Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002040.1

Orthogroup ID

OG0004052

Physical Location & Seq

Genomic Coordinates Forward (+)

223371 .. 224039

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002040.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggcggatcagagaaagcaacatcagcagcaacaataccgcggtgttggcgatgatcagcagagccagcagtactacggcggtggcggtgatcagcagaatcagcagtaccagtactcctcggacgctaagagcctccttccccaacatggaccctccgcctcacaagtcattgcagtcataactcttgttcctctcggtgggaccctcctactgctcgccggcctcacactggccggaactttcattgggatggccctctcgacgccgctgtttgtgattttcagccctattttggtgccggctattgccaccatcggcttggctgtggccggcattttgacctcgggggctttcgggatcacggggctctcgtctttctcgtggttggccaactatctgagacgcacgcatctgccgcagcaggcaatccggggcgtgcaggagacttcgggccagttgacgcataaggctagggatctgggccgcactgtctccgaaaagacccaggaagctggccaagctgtccaggggaaggcccaagaagtggaccaggctgtgcagagcaaggccaatgtccaaagcaaggcccaagaagcaggacagaaggcccaggatactggaaggagtcacgaaggcggtagagctcgggatgtgaaggtgacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

222

Amino Acids

23.57

Weight (kDa)

9.39

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01570 AT3G27660 AT3G27660 AT5G40420
fragaria_vesca	FvH4_5g05960 FvH4_6g51310
malus_domestica	MD06G1169100.v1.1 MD09G1028000.v1.1 MD14G1174400.v1.1 MD17G1029500.v1.1
prunus_persica	Prupe.3G290700_v2.0.a1 Prupe.5G167900_v2.0.a1
pyrus_communis	pycom14g14550
rosa_chinensis	RchiOBHm_Chr2g0172931 RchiOBHm_Chr7g0192881
rosa_laevigata	RLG00000004316 RLG00000022143
rosa_multiflora	Rmu_sc0002040.1_g000052 Rmu_sc0029209.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079410 Rroxscaffold_3G00262590
rosa_rugosa	Rorug02G0563700 Rorug07G0005300
rosa_samantha	Rh2AG640500 Rh2BG654100 Rh2CG619600 Rh2DG667600 Rh7AG131000 Rh7BG131800 Rh7CG135100 Rh7DG132900
rosa_wichuraiana	Rw2G052870 Rw7G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	547
AccII	CGCG	1 cut(s)	42
AclWI	GGATC	3 cut(s)	15, 368, 486
AcoI	YGGCCR	4 cut(s)	234, 330, 390, 517
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	3 cut(s)	74, 110, 116
AfiI	CCNNNNNNNGG	7 cut(s)	149, 200, 232, 295, 535, 547, 586
AjnI	CCWGG	4 cut(s)	507, 528, 552, 612
AluBI	AGCT	3 cut(s)	515, 524, 647
AluI	AGCT	3 cut(s)	515, 524, 647
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	3 cut(s)	397, 440, 499
AlwI	GGATC	3 cut(s)	15, 368, 486
Ama87I	CYCGRG	2 cut(s)	346, 648
ApeKI	GCWGC	2 cut(s)	28, 421
AspS9I	GGNCC	9 cut(s)	152, 204, 256, 454, 484, 538, 550, 589, 610
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	2 cut(s)	346, 648
AvaII	GGWCC	3 cut(s)	152, 204, 550
BalI	TGGCCA	2 cut(s)	392, 519
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	2 cut(s)	372, 649
BauI	CACGAG	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	2 cut(s)	40, 433
BccI	CCATC	2 cut(s)	247, 323
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	4 cut(s)	509, 530, 554, 614
BciVI	GTATCC	1 cut(s)	610
BclI	TGATCA	2 cut(s)	55, 91
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	3 cut(s)	397, 440, 499
BfaI	CTAG	1 cut(s)	474
BfuI	GTATCC	1 cut(s)	610
BisI	GCNGC	5 cut(s)	29, 269, 419, 422, 487
BlsI	GCNGC	5 cut(s)	30, 270, 420, 423, 488
BmcAI	AGTACT	2 cut(s)	74, 116
Bme1390I	CCNGG	5 cut(s)	434, 509, 530, 554, 614
Bme18I	GGWCC	3 cut(s)	152, 204, 550
BmeT110I	CYCGRG	2 cut(s)	346, 648
BmgT120I	GGNCC	9 cut(s)	152, 204, 256, 454, 484, 538, 550, 589, 610
BmiI	GGNNCC	4 cut(s)	154, 205, 206, 300
BmrFI	CCNGG	5 cut(s)	434, 509, 530, 554, 614
BmsI	GCATC	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	266
BsaJI	CCNNGG	7 cut(s)	40, 120, 345, 433, 507, 529, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	7 cut(s)	149, 200, 232, 295, 535, 547, 586
Bse118I	RCCGGY	3 cut(s)	221, 301, 332
Bse1I	ACTGG	4 cut(s)	112, 237, 457, 625
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	4 cut(s)	509, 530, 554, 614
BseDI	CCNNGG	7 cut(s)	40, 120, 345, 433, 507, 529, 612
BseGI	GGATG	2 cut(s)	258, 658
BseLI	CCNNNNNNNGG	7 cut(s)	149, 200, 232, 295, 535, 547, 586
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	4 cut(s)	112, 237, 457, 625
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	40, 433
BsgI	GTGCAG	2 cut(s)	461, 581
Bsh1236I	CGCG	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	2 cut(s)	346, 648
BsiSI	CCGG	5 cut(s)	222, 237, 302, 333, 433
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	7 cut(s)	149, 200, 232, 295, 535, 547, 586
BsmAI	GTCTC	3 cut(s)	397, 440, 499
BsmBI	CGTCTC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	217
BsoBI	CYCGRG	2 cut(s)	346, 648
Bsp1286I	GDGCHC	2 cut(s)	372, 649
Bsp143I	GATC	5 cut(s)	7, 55, 91, 360, 478
BspCNI	CTCAG	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	4 cut(s)	154, 205, 206, 300
BspPI	GGATC	3 cut(s)	15, 368, 486
BspT107I	GGYRCC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	3 cut(s)	221, 301, 332
BsrI	ACTGG	4 cut(s)	112, 237, 457, 625
BssAI	RCCGGY	3 cut(s)	221, 301, 332
BssECI	CCNNGG	7 cut(s)	40, 120, 345, 433, 507, 529, 612
BssMI	GATC	5 cut(s)	7, 55, 91, 360, 478
BssNI	GRCGYC	1 cut(s)	266
BssSI	CACGAG	1 cut(s)	382
Bst2BI	CACGAG	1 cut(s)	382
Bst2UI	CCWGG	4 cut(s)	509, 530, 554, 614
Bst4CI	ACNGT	1 cut(s)	493
BstACI	GRCGYC	1 cut(s)	266
BstC8I	GCNNGC	9 cut(s)	68, 219, 223, 303, 334, 410, 426, 440, 517
BstDEI	CTNAG	2 cut(s)	129, 401
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	258, 658
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	5 cut(s)	10, 58, 94, 363, 481
BstMAI	GTCTC	3 cut(s)	397, 440, 499
BstMBI	GATC	5 cut(s)	7, 55, 91, 360, 478
BstMWI	GCNNNNNNNGC	7 cut(s)	25, 48, 67, 103, 418, 521, 596
BstNI	CCWGG	4 cut(s)	509, 530, 554, 614
BstSCI	CCNGG	5 cut(s)	432, 507, 528, 552, 612
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	40, 433
BstX2I	RGATCY	1 cut(s)	478
BstXI	CCANNNNNNTGG	3 cut(s)	322, 515, 620
BstYI	RGATCY	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	610
BtgI	CCRYGG	1 cut(s)	40
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	258, 658
BtsIMutI	CAGTG	2 cut(s)	230, 489
Cac8I	GCNNGC	9 cut(s)	68, 219, 223, 303, 334, 410, 426, 440, 517
Cfr10I	RCCGGY	3 cut(s)	221, 301, 332
Cfr13I	GGNCC	9 cut(s)	152, 204, 256, 454, 484, 538, 550, 589, 610
Cfr42I	CCGCGG	1 cut(s)	43
CseI	GACGC	4 cut(s)	134, 274, 414, 472
Csp6I	GTAC	3 cut(s)	73, 109, 115
CviAII	CATG	1 cut(s)	149
CviQI	GTAC	3 cut(s)	73, 109, 115
DdeI	CTNAG	2 cut(s)	129, 401
DpnI	GATC	5 cut(s)	9, 57, 93, 362, 480
DpnII	GATC	5 cut(s)	7, 55, 91, 360, 478
EaeI	YGGCCR	4 cut(s)	234, 330, 390, 517
EciI	GGCGGA	2 cut(s)	20, 148
Ecl136II	GAGCTC	1 cut(s)	647
Eco24I	GRGCYC	2 cut(s)	372, 649
Eco47I	GGWCC	3 cut(s)	152, 204, 550
Eco53kI	GAGCTC	1 cut(s)	647
Eco88I	CYCGRG	2 cut(s)	346, 648
EcoICRI	GAGCTC	1 cut(s)	647
EcoO109I	RGGNCCY	1 cut(s)	204
EcoRII	CCWGG	4 cut(s)	507, 528, 552, 612
EcoT38I	GRGCYC	2 cut(s)	372, 649
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	1 cut(s)	152
FaiI	YATR	4 cut(s)	150, 182, 468, 667
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	1 cut(s)	148
FbaI	TGATCA	2 cut(s)	55, 91
Fnu4HI	GCNGC	5 cut(s)	29, 269, 419, 422, 487
FokI	GGATG	2 cut(s)	265, 665
FriOI	GRGCYC	2 cut(s)	372, 649
Fsp4HI	GCNGC	5 cut(s)	29, 269, 419, 422, 487
FspBI	CTAG	1 cut(s)	474
GluI	GCNGC	5 cut(s)	29, 269, 419, 422, 487
HapII	CCGG	5 cut(s)	222, 237, 302, 333, 433
HgaI	GACGC	4 cut(s)	134, 274, 414, 472
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	2 cut(s)	100, 628
HpaII	CCGG	5 cut(s)	222, 237, 302, 333, 433
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	2 cut(s)	462, 550
Hpy188I	TCNGA	4 cut(s)	12, 124, 402, 499
Hpy188III	TCNNGA	4 cut(s)	262, 358, 632, 650
Hpy8I	GTNNAC	2 cut(s)	462, 550
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	6 cut(s)	149, 529, 601, 618, 629, 652
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4V	TGCA	3 cut(s)	176, 442, 562
HpyF10VI	GCNNNNNNNGC	7 cut(s)	25, 48, 67, 103, 418, 521, 596
HpyF3I	CTNAG	2 cut(s)	129, 401
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	152
KflI	GGGWCCC	1 cut(s)	204
KroI	GCCGGC	3 cut(s)	221, 301, 332
KroNI	GCCGGC	3 cut(s)	223, 303, 334
Ksp22I	TGATCA	2 cut(s)	55, 91
KspI	CCGCGG	1 cut(s)	43
Kzo9I	GATC	5 cut(s)	7, 55, 91, 360, 478
Lsp1109I	GCAGC	2 cut(s)	40, 433
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	474
MaeIII	GTNAC	2 cut(s)	629, 661
MalI	GATC	5 cut(s)	9, 57, 93, 362, 480
MboI	GATC	5 cut(s)	7, 55, 91, 360, 478
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	2 cut(s)	372, 649
MlsI	TGGCCA	2 cut(s)	392, 519
MluNI	TGGCCA	2 cut(s)	392, 519
MlyI	GAGTC	1 cut(s)	637
MnlI	CCTC	9 cut(s)	130, 146, 166, 172, 204, 218, 236, 269, 355
Mox20I	TGGCCA	2 cut(s)	392, 519
MroNI	GCCGGC	3 cut(s)	221, 301, 332
MscI	TGGCCA	2 cut(s)	392, 519
MslI	CAYNNNNRTG	1 cut(s)	251
Msp20I	TGGCCA	2 cut(s)	392, 519
MspA1I	CMGCKG	2 cut(s)	42, 271
MspI	CCGG	5 cut(s)	222, 237, 302, 333, 433
MspR9I	CCNGG	5 cut(s)	434, 509, 530, 554, 614
MvaI	CCWGG	4 cut(s)	509, 530, 554, 614
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	7 cut(s)	25, 48, 67, 103, 418, 521, 596
NaeI	GCCGGC	3 cut(s)	223, 303, 334
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	5 cut(s)	7, 55, 91, 360, 478
NgoMIV	GCCGGC	3 cut(s)	221, 301, 332
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	4 cut(s)	154, 205, 206, 300
NmuCI	GTSAC	2 cut(s)	629, 661
PcsI	WCGNNNNNNNCGW	2 cut(s)	371, 380
PdiI	GCCGGC	3 cut(s)	223, 303, 334
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	5 cut(s)	30, 270, 420, 423, 488
PleI	GAGTC	1 cut(s)	636
PpsI	GAGTC	1 cut(s)	636
PpuMI	RGGWCCY	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	649
Psp5II	RGGWCCY	1 cut(s)	204
Psp6I	CCWGG	4 cut(s)	507, 528, 552, 612
PspGI	CCWGG	4 cut(s)	507, 528, 552, 612
PspN4I	GGNNCC	4 cut(s)	154, 205, 206, 300
PspPI	GGNCC	9 cut(s)	152, 204, 256, 454, 484, 538, 550, 589, 610
PspPPI	RGGWCCY	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	478
RsaI	GTAC	3 cut(s)	74, 110, 116
RsaNI	GTAC	3 cut(s)	73, 109, 115
RseI	CAYNNNNRTG	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	649
SacII	CCGCGG	1 cut(s)	43
SatI	GCNGC	5 cut(s)	29, 269, 419, 422, 487
Sau3AI	GATC	5 cut(s)	7, 55, 91, 360, 478
Sau96I	GGNCC	9 cut(s)	152, 204, 256, 454, 484, 538, 550, 589, 610
ScaI	AGTACT	2 cut(s)	74, 116
SchI	GAGTC	1 cut(s)	637
ScrFI	CCNGG	5 cut(s)	434, 509, 530, 554, 614
SduI	GDGCHC	2 cut(s)	372, 649
SetI	ASST	5 cut(s)	347, 517, 526, 649, 663
SfaNI	GCATC	1 cut(s)	421
Sfr303I	CCGCGG	1 cut(s)	43
SgrBI	CCGCGG	1 cut(s)	43
SinI	GGWCC	3 cut(s)	152, 204, 550
SmiMI	CAYNNNNRTG	1 cut(s)	251
SspMI	CTAG	1 cut(s)	474
SstI	GAGCTC	1 cut(s)	649
StyD4I	CCNGG	5 cut(s)	432, 507, 528, 552, 612
TaaI	ACNGT	1 cut(s)	493
TaqI	TCGA	1 cut(s)	263
TatI	WGTACW	2 cut(s)	72, 114
TauI	GCSGC	3 cut(s)	271, 421, 489
TfiI	GAWTC	1 cut(s)	100
TscAI	CASTG	2 cut(s)	237, 496
TseFI	GTSAC	2 cut(s)	629, 661
TseI	GCWGC	2 cut(s)	28, 421
Tsp45I	GTSAC	2 cut(s)	629, 661
TspDTI	ATGAA	1 cut(s)	235
TspRI	CASTG	2 cut(s)	237, 496
Van91I	CCANNNNNTGG	1 cut(s)	547
VpaK11BI	GGWCC	3 cut(s)	152, 204, 550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XspI	CTAG	1 cut(s)	474
ZrmI	AGTACT	2 cut(s)	74, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.