 73, 109, 115
CviAII CATG 1 cut(s) 149
CviQI GTAC 3 cut(s) 73, 109, 115
DdeI CTNAG 2 cut(s) 129, 401
DpnI GATC 5 cut(s) 9, 57, 93, 362, 480
DpnII GATC 5 cut(s) 7, 55, 91, 360, 478
EaeI YGGCCR 4 cut(s) 234, 330, 390, 517
EciI GGCGGA 2 cut(s) 20, 148
Ecl136II GAGCTC 1 cut(s) 647
Eco24I GRGCYC 2 cut(s) 372, 649
Eco47I GGWCC 3 cut(s) 152, 204, 550
Eco53kI GAGCTC 1 cut(s) 647
Eco88I CYCGRG 2 cut(s) 346, 648
EcoICRI GAGCTC 1 cut(s) 647
EcoO109I RGGNCCY 1 cut(s) 204
EcoRII CCWGG 4 cut(s) 507, 528, 552, 612
EcoT38I GRGCYC 2 cut(s) 372, 649
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 1 cut(s) 152
FaiI YATR 4 cut(s) 150, 182, 468, 667
FaqI GGGAC 1 cut(s) 217
FatI CATG 1 cut(s) 148
FbaI TGATCA 2 cut(s) 55, 91
Fnu4HI GCNGC 5 cut(s) 29, 269, 419, 422, 487
FokI GGATG 2 cut(s) 265, 665
FriOI GRGCYC 2 cut(s) 372, 649
Fsp4HI GCNGC 5 cut(s) 29, 269, 419, 422, 487
FspBI CTAG 1 cut(s) 474
GluI GCNGC 5 cut(s) 29, 269, 419, 422, 487
HapII CCGG 5 cut(s) 222, 237, 302, 333, 433
HgaI GACGC 4 cut(s) 134, 274, 414, 472
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 1 cut(s) 152
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HinfI GANTC 2 cut(s) 100, 628
HpaII CCGG 5 cut(s) 222, 237, 302, 333, 433
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 2 cut(s) 462, 550
Hpy188I TCNGA 4 cut(s) 12, 124, 402, 499
Hpy188III TCNNGA 4 cut(s) 262, 358, 632, 650
Hpy8I GTNNAC 2 cut(s) 462, 550
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 6 cut(s) 149, 529, 601, 618, 629, 652
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4V TGCA 3 cut(s) 176, 442, 562
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 48, 67, 103, 418, 521
HpyF3I CTNAG 2 cut(s) 129, 401
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 1 cut(s) 152
KflI GGGWCCC 1 cut(s) 204
KroI GCCGGC 3 cut(s) 221, 301, 332
KroNI GCCGGC 3 cut(s) 223, 303, 334
Ksp22I TGATCA 2 cut(s) 55, 91
KspI CCGCGG 1 cut(s) 43
Kzo9I GATC 5 cut(s) 7, 55, 91, 360, 478
Lsp1109I GCAGC 2 cut(s) 40, 433
LweI GCATC 1 cut(s) 421
MaeI CTAG 1 cut(s) 474
MaeIII GTNAC 2 cut(s) 629, 661
MalI GATC 5 cut(s) 9, 57, 93, 362, 480
MboI GATC 5 cut(s) 7, 55, 91, 360, 478
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 2 cut(s) 372, 649
MlsI TGGCCA 2 cut(s) 392, 519
MluNI TGGCCA 2 cut(s) 392, 519
MlyI GAGTC 1 cut(s) 637
MnlI CCTC 9 cut(s) 130, 146, 166, 172, 204, 218, 236, 269, 355
Mox20I TGGCCA 2 cut(s) 392, 519
MroNI GCCGGC 3 cut(s) 221, 301, 332
MscI TGGCCA 2 cut(s) 392, 519
MslI CAYNNNNRTG 1 cut(s) 251
Msp20I TGGCCA 2 cut(s) 392, 519
MspA1I CMGCKG 2 cut(s) 42, 271
MspI CCGG 5 cut(s) 222, 237, 302, 333, 433
MspR9I CCNGG 5 cut(s) 434, 509, 530, 554, 614
MvaI CCWGG 4 cut(s) 509, 530, 554, 614
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 6 cut(s) 25, 48, 67, 103, 418, 521
NaeI GCCGGC 3 cut(s) 223, 303, 334
NciI CCSGG 1 cut(s) 434
NdeII GATC 5 cut(s) 7, 55, 91, 360, 478
NgoMIV GCCGGC 3 cut(s) 221, 301, 332
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 4 cut(s) 154, 205, 206, 300
NmuCI GTSAC 2 cut(s) 629, 661
PcsI WCGNNNNNNNCGW 2 cut(s) 371, 380
PdiI GCCGGC 3 cut(s) 223, 303, 334
PfeI GAWTC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 5 cut(s) 30, 270, 420, 423, 488
PleI GAGTC 1 cut(s) 636
PpsI GAGTC 1 cut(s) 636
PpuMI RGGWCCY 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 649
Psp5II RGGWCCY 1 cut(s) 204
Psp6I CCWGG 4 cut(s) 507, 528, 552, 612
PspGI CCWGG 4 cut(s) 507, 528, 552, 612
PspN4I GGNNCC 4 cut(s) 154, 205, 206, 300
PspPI GGNCC 9 cut(s) 152, 204, 256, 454, 484, 538, 550, 589, 610
PspPPI RGGWCCY 1 cut(s) 204
PsuI RGATCY 1 cut(s) 478
RsaI GTAC 3 cut(s) 74, 110, 116
RsaNI GTAC 3 cut(s) 73, 109, 115
RseI CAYNNNNRTG 1 cut(s) 251
SacI GAGCTC 1 cut(s) 649
SacII CCGCGG 1 cut(s) 43
SatI GCNGC 5 cut(s) 29, 269, 419, 422, 487
Sau3AI GATC 5 cut(s) 7, 55, 91, 360, 478
Sau96I GGNCC 9 cut(s) 152, 204, 256, 454, 484, 538, 550, 589, 610
ScaI AGTACT 2 cut(s) 74, 116
SchI GAGTC 1 cut(s) 637
ScrFI CCNGG 5 cut(s) 434, 509, 530, 554, 614
SduI GDGCHC 2 cut(s) 372, 649
SetI ASST 5 cut(s) 347, 517, 526, 649, 663
SfaNI GCATC 1 cut(s) 421
Sfr303I CCGCGG 1 cut(s) 43
SgrBI CCGCGG 1 cut(s) 43
SinI GGWCC 3 cut(s) 152, 204, 550
SmiMI CAYNNNNRTG 1 cut(s) 251
SspMI CTAG 1 cut(s) 474
SstI GAGCTC 1 cut(s) 649
StyD4I CCNGG 5 cut(s) 432, 507, 528, 552, 612
TaaI ACNGT 1 cut(s) 493
TaqI TCGA 1 cut(s) 263
TatI WGTACW 2 cut(s) 72, 114
TauI GCSGC 3 cut(s) 271, 421, 489
TfiI GAWTC 1 cut(s) 100
TscAI CASTG 2 cut(s) 237, 496
TseFI GTSAC 2 cut(s) 629, 661
TseI GCWGC 2 cut(s) 28, 421
Tsp45I GTSAC 2 cut(s) 629, 661
TspDTI ATGAA 1 cut(s) 235
TspRI CASTG 2 cut(s) 237, 496
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 3 cut(s) 152, 204, 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XspI CTAG 1 cut(s) 474
ZrmI AGTACT 2 cut(s) 74, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.