Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004052

Physical Location & Seq

Genomic Coordinates Forward (+)

79470874 .. 79471392

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG619600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCCGACCGTCCTCAGCCACACCAGATCCAAGTCCGCCCGGCACAGTCACGATTTGACCAGGTCGGAGACTACAAGGGCATGCAGGTTCAGCAACAACAGCGTGGTCCATCGACCGGAAAGATCCTCGCCGTGGTGACTCTCCTTCCGGTCGGTGGAACCCTGCTTGGTTTGGCTGGACTCACACTCATGGCCACCATCATCGGGCTTCTTTGTGCGACACCGCTCTTCCTTATCTTCAGCCCGGTTCTTGTTCCGGCTGCCATTGCTACAGGCCTTGCCGTCATGGCGTTCATCACATCGGGGGCTTTTGGGCTCACTGGACTCTCGTCACTGTCTTGGGTCACAAACTACCTCCGTCGGGCAACTGGGGGAGTGCCGGAGCAGCTGGACTCGGCCAAGAGGCGCATGGCAGATATGGGGGAGTATTTTGGACAGAAGACGAAGGAGGTGGGTCAGGACATCCAGCATAAGGCGCAGGAAACGAAGAGGACAACCGGAGCTCTTGAGAGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0010154 GO:0010344 GO:0010876 GO:0012511 GO:0016020 GO:0019915 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050826 GO:0050896 GO:0051179 GO:0051235 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090351 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

172

Amino Acids

18.4

Weight (kDa)

9.83

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oleosin	PF01277	41 - 152	4.8e-41	Oleosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01570 AT3G27660 AT3G27660 AT5G40420
fragaria_vesca	FvH4_5g05960 FvH4_6g51310
malus_domestica	MD06G1169100.v1.1 MD09G1028000.v1.1 MD14G1174400.v1.1 MD17G1029500.v1.1
prunus_persica	Prupe.3G290700_v2.0.a1 Prupe.5G167900_v2.0.a1
pyrus_communis	pycom14g14550
rosa_chinensis	RchiOBHm_Chr2g0172931 RchiOBHm_Chr7g0192881
rosa_laevigata	RLG00000004316 RLG00000022143
rosa_multiflora	Rmu_sc0002040.1_g000052 Rmu_sc0029209.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079410 Rroxscaffold_3G00262590
rosa_rugosa	Rorug02G0563700 Rorug07G0005300
rosa_samantha	Rh2AG640500 Rh2BG654100 Rh2CG619600 Rh2DG667600 Rh7AG131000 Rh7BG131800 Rh7CG135100 Rh7DG132900
rosa_wichuraiana	Rw2G052870 Rw7G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	2 cut(s)	37, 224
AclWI	GGATC	2 cut(s)	22, 118
AcoI	YGGCCR	3 cut(s)	3, 192, 396
AcuI	CTGAAG	1 cut(s)	223
AfiI	CCNNNNNNNGG	6 cut(s)	116, 133, 155, 204, 361, 472
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	2 cut(s)	388, 503
AluI	AGCT	2 cut(s)	388, 503
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	22, 118
AoxI	GGCC	4 cut(s)	3, 192, 274, 396
ApeKI	GCWGC	2 cut(s)	260, 385
AspLEI	GCGC	2 cut(s)	408, 478
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	2 cut(s)	41, 245
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	194
BanII	GRGCYC	2 cut(s)	318, 505
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	505
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	247, 397
BccI	CCATC	2 cut(s)	118, 206
BceAI	ACGGC	3 cut(s)	116, 266, 498
BciT130I	CCWGG	1 cut(s)	62
BcnI	CCSGG	2 cut(s)	41, 245
BcoDI	GTCTC	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	76
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	2 cut(s)	261, 386
BlsI	GCNGC	2 cut(s)	262, 387
Bme1390I	CCNGG	3 cut(s)	41, 62, 245
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	3 cut(s)	41, 62, 245
BmrI	ACTGGG	1 cut(s)	378
BmuI	ACTGGG	1 cut(s)	378
BoxI	GACNNNNGTC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	446
Bpu10I	CCTNAGC	1 cut(s)	15
BpuMI	CCSGG	2 cut(s)	41, 245
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	3 cut(s)	116, 148, 497
Bsc4I	CCNNNNNNNGG	6 cut(s)	116, 133, 155, 204, 361, 472
Bse1I	ACTGG	2 cut(s)	325, 373
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	6 cut(s)	116, 133, 155, 204, 361, 472
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	325, 373
BseXI	GCAGC	2 cut(s)	247, 397
Bsh1285I	CGRYCG	3 cut(s)	10, 117, 153
BshFI	GGCC	4 cut(s)	5, 194, 276, 398
BsiEI	CGRYCG	3 cut(s)	10, 117, 153
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	7 cut(s)	41, 117, 149, 245, 257, 380, 498
BslI	CCNNNNNNNGG	6 cut(s)	116, 133, 155, 204, 361, 472
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	4 cut(s)	5, 194, 276, 398
Bsp1286I	GDGCHC	2 cut(s)	318, 505
Bsp143I	GATC	2 cut(s)	27, 123
BspACI	CCGC	2 cut(s)	37, 224
BspANI	GGCC	4 cut(s)	5, 194, 276, 398
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	2 cut(s)	22, 118
BspQI	GCTCTTC	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	325, 373
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	2 cut(s)	27, 123
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	11, 48, 336
Bst6I	CTCTTC	2 cut(s)	233, 482
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	462
BstHHI	GCGC	2 cut(s)	408, 478
BstKTI	GATC	2 cut(s)	30, 126
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	27, 123
BstMCI	CGRYCG	3 cut(s)	10, 117, 153
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 100, 266, 287, 385, 475
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	85
BstPAI	GACNNNNGTC	1 cut(s)	328
BstSCI	CCNGG	3 cut(s)	39, 60, 243
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	247, 397
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	2 cut(s)	27, 123
BstYI	RGATCY	2 cut(s)	27, 123
BsuRI	GGCC	4 cut(s)	5, 194, 276, 398
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	318, 332
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	83
CfoI	GCGC	2 cut(s)	408, 478
Cfr13I	GGNCC	1 cut(s)	107
CsiI	ACCWGGT	1 cut(s)	60
CviAII	CATG	4 cut(s)	82, 190, 286, 409
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	2 cut(s)	29, 125
DpnII	GATC	2 cut(s)	27, 123
EaeI	YGGCCR	3 cut(s)	3, 192, 396
Eam1104I	CTCTTC	2 cut(s)	233, 482
EarI	CTCTTC	2 cut(s)	233, 482
EciI	GGCGGA	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	503
Eco147I	AGGCCT	1 cut(s)	276
Eco24I	GRGCYC	2 cut(s)	318, 505
Eco47I	GGWCC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	318, 505
FaeI	CATG	4 cut(s)	85, 193, 289, 412
FaiI	YATR	6 cut(s)	83, 191, 287, 410, 419, 471
FatI	CATG	4 cut(s)	81, 189, 285, 408
Fnu4HI	GCNGC	2 cut(s)	261, 386
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	2 cut(s)	318, 505
Fsp4HI	GCNGC	2 cut(s)	261, 386
GlaI	GCGC	2 cut(s)	407, 477
GluI	GCNGC	2 cut(s)	261, 386
HaeIII	GGCC	4 cut(s)	5, 194, 276, 398
HapII	CCGG	7 cut(s)	41, 117, 149, 245, 257, 380, 498
HhaI	GCGC	2 cut(s)	408, 478
Hin1II	CATG	4 cut(s)	85, 193, 289, 412
Hin6I	GCGC	2 cut(s)	406, 476
HinP1I	GCGC	2 cut(s)	406, 476
HinfI	GANTC	4 cut(s)	139, 180, 324, 392
HpaII	CCGG	7 cut(s)	41, 117, 149, 245, 257, 380, 498
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	3 cut(s)	51, 458, 506
Hpy99I	CGWCG	1 cut(s)	363
HpyAV	CCTTC	2 cut(s)	155, 439
HpyCH4III	ACNGT	3 cut(s)	11, 48, 336
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 100, 266, 287, 385, 475
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	85, 193, 289, 412
HspAI	GCGC	2 cut(s)	406, 476
Kzo9I	GATC	2 cut(s)	27, 123
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	2 cut(s)	382, 500
Lsp1109I	GCAGC	2 cut(s)	247, 397
MabI	ACCWGGT	1 cut(s)	60
MaeIII	GTNAC	4 cut(s)	48, 136, 330, 343
MalI	GATC	2 cut(s)	29, 125
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	2 cut(s)	27, 123
MboII	GAAGA	4 cut(s)	220, 229, 451, 499
MflI	RGATCY	2 cut(s)	27, 123
MhlI	GDGCHC	2 cut(s)	318, 505
MlsI	TGGCCA	1 cut(s)	194
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	4 cut(s)	133, 174, 318, 386
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	6 cut(s)	24, 137, 365, 396, 442, 483
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	7 cut(s)	41, 117, 149, 245, 257, 380, 498
MspR9I	CCNGG	3 cut(s)	41, 62, 245
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	6 cut(s)	91, 100, 266, 287, 385, 475
NciI	CCSGG	2 cut(s)	41, 245
NdeII	GATC	2 cut(s)	27, 123
NlaIII	CATG	4 cut(s)	85, 193, 289, 412
NlaIV	GGNNCC	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	4 cut(s)	48, 136, 330, 343
NspI	RCATGY	1 cut(s)	85
PaeI	GCATGC	1 cut(s)	85
PceI	AGGCCT	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	233
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	262, 387
PleI	GAGTC	4 cut(s)	133, 174, 318, 386
PpsI	GAGTC	4 cut(s)	133, 174, 318, 386
PshAI	GACNNNNGTC	1 cut(s)	328
Psp124BI	GAGCTC	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	107
PsuI	RGATCY	2 cut(s)	27, 123
PsyI	GACNNNGTC	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	505
SapI	GCTCTTC	1 cut(s)	233
SatI	GCNGC	2 cut(s)	261, 386
Sau3AI	GATC	2 cut(s)	27, 123
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	4 cut(s)	133, 174, 318, 386
ScrFI	CCNGG	3 cut(s)	41, 62, 245
SduI	GDGCHC	2 cut(s)	318, 505
SetI	ASST	6 cut(s)	66, 90, 357, 390, 453, 505
SexAI	ACCWGGT	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SphI	GCATGC	1 cut(s)	85
SseBI	AGGCCT	1 cut(s)	276
SsiI	CCGC	2 cut(s)	37, 224
SstI	GAGCTC	1 cut(s)	505
StuI	AGGCCT	1 cut(s)	276
StyD4I	CCNGG	3 cut(s)	39, 60, 243
TaaI	ACNGT	3 cut(s)	11, 48, 336
TaqI	TCGA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	325, 339
TseFI	GTSAC	4 cut(s)	48, 136, 330, 343
TseI	GCWGC	2 cut(s)	260, 385
Tsp45I	GTSAC	4 cut(s)	48, 136, 330, 343
TspDTI	ATGAA	1 cut(s)	283
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	2 cut(s)	325, 339
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	107
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.