Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004052

Physical Location & Seq

Genomic Coordinates Forward (+)

2131207 .. 2131716

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1029500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCAGACCGTCCTCAGCCTCACCATATCCAAGTTCGCCCCGTCCAGCCGCGCTATGGCGAGCACGAGTACGGTGAACATGGAGGATTTGGTGACGGTGGCCCCTCAGCCGGCCAAGTTCTTGCAGTGATAACCGGCCTTCCATTAGGTGGAACCCTACTAGCGCTTGCTGGTCTCACTCTCCTGGGGACAGTCATTGGTGCTCTCGTTGCGACCCCGCTCTTCATCATCTTCAGCCCGGTTCTTGTCCCTGCTCTTTTCGTCATCGGGCTTGCTGTCACCGGATTTCTGACCTCCGGGGCTTTTGGGCTGACTGGGCTGTCGGCGCTGTCTTGGATCACCAACTACCTCAGGAGGACACCCGTAGTGCCGGAGACCCTGGACGAGGCGAAGAGGCGCGCGGCGGAAATGGGAGAGTACGTGGGGCAGAAGACAAAGGAAGTTGGCCAGGACATCCAGAGTAAGTCCCACGAAACAAAGAGGCAAACCGGACATACTGAAAGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0010154 GO:0010344 GO:0010876 GO:0012511 GO:0016020 GO:0019915 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050826 GO:0050896 GO:0051179 GO:0051235 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090351 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

170

Amino Acids

17.91

Weight (kDa)

7.03

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oleosin	PF01277	39 - 149	3.4e-41	Oleosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01570 AT3G27660 AT3G27660 AT5G40420
fragaria_vesca	FvH4_5g05960 FvH4_6g51310
malus_domestica	MD06G1169100.v1.1 MD09G1028000.v1.1 MD14G1174400.v1.1 MD17G1029500.v1.1
prunus_persica	Prupe.3G290700_v2.0.a1 Prupe.5G167900_v2.0.a1
pyrus_communis	pycom14g14550
rosa_chinensis	RchiOBHm_Chr2g0172931 RchiOBHm_Chr7g0192881
rosa_laevigata	RLG00000004316 RLG00000022143
rosa_multiflora	Rmu_sc0002040.1_g000052 Rmu_sc0029209.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079410 Rroxscaffold_3G00262590
rosa_rugosa	Rorug02G0563700 Rorug07G0005300
rosa_samantha	Rh2AG640500 Rh2BG654100 Rh2CG619600 Rh2DG667600 Rh7AG131000 Rh7BG131800 Rh7CG135100 Rh7DG132900
rosa_wichuraiana	Rw2G052870 Rw7G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccBSI	CCGCTC	1 cut(s)	220
AccII	CGCG	3 cut(s)	52, 399, 401
AciI	CCGC	4 cut(s)	50, 218, 401, 404
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	2 cut(s)	112, 445
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	2 cut(s)	71, 419
AfeI	AGCGCT	1 cut(s)	165
AfiI	CCNNNNNNNGG	4 cut(s)	56, 110, 149, 385
AjnI	CCWGG	3 cut(s)	183, 378, 447
Alw21I	GWGCWC	2 cut(s)	66, 205
Alw26I	GTCTC	2 cut(s)	179, 368
AlwI	GGATC	1 cut(s)	344
Aor51HI	AGCGCT	1 cut(s)	165
AoxI	GGCC	4 cut(s)	100, 112, 136, 445
AspLEI	GCGC	5 cut(s)	54, 166, 328, 399, 401
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	2 cut(s)	239, 298
AsuHPI	GGTGA	5 cut(s)	14, 86, 104, 271, 331
AxyI	CCTNAGG	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	447
BauI	CACGAG	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	437
Bbv12I	GWGCWC	2 cut(s)	66, 205
BbvCI	CCTCAGC	2 cut(s)	15, 106
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	3 cut(s)	185, 380, 449
BcnI	CCSGG	2 cut(s)	239, 298
BcoDI	GTCTC	2 cut(s)	179, 368
BfaI	CTAG	1 cut(s)	161
BfoI	RGCGCY	2 cut(s)	167, 329
BisI	GCNGC	2 cut(s)	50, 402
BlsI	GCNGC	2 cut(s)	51, 403
Bme1390I	CCNGG	5 cut(s)	185, 239, 298, 380, 449
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	103, 154
BmrFI	CCNGG	5 cut(s)	185, 239, 298, 380, 449
BmrI	ACTGGG	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	437
Bpu10I	CCTNAGC	2 cut(s)	15, 106
BpuMI	CCSGG	2 cut(s)	239, 298
BsaAI	YACGTR	1 cut(s)	421
BsaI	GGTCTC	2 cut(s)	179, 368
BsaJI	CCNNGG	3 cut(s)	184, 297, 378
BsaWI	WCCGGW	2 cut(s)	281, 488
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 110, 149, 385
Bse118I	RCCGGY	2 cut(s)	110, 134
Bse1I	ACTGG	1 cut(s)	319
Bse21I	CCTNAGG	1 cut(s)	350
BseBI	CCWGG	3 cut(s)	185, 380, 449
BseDI	CCNNGG	3 cut(s)	184, 297, 378
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	4 cut(s)	56, 110, 149, 385
BseMII	CTCAG	3 cut(s)	29, 120, 364
BseNI	ACTGG	1 cut(s)	319
BsePI	GCGCGC	1 cut(s)	397
Bsh1236I	CGCG	3 cut(s)	52, 399, 401
BshFI	GGCC	4 cut(s)	102, 114, 138, 447
BsiHKAI	GWGCWC	2 cut(s)	66, 205
BsiSI	CCGG	7 cut(s)	111, 135, 239, 282, 297, 371, 489
BslFI	GGGAC	3 cut(s)	202, 233, 451
BslI	CCNNNNNNNGG	4 cut(s)	56, 110, 149, 385
BsmAI	GTCTC	2 cut(s)	179, 368
BsmFI	GGGAC	3 cut(s)	202, 233, 451
BsnI	GGCC	4 cut(s)	102, 114, 138, 447
Bso31I	GGTCTC	2 cut(s)	179, 368
Bsp1286I	GDGCHC	2 cut(s)	66, 205
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	4 cut(s)	50, 218, 401, 404
BspANI	GGCC	4 cut(s)	102, 114, 138, 447
BspCNI	CTCAG	3 cut(s)	28, 119, 363
BspFNI	CGCG	3 cut(s)	52, 399, 401
BspLI	GGNNCC	2 cut(s)	103, 154
BspPI	GGATC	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	227
BspTNI	GGTCTC	2 cut(s)	179, 368
BsrBI	CCGCTC	1 cut(s)	220
BsrFI	RCCGGY	2 cut(s)	110, 134
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	2 cut(s)	110, 134
BssECI	CCNNGG	3 cut(s)	184, 297, 378
BssHII	GCGCGC	1 cut(s)	397
BssMI	GATC	1 cut(s)	336
BssSI	CACGAG	1 cut(s)	65
Bst2BI	CACGAG	1 cut(s)	65
Bst2UI	CCWGG	3 cut(s)	185, 380, 449
Bst4CI	ACNGT	4 cut(s)	11, 74, 98, 193
Bst6I	CTCTTC	2 cut(s)	227, 386
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	5 cut(s)	62, 112, 168, 273, 399
BstDEI	CTNAG	3 cut(s)	15, 106, 350
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	3 cut(s)	52, 399, 401
BstH2I	RGCGCY	2 cut(s)	167, 329
BstHHI	GCGC	5 cut(s)	54, 166, 328, 399, 401
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	2 cut(s)	179, 368
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 316, 325
BstNI	CCWGG	3 cut(s)	185, 380, 449
BstSCI	CCNGG	5 cut(s)	183, 237, 296, 378, 447
BstUI	CGCG	3 cut(s)	52, 399, 401
BstV2I	GAAGAC	1 cut(s)	437
Bsu36I	CCTNAGG	1 cut(s)	350
BsuRI	GGCC	4 cut(s)	102, 114, 138, 447
BtsCI	GGATG	1 cut(s)	453
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	5 cut(s)	62, 112, 168, 273, 399
CfoI	GCGC	5 cut(s)	54, 166, 328, 399, 401
Cfr10I	RCCGGY	2 cut(s)	110, 134
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	70, 418
CviAII	CATG	1 cut(s)	80
CviQI	GTAC	2 cut(s)	70, 418
DdeI	CTNAG	3 cut(s)	15, 106, 350
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
DrdI	GACNNNNNNGTC	1 cut(s)	319
DseDI	GACNNNNNNGTC	1 cut(s)	319
EaeI	YGGCCR	2 cut(s)	112, 445
Eam1104I	CTCTTC	2 cut(s)	227, 386
EarI	CTCTTC	2 cut(s)	227, 386
EciI	GGCGGA	1 cut(s)	419
Eco31I	GGTCTC	2 cut(s)	179, 368
Eco47III	AGCGCT	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	217
Eco81I	CCTNAGG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoRII	CCWGG	3 cut(s)	183, 378, 447
FaeI	CATG	1 cut(s)	83
FaiI	YATR	4 cut(s)	27, 57, 81, 495
FaqI	GGGAC	3 cut(s)	202, 233, 451
FatI	CATG	1 cut(s)	79
FauI	CCCGC	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	50, 402
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	2 cut(s)	50, 402
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	5 cut(s)	53, 165, 327, 398, 400
GluI	GCNGC	2 cut(s)	50, 402
HaeII	RGCGCY	2 cut(s)	167, 329
HaeIII	GGCC	4 cut(s)	102, 114, 138, 447
HapII	CCGG	7 cut(s)	111, 135, 239, 282, 297, 371, 489
HhaI	GCGC	5 cut(s)	54, 166, 328, 399, 401
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	5 cut(s)	52, 164, 326, 397, 399
HinP1I	GCGC	5 cut(s)	52, 164, 326, 397, 399
HpaII	CCGG	7 cut(s)	111, 135, 239, 282, 297, 371, 489
HphI	GGTGA	5 cut(s)	14, 86, 104, 271, 331
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	352, 457
Hpy8I	GTNNAC	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	4 cut(s)	11, 74, 98, 193
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 316, 325
HpyF3I	CTNAG	3 cut(s)	15, 106, 350
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	5 cut(s)	52, 164, 326, 397, 399
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	336
LguI	GCTCTTC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	2 cut(s)	92, 277
MalI	GATC	1 cut(s)	338
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	1 cut(s)	336
MboII	GAAGA	4 cut(s)	214, 223, 403, 442
MhlI	GDGCHC	2 cut(s)	66, 205
MlsI	TGGCCA	1 cut(s)	447
MluNI	TGGCCA	1 cut(s)	447
Mox20I	TGGCCA	1 cut(s)	447
MroNI	GCCGGC	1 cut(s)	110
MscI	TGGCCA	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	447
MspI	CCGG	7 cut(s)	111, 135, 239, 282, 297, 371, 489
MspR9I	CCNGG	5 cut(s)	185, 239, 298, 380, 449
MvaI	CCWGG	3 cut(s)	185, 380, 449
MvnI	CGCG	3 cut(s)	52, 399, 401
MwoI	GCNNNNNNNGC	3 cut(s)	209, 316, 325
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	2 cut(s)	239, 298
NdeII	GATC	1 cut(s)	336
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	2 cut(s)	103, 154
NmuCI	GTSAC	2 cut(s)	92, 277
PauI	GCGCGC	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	227
PdiI	GCCGGC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	51, 403
Ppu21I	YACGTR	1 cut(s)	421
Psp6I	CCWGG	3 cut(s)	183, 378, 447
PspGI	CCWGG	3 cut(s)	183, 378, 447
PspN4I	GGNNCC	2 cut(s)	103, 154
PspPI	GGNCC	1 cut(s)	101
PteI	GCGCGC	1 cut(s)	397
RsaI	GTAC	2 cut(s)	71, 419
RsaNI	GTAC	2 cut(s)	70, 418
SapI	GCTCTTC	1 cut(s)	227
SatI	GCNGC	2 cut(s)	50, 402
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	5 cut(s)	185, 239, 298, 380, 449
SduI	GDGCHC	2 cut(s)	66, 205
SetI	ASST	4 cut(s)	151, 296, 351, 423
SsiI	CCGC	4 cut(s)	50, 218, 401, 404
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	5 cut(s)	183, 237, 296, 378, 447
TaaI	ACNGT	4 cut(s)	11, 74, 98, 193
TaiI	ACGT	1 cut(s)	423
TauI	GCSGC	2 cut(s)	52, 404
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	92, 277
Tsp45I	GTSAC	2 cut(s)	92, 277
TspDTI	ATGAA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	132
Van91I	CCANNNNNTGG	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	383
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.