Rroxscaffold_3G00262590

Oleosin 16.4 kDa-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004052
Physical Location & Seq
Reverse (-)
56585684 .. 56586355
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262590.1

Sequence Viewer

Length: 672 bp
ATGGCGGATCAGAGAAAGCAACAATACCGCGGTGTTGGCGATGATCAGCAGAGCCAGCAGTACTACGGCGGTGGCGGTGATCAGCAGAACCAGCAGTACCAGTACTCTTCGGACGCTAAGAGCCTCCTTCCCCAACATGGACCCTCCGCCTCACAAGTCATTGCAGTCATAACTCTTGTTCCTCTCGGTGGGACCCTCCTACTGCTCGCGGGCCTCACACTGGCCGGAACTTTCATTGGGATGGCCCTCTCGACCCCGCTGTTTGTGATTTTCAGCCCGATTTTGGTGCCGGCTATTGCCACAGTCGGCTTGGCGGTGGCCGGCATTTTGACCTCGGGGGCTTTCGGGATCACGGGGCTCTCATCTTTCTCGTGGTTGGCCAACTATCTGAGACGCACGCATCTGCCGCAGCAGGCAATCCGGGGTGTGCAGGAGACTTCAGGACGGTTGACGCATAAGGCTAGGGATCTGGGCCAGACTGTCTCTGAAAAGACCCAGGAAGCTGGCCAAGCTGTCCAGGGGAAGGCCCAAGAAGTGGACCTGGCTGTGCAGAGCAAGGCCCAAGAAGAGGGTCAGAATGTCCAAAGCAAGGCCCAAGAAGCAGGACAGAAGGCCCAGGATACTGGAAGGAGTCACGAAGGCGGTAGAGCTCGGGATGTGAAGGTGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

223

Amino Acids

23.59

Weight (kDa)

8.86

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 51 - 163 1.8e-36 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 286
AccB7I CCANNNNNTGG 1 cut(s) 535
AccII CGCG 2 cut(s) 30, 209
AclWI GGATC 3 cut(s) 15, 356, 474
AcoI YGGCCR 4 cut(s) 222, 318, 378, 505
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 3 cut(s) 62, 98, 104
AfiI CCNNNNNNNGG 8 cut(s) 137, 188, 220, 283, 523, 535, 568, 589
AjnI CCWGG 4 cut(s) 495, 516, 540, 615
AluBI AGCT 3 cut(s) 503, 512, 650
AluI AGCT 3 cut(s) 503, 512, 650
Alw21I GWGCWC 1 cut(s) 652
Alw26I GTCTC 3 cut(s) 385, 428, 487
AlwI GGATC 3 cut(s) 15, 356, 474
Ama87I CYCGRG 2 cut(s) 334, 651
ApeKI GCWGC 1 cut(s) 409
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 1 cut(s) 89
AvaI CYCGRG 2 cut(s) 334, 651
AvaII GGWCC 3 cut(s) 140, 192, 538
BalI TGGCCA 2 cut(s) 380, 507
BanI GGYRCC 1 cut(s) 286
BanII GRGCYC 2 cut(s) 360, 652
BauI CACGAG 1 cut(s) 370
Bbv12I GWGCWC 1 cut(s) 652
BbvI GCAGC 1 cut(s) 421
BccI CCATC 1 cut(s) 235
BceAI ACGGC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 4 cut(s) 497, 518, 542, 617
BciVI GTATCC 1 cut(s) 613
BclI TGATCA 2 cut(s) 43, 79
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 3 cut(s) 385, 428, 487
BfaI CTAG 1 cut(s) 462
BfuI GTATCC 1 cut(s) 613
BisI GCNGC 2 cut(s) 407, 410
BlsI GCNGC 2 cut(s) 408, 411
BmcAI AGTACT 2 cut(s) 62, 104
Bme1390I CCNGG 5 cut(s) 422, 497, 518, 542, 617
Bme18I GGWCC 3 cut(s) 140, 192, 538
BmeT110I CYCGRG 2 cut(s) 334, 651
BmiI GGNNCC 4 cut(s) 142, 193, 194, 288
BmrFI CCNGG 5 cut(s) 422, 497, 518, 542, 617
BmsI GCATC 1 cut(s) 409
BpuMI CCSGG 1 cut(s) 422
BsaJI CCNNGG 6 cut(s) 28, 333, 421, 495, 517, 615
Bsc4I CCNNNNNNNGG 8 cut(s) 137, 188, 220, 283, 523, 535, 568, 589
Bse118I RCCGGY 2 cut(s) 289, 320
Bse1I ACTGG 3 cut(s) 100, 225, 628
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 4 cut(s) 497, 518, 542, 617
BseDI CCNNGG 6 cut(s) 28, 333, 421, 495, 517, 615
BseGI GGATG 2 cut(s) 246, 661
BseLI CCNNNNNNNGG 8 cut(s) 137, 188, 220, 283, 523, 535, 568, 589
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 3 cut(s) 100, 225, 628
BseXI GCAGC 1 cut(s) 421
BsgI GTGCAG 2 cut(s) 449, 569
Bsh1236I CGCG 2 cut(s) 30, 209
BshNI GGYRCC 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 652
BsiHKCI CYCGRG 2 cut(s) 334, 651
BsiSI CCGG 4 cut(s) 225, 290, 321, 421
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 8 cut(s) 137, 188, 220, 283, 523, 535, 568, 589
BsmAI GTCTC 3 cut(s) 385, 428, 487
BsmBI CGTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 205
BsoBI CYCGRG 2 cut(s) 334, 651
Bsp1286I GDGCHC 2 cut(s) 360, 652
Bsp143I GATC 5 cut(s) 7, 43, 79, 348, 466
BspCNI CTCAG 1 cut(s) 381
BspFNI CGCG 2 cut(s) 30, 209
BspLI GGNNCC 4 cut(s) 142, 193, 194, 288
BspPI GGATC 3 cut(s) 15, 356, 474
BspT107I GGYRCC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 159
BsrFI RCCGGY 2 cut(s) 289, 320
BsrI ACTGG 3 cut(s) 100, 225, 628
BssAI RCCGGY 2 cut(s) 289, 320
BssECI CCNNGG 6 cut(s) 28, 333, 421, 495, 517, 615
BssMI GATC 5 cut(s) 7, 43, 79, 348, 466
BssSI CACGAG 1 cut(s) 370
Bst2BI CACGAG 1 cut(s) 370
Bst2UI CCWGG 4 cut(s) 497, 518, 542, 617
Bst4CI ACNGT 3 cut(s) 304, 447, 481
Bst6I CTCTTC 2 cut(s) 112, 561
BstC8I GCNNGC 8 cut(s) 56, 207, 211, 291, 322, 398, 414, 505
BstDEI CTNAG 2 cut(s) 117, 389
BstDSI CCRYGG 1 cut(s) 28
BstF5I GGATG 2 cut(s) 246, 661
BstFNI CGCG 2 cut(s) 30, 209
BstKTI GATC 5 cut(s) 10, 46, 82, 351, 469
BstMAI GTCTC 3 cut(s) 385, 428, 487
BstMBI GATC 5 cut(s) 7, 43, 79, 348, 466
BstMWI GCNNNNNNNGC 6 cut(s) 36, 55, 91, 406, 509, 599
BstNI CCWGG 4 cut(s) 497, 518, 542, 617
BstSCI CCNGG 5 cut(s) 420, 495, 516, 540, 615
BstUI CGCG 2 cut(s) 30, 209
BstV1I GCAGC 1 cut(s) 421
BstX2I RGATCY 1 cut(s) 466
BstXI CCANNNNNNTGG 2 cut(s) 503, 623
BstYI RGATCY 1 cut(s) 466
BsuI GTATCC 1 cut(s) 613
BtgI CCRYGG 1 cut(s) 28
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 246, 661
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 8 cut(s) 56, 207, 211, 291, 322, 398, 414, 505
Cfr10I RCCGGY 2 cut(s) 289, 320
Cfr42I CCGCGG 1 cut(s) 31
CseI GACGC 3 cut(s) 122, 402, 460
Csp6I GTAC 3 cut(s) 61, 97, 103
CviAII CATG 1 cut(s) 137
CviQI GTAC 3 cut(s) 61, 97, 103
DdeI CTNAG 2 cut(s) 117, 389
DpnI GATC 5 cut(s) 9, 45, 81, 350, 468
DpnII GATC 5 cut(s) 7, 43, 79, 348, 466
EaeI YGGCCR 4 cut(s) 222, 318, 378, 505
Eam1104I CTCTTC 2 cut(s) 112, 561
EarI CTCTTC 2 cut(s) 112, 561
EciI GGCGGA 2 cut(s) 20, 136
Ecl136II GAGCTC 1 cut(s) 650
Eco24I GRGCYC 2 cut(s) 360, 652
Eco47I GGWCC 3 cut(s) 140, 192, 538
Eco53kI GAGCTC 1 cut(s) 650
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 2 cut(s) 334, 651
EcoICRI GAGCTC 1 cut(s) 650
EcoO109I RGGNCCY 1 cut(s) 192
EcoRII CCWGG 4 cut(s) 495, 516, 540, 615
EcoT38I GRGCYC 2 cut(s) 360, 652
Esp3I CGTCTC 1 cut(s) 385
FaeI CATG 1 cut(s) 140
FaiI YATR 4 cut(s) 138, 170, 456, 670
FaqI GGGAC 1 cut(s) 205
FatI CATG 1 cut(s) 136
FauI CCCGC 2 cut(s) 202, 264
FbaI TGATCA 2 cut(s) 43, 79
Fnu4HI GCNGC 2 cut(s) 407, 410
FokI GGATG 2 cut(s) 253, 668
FriOI GRGCYC 2 cut(s) 360, 652
Fsp4HI GCNGC 2 cut(s) 407, 410
FspBI CTAG 1 cut(s) 462
GluI GCNGC 2 cut(s) 407, 410
HapII CCGG 4 cut(s) 225, 290, 321, 421
HgaI GACGC 3 cut(s) 122, 402, 460
Hin1II CATG 1 cut(s) 140
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 1 cut(s) 631
HpaII CCGG 4 cut(s) 225, 290, 321, 421
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 450, 538
Hpy188I TCNGA 5 cut(s) 12, 112, 390, 487, 576
Hpy188III TCNNGA 5 cut(s) 250, 346, 441, 635, 653
Hpy8I GTNNAC 2 cut(s) 450, 538
HpyAV CCTTC 6 cut(s) 137, 517, 604, 621, 632, 655
HpyCH4III ACNGT 3 cut(s) 304, 447, 481
HpyCH4V TGCA 3 cut(s) 164, 430, 550
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 55, 91, 406, 509, 599
HpyF3I CTNAG 2 cut(s) 117, 389
Hsp92II CATG 1 cut(s) 140
KflI GGGWCCC 1 cut(s) 192
KroI GCCGGC 2 cut(s) 289, 320
KroNI GCCGGC 2 cut(s) 291, 322
Ksp22I TGATCA 2 cut(s) 43, 79
KspI CCGCGG 1 cut(s) 31
Kzo9I GATC 5 cut(s) 7, 43, 79, 348, 466
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 1 cut(s) 409
MaeI CTAG 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 632, 664
MalI GATC 5 cut(s) 9, 45, 81, 350, 468
MboI GATC 5 cut(s) 7, 43, 79, 348, 466
MboII GAAGA 2 cut(s) 99, 578
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 2 cut(s) 360, 652
MlsI TGGCCA 2 cut(s) 380, 507
MluNI TGGCCA 2 cut(s) 380, 507
MlyI GAGTC 1 cut(s) 640
MnlI CCTC 9 cut(s) 134, 154, 160, 192, 206, 224, 257, 343, 562
Mox20I TGGCCA 2 cut(s) 380, 507
MroNI GCCGGC 2 cut(s) 289, 320
MscI TGGCCA 2 cut(s) 380, 507
MslI CAYNNNNRTG 1 cut(s) 239
Msp20I TGGCCA 2 cut(s) 380, 507
MspA1I CMGCKG 2 cut(s) 30, 259
MspI CCGG 4 cut(s) 225, 290, 321, 421
MspR9I CCNGG 5 cut(s) 422, 497, 518, 542, 617
MvaI CCWGG 4 cut(s) 497, 518, 542, 617
MvnI CGCG 2 cut(s) 30, 209
MwoI GCNNNNNNNGC 6 cut(s) 36, 55, 91, 406, 509, 599
NaeI GCCGGC 2 cut(s) 291, 322
NciI CCSGG 1 cut(s) 422
NdeII GATC 5 cut(s) 7, 43, 79, 348, 466
NgoMIV GCCGGC 2 cut(s) 289, 320
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 4 cut(s) 142, 193, 194, 288
NmuCI GTSAC 2 cut(s) 632, 664
PdiI GCCGGC 2 cut(s) 291, 322
PflMI CCANNNNNTGG 1 cut(s) 535
PkrI GCNGC 2 cut(s) 408, 411
PleI GAGTC 1 cut(s) 639
PpsI GAGTC 1 cut(s) 639
PpuMI RGGWCCY 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 652
Psp5II RGGWCCY 1 cut(s) 192
Psp6I CCWGG 4 cut(s) 495, 516, 540, 615
PspGI CCWGG 4 cut(s) 495, 516, 540, 615
PspN4I GGNNCC 4 cut(s) 142, 193, 194, 288
PspPPI RGGWCCY 1 cut(s) 192
PsrI GAACNNNNNNTAC 2 cut(s) 80, 112
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 3 cut(s) 62, 98, 104
RsaNI GTAC 3 cut(s) 61, 97, 103
RseI CAYNNNNRTG 1 cut(s) 239
SacI GAGCTC 1 cut(s) 652
SacII CCGCGG 1 cut(s) 31
SatI GCNGC 2 cut(s) 407, 410
Sau3AI GATC 5 cut(s) 7, 43, 79, 348, 466
ScaI AGTACT 2 cut(s) 62, 104
SchI GAGTC 1 cut(s) 640
ScrFI CCNGG 5 cut(s) 422, 497, 518, 542, 617
SduI GDGCHC 2 cut(s) 360, 652
SetI ASST 6 cut(s) 335, 505, 514, 543, 652, 666
SfaNI GCATC 1 cut(s) 409
Sfr303I CCGCGG 1 cut(s) 31
SgrBI CCGCGG 1 cut(s) 31
SinI GGWCC 3 cut(s) 140, 192, 538
SmiMI CAYNNNNRTG 1 cut(s) 239
SspMI CTAG 1 cut(s) 462
SstI GAGCTC 1 cut(s) 652
StyD4I CCNGG 5 cut(s) 420, 495, 516, 540, 615
TaaI ACNGT 3 cut(s) 304, 447, 481
TaqI TCGA 1 cut(s) 251
TatI WGTACW 2 cut(s) 60, 102
TauI GCSGC 1 cut(s) 409
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 2 cut(s) 632, 664
TseI GCWGC 1 cut(s) 409
Tsp45I GTSAC 2 cut(s) 632, 664
TspDTI ATGAA 1 cut(s) 223
TspRI CASTG 1 cut(s) 225
Van91I CCANNNNNTGG 1 cut(s) 535
VpaK11BI GGWCC 3 cut(s) 140, 192, 538
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XspI CTAG 1 cut(s) 462
ZrmI AGTACT 2 cut(s) 62, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.