Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004052

Physical Location & Seq

Genomic Coordinates Forward (+)

10243244 .. 10245023

Gene Structure 1780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGAATGTGGATCGTGATCGGCGTGTGCATGTAGACCGTACTGACAAACGTGTTCATCAGCCAAACTACGAAGATGATGTCGGTTTTGGTGGCTATGGCGGTTATGGTGCTGGTTCTGATTATAAGAGTCGCGGCCCCTCCACTAACCAAATCTTGGCACTTATAGCAGGAGTTCCCATTGGTGGCACACTGCTAACCCTAGCTGGACTCACTCTAGCCGGTTCGGTGATCGGCTTGCTAGTCTCCATACCCCTCTTCCTCCTCTTCAGTCCGGTGATAGTCCCGGCGGCTCTCACTATTGGGCTTGCTGTGACGGGAATCTTGGCTTCTGGTTTGTTTGGGTTGACGGGTCTGAGCTCGGTCTCGTGGGTCCTCAACTACCTCCGTGGGACGAGTGATACAGTGCCAGAGCAATTGGACTACGCTAAACGGCGTATGGCTGATGCGGTAGGCTATGCTGGTATGAAGGGAAAAGAGATGGGTCAGTATGTGCAAGATAAGGCTCATGAGGCTCGTGAGACTGAGTTCATGACTGAGACCCATGAGCCGGGTAAGGCCAGGAGAGGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0010154 GO:0010344 GO:0010876 GO:0012511 GO:0016020 GO:0019915 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050826 GO:0050896 GO:0051179 GO:0051235 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090351 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

191

Amino Acids

20.31

Weight (kDa)

6.91

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oleosin	PF01277	50 - 162	9.9e-42	Oleosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01570 AT3G27660 AT3G27660 AT5G40420
fragaria_vesca	FvH4_5g05960 FvH4_6g51310
malus_domestica	MD06G1169100.v1.1 MD09G1028000.v1.1 MD14G1174400.v1.1 MD17G1029500.v1.1
prunus_persica	Prupe.3G290700_v2.0.a1 Prupe.5G167900_v2.0.a1
pyrus_communis	pycom14g14550
rosa_chinensis	RchiOBHm_Chr2g0172931 RchiOBHm_Chr7g0192881
rosa_laevigata	RLG00000004316 RLG00000022143
rosa_multiflora	Rmu_sc0002040.1_g000052 Rmu_sc0029209.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079410 Rroxscaffold_3G00262590
rosa_rugosa	Rorug02G0563700 Rorug07G0005300
rosa_samantha	Rh2AG640500 Rh2BG654100 Rh2CG619600 Rh2DG667600 Rh7AG131000 Rh7BG131800 Rh7CG135100 Rh7DG132900
rosa_wichuraiana	Rw2G052870 Rw7G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	1 cut(s)	135
AciI	CCGC	4 cut(s)	102, 135, 290, 449
AclWI	GGATC	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	253
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	3 cut(s)	157, 185, 550
AflIII	ACRYGT	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	560
AluBI	AGCT	2 cut(s)	206, 360
AluI	AGCT	2 cut(s)	206, 360
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	4 cut(s)	250, 370, 515, 533
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	2 cut(s)	136, 558
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspS9I	GGNCC	2 cut(s)	137, 373
AsuC2I	CCSGG	2 cut(s)	287, 552
AsuHPI	GGTGA	2 cut(s)	241, 289
AvaII	GGWCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	362
BauI	CACGAG	2 cut(s)	367, 516
Bbv12I	GWGCWC	1 cut(s)	362
BccI	CCATC	1 cut(s)	475
BceAI	ACGGC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	562
BcnI	CCSGG	2 cut(s)	287, 552
BcoDI	GTCTC	4 cut(s)	250, 370, 515, 533
BfaI	CTAG	3 cut(s)	203, 218, 242
BisI	GCNGC	2 cut(s)	136, 291
BlsI	GCNGC	2 cut(s)	137, 292
Bme1390I	CCNGG	3 cut(s)	287, 552, 562
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	137, 373
BmiI	GGNNCC	2 cut(s)	139, 374
BmrFI	CCNGG	3 cut(s)	287, 552, 562
BmsI	GCATC	1 cut(s)	436
BpuMI	CCSGG	2 cut(s)	287, 552
BsaBI	GATNNNNATC	1 cut(s)	18
BsaI	GGTCTC	2 cut(s)	370, 533
BsaJI	CCNNGG	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 185, 550
Bse118I	RCCGGY	1 cut(s)	221
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	1 cut(s)	388
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	3 cut(s)	157, 185, 550
BseMII	CTCAG	3 cut(s)	347, 516, 528
BseRI	GAGGAG	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	138, 560
BsiHKAI	GWGCWC	1 cut(s)	362
BsiSI	CCGG	4 cut(s)	222, 275, 287, 551
BslFI	GGGAC	2 cut(s)	269, 406
BslI	CCNNNNNNNGG	3 cut(s)	157, 185, 550
BsmAI	GTCTC	4 cut(s)	250, 370, 515, 533
BsmFI	GGGAC	2 cut(s)	269, 406
BsnI	GGCC	2 cut(s)	138, 560
Bso31I	GGTCTC	2 cut(s)	370, 533
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	3 cut(s)	13, 19, 231
BspACI	CCGC	4 cut(s)	102, 135, 290, 449
BspANI	GGCC	2 cut(s)	138, 560
BspCNI	CTCAG	3 cut(s)	348, 517, 529
BspFNI	CGCG	1 cut(s)	135
BspHI	TCATGA	2 cut(s)	508, 531
BspLI	GGNNCC	2 cut(s)	139, 374
BspPI	GGATC	1 cut(s)	21
BspTNI	GGTCTC	2 cut(s)	370, 533
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	3 cut(s)	13, 19, 231
BssSI	CACGAG	2 cut(s)	367, 516
Bst2BI	CACGAG	2 cut(s)	367, 516
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	2 cut(s)	41, 406
Bst6I	CTCTTC	2 cut(s)	263, 272
BstC8I	GCNNGC	2 cut(s)	239, 309
BstDEI	CTNAG	3 cut(s)	356, 525, 537
BstDSI	CCRYGG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	3 cut(s)	16, 22, 234
BstMAI	GTCTC	4 cut(s)	250, 370, 515, 533
BstMBI	GATC	3 cut(s)	13, 19, 231
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 512
BstNI	CCWGG	1 cut(s)	562
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	3 cut(s)	285, 550, 560
BstUI	CGCG	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	138, 560
BtgI	CCRYGG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	2 cut(s)	191, 411
Cac8I	GCNNGC	2 cut(s)	239, 309
CciI	TCATGA	2 cut(s)	508, 531
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	137, 373
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	4 cut(s)	32, 509, 532, 545
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	3 cut(s)	356, 525, 537
DpnI	GATC	3 cut(s)	15, 21, 233
DpnII	GATC	3 cut(s)	13, 19, 231
Eam1104I	CTCTTC	2 cut(s)	263, 272
EarI	CTCTTC	2 cut(s)	263, 272
Ecl136II	GAGCTC	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	362
Eco31I	GGTCTC	2 cut(s)	370, 533
Eco47I	GGWCC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	560
EcoT38I	GRGCYC	1 cut(s)	362
FaeI	CATG	4 cut(s)	35, 512, 535, 548
FaqI	GGGAC	2 cut(s)	269, 406
FatI	CATG	4 cut(s)	31, 508, 531, 544
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	136, 291
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	2 cut(s)	136, 291
FspBI	CTAG	3 cut(s)	203, 218, 242
GluI	GCNGC	2 cut(s)	136, 291
HaeIII	GGCC	2 cut(s)	138, 560
HapII	CCGG	4 cut(s)	222, 275, 287, 551
Hin1II	CATG	4 cut(s)	35, 512, 535, 548
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HinfI	GANTC	3 cut(s)	130, 210, 321
HpaII	CCGG	4 cut(s)	222, 275, 287, 551
HphI	GGTGA	2 cut(s)	241, 289
Hpy166II	GTNNAC	2 cut(s)	37, 348
Hpy188I	TCNGA	2 cut(s)	121, 357
Hpy188III	TCNNGA	4 cut(s)	17, 509, 518, 532
Hpy8I	GTNNAC	2 cut(s)	37, 348
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	2 cut(s)	41, 406
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	31, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 512
HpyF3I	CTNAG	3 cut(s)	356, 525, 537
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	4 cut(s)	35, 512, 535, 548
Kzo9I	GATC	3 cut(s)	13, 19, 231
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	3 cut(s)	203, 218, 242
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	15, 21, 233
MboI	GATC	3 cut(s)	13, 19, 231
MboII	GAAGA	3 cut(s)	86, 250, 259
MfeI	CAATTG	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	1 cut(s)	416
MlyI	GAGTC	2 cut(s)	139, 204
MnlI	CCTC	8 cut(s)	151, 266, 272, 275, 386, 395, 505, 560
MspI	CCGG	4 cut(s)	222, 275, 287, 551
MspR9I	CCNGG	3 cut(s)	287, 552, 562
MunI	CAATTG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	562
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	167, 512
NciI	CCSGG	2 cut(s)	287, 552
NdeII	GATC	3 cut(s)	13, 19, 231
NlaIII	CATG	4 cut(s)	35, 512, 535, 548
NlaIV	GGNNCC	2 cut(s)	139, 374
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	35
PagI	TCATGA	2 cut(s)	508, 531
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	321
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	137, 292
PleI	GAGTC	2 cut(s)	138, 204
PpsI	GAGTC	2 cut(s)	138, 204
PpuMI	RGGWCCY	1 cut(s)	373
PsiI	TTATAA	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	2 cut(s)	139, 374
PspPI	GGNCC	2 cut(s)	137, 373
PspPPI	RGGWCCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SacI	GAGCTC	1 cut(s)	362
SatI	GCNGC	2 cut(s)	136, 291
Sau3AI	GATC	3 cut(s)	13, 19, 231
Sau96I	GGNCC	2 cut(s)	137, 373
SchI	GAGTC	2 cut(s)	139, 204
ScrFI	CCNGG	3 cut(s)	287, 552, 562
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	4 cut(s)	55, 208, 362, 387
SfaNI	GCATC	1 cut(s)	436
SinI	GGWCC	1 cut(s)	373
Sse9I	AATT	1 cut(s)	416
SsiI	CCGC	4 cut(s)	102, 135, 290, 449
SspMI	CTAG	3 cut(s)	203, 218, 242
SstI	GAGCTC	1 cut(s)	362
StyD4I	CCNGG	3 cut(s)	285, 550, 560
TaaI	ACNGT	2 cut(s)	41, 406
TaiI	ACGT	1 cut(s)	55
TaqII	GACCGA	1 cut(s)	352
TasI	AATT	1 cut(s)	416
TauI	GCSGC	2 cut(s)	138, 293
TfiI	GAWTC	1 cut(s)	321
TscAI	CASTG	2 cut(s)	198, 411
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	47, 482, 520
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	2 cut(s)	198, 411
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	373
XceI	RCATGY	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	3 cut(s)	203, 218, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.