Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004052

Physical Location & Seq

Genomic Coordinates Reverse (-)

26080047 .. 26080918

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G290700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCGGATCGTCCTCAGCCACACCAGCTCCAAGTTCGTCCCCAGCATGGCCTTGGGGCCAAGACCCAATACCAAGGCCCGTCCACTGGCCAGGTCCTCGCAGTCATAACTGGCCTTCCTGTTGGCGGAACCCTGCTAGCGCTTGCTGGTCTCACACTCATGGGCACCATCATTGGGGCTCTGTTGGCCACCCCACTCTTCATCATCTTCAGCCCGGTTCTTGTCCCGGCTATCTTTGTCATTGGCCTGGCTGTTACCGGATTTCTAACTTCGGGCGCTTTTGGACTGACTGCACTCTCGTCTCTGTCTTGGGTCACCAACTACCTCCGGAGGGCCACGGGGTTGGTGCCGGAGCAGCTGGACCAGATGAAGAGGCGCACGGCGGATATGGTGGAGTTTGTGGGACAGAAGACCAAGGAGGGCAGCCAAGACATCCAGAGTAAGGCCCAAGACGAAAAGAGGAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0010154 GO:0010344 GO:0010876 GO:0012511 GO:0016020 GO:0019915 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050826 GO:0050896 GO:0051179 GO:0051235 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090351 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

157

Amino Acids

16.63

Weight (kDa)

9.98

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01570 AT3G27660 AT3G27660 AT5G40420
fragaria_vesca	FvH4_5g05960 FvH4_6g51310
malus_domestica	MD06G1169100.v1.1 MD09G1028000.v1.1 MD14G1174400.v1.1 MD17G1029500.v1.1
prunus_persica	Prupe.3G290700_v2.0.a1 Prupe.5G167900_v2.0.a1
pyrus_communis	pycom14g14550
rosa_chinensis	RchiOBHm_Chr2g0172931 RchiOBHm_Chr7g0192881
rosa_laevigata	RLG00000004316 RLG00000022143
rosa_multiflora	Rmu_sc0002040.1_g000052 Rmu_sc0029209.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079410 Rroxscaffold_3G00262590
rosa_rugosa	Rorug02G0563700 Rorug07G0005300
rosa_samantha	Rh2AG640500 Rh2BG654100 Rh2CG619600 Rh2DG667600 Rh7AG131000 Rh7BG131800 Rh7CG135100 Rh7DG132900
rosa_wichuraiana	Rw2G052870 Rw7G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	164, 346
AccIII	TCCGGA	1 cut(s)	327
AciI	CCGC	3 cut(s)	5, 126, 383
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	2 cut(s)	88, 186
AcuI	CTGAAG	1 cut(s)	193
AfeI	AGCGCT	1 cut(s)	141
AfiI	CCNNNNNNNGG	6 cut(s)	47, 86, 125, 174, 331, 442
AjnI	CCWGG	2 cut(s)	90, 246
AluBI	AGCT	2 cut(s)	28, 358
AluI	AGCT	2 cut(s)	28, 358
Alw26I	GTCTC	2 cut(s)	155, 306
AlwI	GGATC	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	327
Aor51HI	AGCGCT	1 cut(s)	141
AoxI	GGCC	9 cut(s)	49, 57, 76, 88, 112, 186, 244, 333, 444
ApeKI	GCWGC	2 cut(s)	355, 423
AspLEI	GCGC	3 cut(s)	142, 278, 378
AspS9I	GGNCC	6 cut(s)	57, 77, 94, 333, 361, 445
AsuC2I	CCSGG	2 cut(s)	215, 227
AsuHPI	GGTGA	1 cut(s)	307
AsuNHI	GCTAGC	1 cut(s)	136
AvaII	GGWCC	2 cut(s)	94, 361
BaeGI	GKGCMC	1 cut(s)	167
BalI	TGGCCA	2 cut(s)	90, 188
BanI	GGYRCC	2 cut(s)	164, 346
BanII	GRGCYC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	416
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	367, 435
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	396
BciT130I	CCWGG	2 cut(s)	92, 248
BcnI	CCSGG	2 cut(s)	215, 227
BcoDI	GTCTC	2 cut(s)	155, 306
BfaI	CTAG	1 cut(s)	137
BfoI	RGCGCY	2 cut(s)	143, 279
BisI	GCNGC	2 cut(s)	356, 424
BlsI	GCNGC	2 cut(s)	357, 425
Bme1390I	CCNGG	4 cut(s)	92, 215, 227, 248
Bme18I	GGWCC	2 cut(s)	94, 361
BmgT120I	GGNCC	6 cut(s)	57, 77, 94, 333, 361, 445
BmiI	GGNNCC	4 cut(s)	58, 130, 166, 348
BmrFI	CCNGG	4 cut(s)	92, 215, 227, 248
BmtI	GCTAGC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	15
BpuMI	CCSGG	2 cut(s)	215, 227
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	4 cut(s)	52, 73, 336, 414
BsaWI	WCCGGW	2 cut(s)	257, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	6 cut(s)	47, 86, 125, 174, 331, 442
Bse1I	ACTGG	2 cut(s)	91, 115
BseAI	TCCGGA	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	92, 248
BseDI	CCNNGG	4 cut(s)	52, 73, 336, 414
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	6 cut(s)	47, 86, 125, 174, 331, 442
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	91, 115
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	367, 435
BseYI	CCCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	9 cut(s)	51, 59, 78, 90, 114, 188, 246, 335, 446
BshNI	GGYRCC	2 cut(s)	164, 346
BsiSI	CCGG	5 cut(s)	215, 227, 258, 328, 350
BslFI	GGGAC	3 cut(s)	24, 209, 417
BslI	CCNNNNNNNGG	6 cut(s)	47, 86, 125, 174, 331, 442
BsmAI	GTCTC	2 cut(s)	155, 306
BsmBI	CGTCTC	1 cut(s)	306
BsmFI	GGGAC	3 cut(s)	24, 209, 417
BsnI	GGCC	9 cut(s)	51, 59, 78, 90, 114, 188, 246, 335, 446
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	167, 181
Bsp13I	TCCGGA	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	3 cut(s)	5, 126, 383
BspANI	GGCC	9 cut(s)	51, 59, 78, 90, 114, 188, 246, 335, 446
BspCNI	CTCAG	1 cut(s)	28
BspEI	TCCGGA	1 cut(s)	327
BspLI	GGNNCC	4 cut(s)	58, 130, 166, 348
BspOI	GCTAGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	15
BspT107I	GGYRCC	2 cut(s)	164, 346
BspTNI	GGTCTC	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	91, 115
BssECI	CCNNGG	4 cut(s)	52, 73, 336, 414
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	3 cut(s)	52, 73, 414
Bst2UI	CCWGG	2 cut(s)	92, 248
Bst6I	CTCTTC	2 cut(s)	203, 365
BstC8I	GCNNGC	2 cut(s)	138, 144
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	313
BstF5I	GGATG	1 cut(s)	432
BstH2I	RGCGCY	2 cut(s)	143, 279
BstHHI	GCGC	3 cut(s)	142, 278, 378
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	2 cut(s)	155, 306
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 185, 355
BstNI	CCWGG	2 cut(s)	92, 248
BstPI	GGTNACC	1 cut(s)	313
BstSCI	CCNGG	4 cut(s)	90, 213, 225, 246
BstSLI	GKGCMC	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	367, 435
BstV2I	GAAGAC	1 cut(s)	416
BstXI	CCANNNNNNTGG	1 cut(s)	343
BsuRI	GGCC	9 cut(s)	51, 59, 78, 90, 114, 188, 246, 335, 446
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	138, 144
CfoI	GCGC	3 cut(s)	142, 278, 378
Cfr13I	GGNCC	6 cut(s)	57, 77, 94, 333, 361, 445
CviAII	CATG	3 cut(s)	47, 160, 468
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
EaeI	YGGCCR	2 cut(s)	88, 186
Eam1104I	CTCTTC	2 cut(s)	203, 365
EarI	CTCTTC	2 cut(s)	203, 365
EciI	GGCGGA	3 cut(s)	20, 141, 398
Eco130I	CCWWGG	3 cut(s)	52, 73, 414
Eco24I	GRGCYC	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	94, 361
Eco47III	AGCGCT	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	193
Eco91I	GGTNACC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	90, 246
EcoT14I	CCWWGG	3 cut(s)	52, 73, 414
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	3 cut(s)	52, 73, 414
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	3 cut(s)	50, 163, 471
FaiI	YATR	5 cut(s)	48, 107, 161, 389, 469
FaqI	GGGAC	3 cut(s)	24, 209, 417
FatI	CATG	3 cut(s)	46, 159, 467
Fnu4HI	GCNGC	2 cut(s)	356, 424
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	2 cut(s)	356, 424
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	3 cut(s)	141, 277, 377
GluI	GCNGC	2 cut(s)	356, 424
GsaI	CCCAGC	1 cut(s)	46
HaeII	RGCGCY	2 cut(s)	143, 279
HaeIII	GGCC	9 cut(s)	51, 59, 78, 90, 114, 188, 246, 335, 446
HapII	CCGG	5 cut(s)	215, 227, 258, 328, 350
HhaI	GCGC	3 cut(s)	142, 278, 378
Hin1II	CATG	3 cut(s)	50, 163, 471
Hin6I	GCGC	3 cut(s)	140, 276, 376
HinP1I	GCGC	3 cut(s)	140, 276, 376
HpaII	CCGG	5 cut(s)	215, 227, 258, 328, 350
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188III	TCNNGA	2 cut(s)	328, 436
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	125
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 185, 355
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	50, 163, 471
HspAI	GCGC	3 cut(s)	140, 276, 376
Kpn2I	TCCGGA	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	33, 352
Lsp1109I	GCAGC	2 cut(s)	367, 435
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	253, 313
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	4 cut(s)	190, 199, 382, 421
MhlI	GDGCHC	2 cut(s)	167, 181
MlsI	TGGCCA	2 cut(s)	90, 188
MluNI	TGGCCA	2 cut(s)	90, 188
MnlI	CCTC	8 cut(s)	24, 107, 324, 335, 366, 412, 453, 456
Mox20I	TGGCCA	2 cut(s)	90, 188
MroI	TCCGGA	1 cut(s)	327
MscI	TGGCCA	2 cut(s)	90, 188
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	2 cut(s)	90, 188
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	5 cut(s)	215, 227, 258, 328, 350
MspR9I	CCNGG	4 cut(s)	92, 215, 227, 248
MvaI	CCWGG	2 cut(s)	92, 248
MwoI	GCNNNNNNNGC	3 cut(s)	25, 185, 355
NciI	CCSGG	2 cut(s)	215, 227
NdeII	GATC	1 cut(s)	7
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	3 cut(s)	50, 163, 471
NlaIV	GGNNCC	4 cut(s)	58, 130, 166, 348
NmuCI	GTSAC	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	357, 425
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	90, 246
PspEI	GGTNACC	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	2 cut(s)	90, 246
PspN4I	GGNNCC	4 cut(s)	58, 130, 166, 348
PspPI	GGNCC	6 cut(s)	57, 77, 94, 333, 361, 445
PspPPI	RGGWCCY	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	158
SatI	GCNGC	2 cut(s)	356, 424
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	6 cut(s)	57, 77, 94, 333, 361, 445
ScrFI	CCNGG	4 cut(s)	92, 215, 227, 248
SduI	GDGCHC	2 cut(s)	167, 181
SetI	ASST	4 cut(s)	30, 96, 327, 360
SinI	GGWCC	2 cut(s)	94, 361
SmiMI	CAYNNNNRTG	1 cut(s)	158
SsiI	CCGC	3 cut(s)	5, 126, 383
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	4 cut(s)	90, 213, 225, 246
StyI	CCWWGG	3 cut(s)	52, 73, 414
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	355, 423
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	190, 383
TspRI	CASTG	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	94, 361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.