Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004052

Physical Location & Seq

Genomic Coordinates Forward (+)

1736574 .. 1737107

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1028000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCAGACCGTCCTCAGCCACACCATATCCAAGTTCGCCCCGCCCAGCCGCGCTACGGCGAGCACGAGTACGGTGAACATGGTGGCCGCTTTGGAGGCATAAAGGGGCAACAACAAAGCGATGGCCCCTCGACCGGGCAAGTTATTGCAGTGATAACCGGCCTTCCAGTCGGTGGAACCCTACTGGGGCTTGCTGGTCTCACTTTCATGGGGACCATCATTGGTGCTCTCCTTGCCACCCCGCTCTTCATCATCTTCAGCCCGGTTCTTGTCCCTGCTCTCTTCGTCATCGGGCTTGCTGTCACCGGATTTCTGACCTCCGGGGCTTTCGGGCTGACCGGGCTGTCGTCGCTGTCGTGGATCGCCAACTACCTCAGGAGGTCATCGGTGGTGCCTGAGGCCCTGGACGAGGCGAAGAGGCGCGCTGCGGAAATGGGGGAGTACGTGGGGCAGAAGACCAAGGAGGTTGGCCAGGACATCCAGAGTAAGTCCCATGAAACAAAGAGGCAATCCGGACATACTGAAAGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0010154 GO:0010344 GO:0010876 GO:0012511 GO:0016020 GO:0019915 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050826 GO:0050896 GO:0051179 GO:0051235 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090351 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

178

Amino Acids

18.81

Weight (kDa)

9.05

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oleosin	PF01277	47 - 157	5.1e-40	Oleosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01570 AT3G27660 AT3G27660 AT5G40420
fragaria_vesca	FvH4_5g05960 FvH4_6g51310
malus_domestica	MD06G1169100.v1.1 MD09G1028000.v1.1 MD14G1174400.v1.1 MD17G1029500.v1.1
prunus_persica	Prupe.3G290700_v2.0.a1 Prupe.5G167900_v2.0.a1
pyrus_communis	pycom14g14550
rosa_chinensis	RchiOBHm_Chr2g0172931 RchiOBHm_Chr7g0192881
rosa_laevigata	RLG00000004316 RLG00000022143
rosa_multiflora	Rmu_sc0002040.1_g000052 Rmu_sc0029209.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079410 Rroxscaffold_3G00262590
rosa_rugosa	Rorug02G0563700 Rorug07G0005300
rosa_samantha	Rh2AG640500 Rh2BG654100 Rh2CG619600 Rh2DG667600 Rh7AG131000 Rh7BG131800 Rh7CG135100 Rh7DG132900
rosa_wichuraiana	Rw2G052870 Rw7G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	343
AccB1I	GGYRCC	1 cut(s)	391
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	244
AccII	CGCG	2 cut(s)	52, 423
AccIII	TCCGGA	1 cut(s)	512
AciI	CCGC	5 cut(s)	42, 50, 88, 242, 428
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	2 cut(s)	85, 469
AcuI	CTGAAG	1 cut(s)	241
AfaI	GTAC	2 cut(s)	71, 443
AfiI	CCNNNNNNNGG	6 cut(s)	56, 134, 135, 173, 186, 409
AjnI	CCWGG	2 cut(s)	402, 471
Alw21I	GWGCWC	2 cut(s)	66, 229
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	368
Aor13HI	TCCGGA	1 cut(s)	512
AoxI	GGCC	5 cut(s)	85, 124, 160, 399, 469
ApeKI	GCWGC	1 cut(s)	425
AspLEI	GCGC	3 cut(s)	54, 423, 425
AspS9I	GGNCC	3 cut(s)	125, 213, 400
AsuC2I	CCSGG	4 cut(s)	136, 263, 322, 340
AsuHPI	GGTGA	2 cut(s)	86, 295
AvaII	GGWCC	1 cut(s)	213
AxyI	CCTNAGG	2 cut(s)	374, 396
BalI	TGGCCA	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	391
BauI	CACGAG	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	2 cut(s)	66, 229
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	2 cut(s)	116, 224
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	404, 473
BcnI	CCSGG	4 cut(s)	136, 263, 322, 340
BcoDI	GTCTC	1 cut(s)	203
BisI	GCNGC	3 cut(s)	50, 88, 426
BlsI	GCNGC	3 cut(s)	51, 89, 427
Bme1390I	CCNGG	6 cut(s)	136, 263, 322, 340, 404, 473
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	3 cut(s)	125, 213, 400
BmiI	GGNNCC	4 cut(s)	127, 178, 214, 393
BmrFI	CCNGG	6 cut(s)	136, 263, 322, 340, 404, 473
BmrI	ACTGGG	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	461
Bpu10I	CCTNAGC	1 cut(s)	15
BpuMI	CCSGG	4 cut(s)	136, 263, 322, 340
BsaAI	YACGTR	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	321, 402, 459
BsaWI	WCCGGW	2 cut(s)	305, 512
Bsc4I	CCNNNNNNNGG	6 cut(s)	56, 134, 135, 173, 186, 409
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	2 cut(s)	167, 189
Bse21I	CCTNAGG	2 cut(s)	374, 396
BseAI	TCCGGA	1 cut(s)	512
BseBI	CCWGG	2 cut(s)	404, 473
BseDI	CCNNGG	3 cut(s)	321, 402, 459
BseGI	GGATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	6 cut(s)	56, 134, 135, 173, 186, 409
BseMII	CTCAG	3 cut(s)	29, 387, 388
BseNI	ACTGG	2 cut(s)	167, 189
BsePI	GCGCGC	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	412
BseYI	CCCAGC	1 cut(s)	45
Bsh1236I	CGCG	2 cut(s)	52, 423
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	5 cut(s)	87, 126, 162, 401, 471
BshNI	GGYRCC	1 cut(s)	391
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	66, 229
BsiSI	CCGG	7 cut(s)	135, 159, 263, 306, 321, 339, 513
BslFI	GGGAC	3 cut(s)	226, 257, 475
BslI	CCNNNNNNNGG	6 cut(s)	56, 134, 135, 173, 186, 409
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	3 cut(s)	226, 257, 475
BsnI	GGCC	5 cut(s)	87, 126, 162, 401, 471
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	66, 229
Bsp13I	TCCGGA	1 cut(s)	512
Bsp143I	GATC	1 cut(s)	360
BspACI	CCGC	5 cut(s)	42, 50, 88, 242, 428
BspANI	GGCC	5 cut(s)	87, 126, 162, 401, 471
BspCNI	CTCAG	3 cut(s)	28, 387, 388
BspEI	TCCGGA	1 cut(s)	512
BspFNI	CGCG	2 cut(s)	52, 423
BspLI	GGNNCC	4 cut(s)	127, 178, 214, 393
BspPI	GGATC	1 cut(s)	368
BspQI	GCTCTTC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	167, 189
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	321, 402, 459
BssHII	GCGCGC	1 cut(s)	421
BssMI	GATC	1 cut(s)	360
BssSI	CACGAG	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	65
Bst2UI	CCWGG	2 cut(s)	404, 473
Bst4CI	ACNGT	2 cut(s)	11, 74
Bst6I	CTCTTC	3 cut(s)	251, 287, 410
BstBAI	YACGTR	1 cut(s)	445
BstC8I	GCNNGC	4 cut(s)	62, 192, 297, 423
BstDEI	CTNAG	3 cut(s)	15, 374, 396
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	477
BstFNI	CGCG	2 cut(s)	52, 423
BstHHI	GCGC	3 cut(s)	54, 423, 425
BstKTI	GATC	1 cut(s)	363
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	360
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 233, 340, 349
BstNI	CCWGG	2 cut(s)	404, 473
BstSCI	CCNGG	6 cut(s)	134, 261, 320, 338, 402, 471
BstUI	CGCG	2 cut(s)	52, 423
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	461
Bsu36I	CCTNAGG	2 cut(s)	374, 396
BsuRI	GGCC	5 cut(s)	87, 126, 162, 401, 471
BtgZI	GCGATG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	477
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	4 cut(s)	62, 192, 297, 423
CfoI	GCGC	3 cut(s)	54, 423, 425
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	125, 213, 400
Csp6I	GTAC	2 cut(s)	70, 442
CviAII	CATG	3 cut(s)	80, 208, 494
CviQI	GTAC	2 cut(s)	70, 442
DdeI	CTNAG	3 cut(s)	15, 374, 396
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
DrdI	GACNNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	2 cut(s)	85, 469
Eam1104I	CTCTTC	3 cut(s)	251, 287, 410
EarI	CTCTTC	3 cut(s)	251, 287, 410
Eco130I	CCWWGG	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	241
Eco81I	CCTNAGG	2 cut(s)	374, 396
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	402, 471
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	3 cut(s)	83, 211, 497
FaiI	YATR	6 cut(s)	27, 81, 101, 209, 495, 519
FaqI	GGGAC	3 cut(s)	226, 257, 475
FatI	CATG	3 cut(s)	79, 207, 493
FauI	CCCGC	2 cut(s)	49, 249
Fnu4HI	GCNGC	3 cut(s)	50, 88, 426
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	50, 88, 426
GlaI	GCGC	3 cut(s)	53, 422, 424
GluI	GCNGC	3 cut(s)	50, 88, 426
GsaI	CCCAGC	1 cut(s)	49
HaeIII	GGCC	5 cut(s)	87, 126, 162, 401, 471
HapII	CCGG	7 cut(s)	135, 159, 263, 306, 321, 339, 513
HhaI	GCGC	3 cut(s)	54, 423, 425
Hin1II	CATG	3 cut(s)	83, 211, 497
Hin6I	GCGC	3 cut(s)	52, 421, 423
HinP1I	GCGC	3 cut(s)	52, 421, 423
HpaII	CCGG	7 cut(s)	135, 159, 263, 306, 321, 339, 513
HphI	GGTGA	2 cut(s)	86, 295
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	3 cut(s)	376, 481, 513
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	11, 74
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 233, 340, 349
HpyF3I	CTNAG	3 cut(s)	15, 374, 396
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	83, 211, 497
HspAI	GCGC	3 cut(s)	52, 421, 423
Kpn2I	TCCGGA	1 cut(s)	512
Kzo9I	GATC	1 cut(s)	360
LguI	GCTCTTC	1 cut(s)	251
Lsp1109I	GCAGC	1 cut(s)	412
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	1 cut(s)	362
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	1 cut(s)	360
MboII	GAAGA	5 cut(s)	238, 247, 274, 427, 466
MhlI	GDGCHC	2 cut(s)	66, 229
MlsI	TGGCCA	1 cut(s)	471
MluNI	TGGCCA	1 cut(s)	471
Mox20I	TGGCCA	1 cut(s)	471
MroI	TCCGGA	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	471
MspI	CCGG	7 cut(s)	135, 159, 263, 306, 321, 339, 513
MspR9I	CCNGG	6 cut(s)	136, 263, 322, 340, 404, 473
MvaI	CCWGG	2 cut(s)	404, 473
MvnI	CGCG	2 cut(s)	52, 423
MwoI	GCNNNNNNNGC	4 cut(s)	96, 233, 340, 349
NciI	CCSGG	4 cut(s)	136, 263, 322, 340
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	3 cut(s)	83, 211, 497
NlaIV	GGNNCC	4 cut(s)	127, 178, 214, 393
NmuCI	GTSAC	1 cut(s)	301
PauI	GCGCGC	1 cut(s)	421
PciSI	GCTCTTC	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 353
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	3 cut(s)	51, 89, 427
Ppu21I	YACGTR	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	402, 471
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	2 cut(s)	402, 471
PspN4I	GGNNCC	4 cut(s)	127, 178, 214, 393
PspPI	GGNCC	3 cut(s)	125, 213, 400
PteI	GCGCGC	1 cut(s)	421
RsaI	GTAC	2 cut(s)	71, 443
RsaNI	GTAC	2 cut(s)	70, 442
RseI	CAYNNNNRTG	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	251
SatI	GCNGC	3 cut(s)	50, 88, 426
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	3 cut(s)	125, 213, 400
ScrFI	CCNGG	6 cut(s)	136, 263, 322, 340, 404, 473
SduI	GDGCHC	2 cut(s)	66, 229
SetI	ASST	5 cut(s)	320, 375, 383, 447, 468
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	206
SsiI	CCGC	5 cut(s)	42, 50, 88, 242, 428
StyD4I	CCNGG	6 cut(s)	134, 261, 320, 338, 402, 471
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	11, 74
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	131
TauI	GCSGC	2 cut(s)	52, 90
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	196, 238, 510
TspRI	CASTG	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	213
XagI	CCTNNNNNAGG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.