Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004052

Physical Location & Seq

Genomic Coordinates Reverse (-)

16173340 .. 16174783

Gene Structure 1444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGGATACACACCGTGTCGACCGTACTGATAGACACTTTCAATTTCAGTCGCCCTATGAAGGCGGCCGAGGTCAAGGTCAGTATGAAGGTGACCGTGGTTACGGTGGTGGCGGTTACAAGAGCATGATGCCTGAAAGTGGCCCATCTAGTACCCAAGTATTGTCCCTGTTGATTGGAGTCCCTGTCGTCGGTTCGCTACTTGCCTTGGCTGGATTACTTCTAGCTGGTTCGGTGATCGGCTTAATGGTTGCTTTACCACTATTTCTCCTCTTCAGCCCGGTTATAGTCCCAGCGGCTCTAACTATCGGGCTTGCAATGACAGGCTTTTTAGCCTCGGGGATGTTCGGTCTAACCGGGCTTAGCTCAATCTCATGGGTCATGAACTATCTTCGTGGGACAAGGAGAACTGTGCCTGAGCAATTGGAGTATGCTAAGAGGAGAATGGCTGATGCGGTTGGCTACGCAGGACAAAAGGGCAAAGAAATGGGCCAGCATGTGCAGAACAAGGCCCAAGATGTTAAACAATATGATATTTCTAAGCCACATGACACTACCACTAAGGGTCATGAGACTCAGGGGAGGACGACGGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0010154 GO:0010344 GO:0010876 GO:0012511 GO:0016020 GO:0019915 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050826 GO:0050896 GO:0051179 GO:0051235 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090351 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

199

Amino Acids

21.28

Weight (kDa)

9.36

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oleosin	PF01277	52 - 164	5.6e-41	Oleosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01570 AT3G27660 AT3G27660 AT5G40420
fragaria_vesca	FvH4_5g05960 FvH4_6g51310
malus_domestica	MD06G1169100.v1.1 MD09G1028000.v1.1 MD14G1174400.v1.1 MD17G1029500.v1.1
prunus_persica	Prupe.3G290700_v2.0.a1 Prupe.5G167900_v2.0.a1
pyrus_communis	pycom14g14550
rosa_chinensis	RchiOBHm_Chr2g0172931 RchiOBHm_Chr7g0192881
rosa_laevigata	RLG00000004316 RLG00000022143
rosa_multiflora	Rmu_sc0002040.1_g000052 Rmu_sc0029209.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079410 Rroxscaffold_3G00262590
rosa_rugosa	Rorug02G0563700 Rorug07G0005300
rosa_samantha	Rh2AG640500 Rh2BG654100 Rh2CG619600 Rh2DG667600 Rh7AG131000 Rh7BG131800 Rh7CG135100 Rh7DG132900
rosa_wichuraiana	Rw2G052870 Rw7G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	5 cut(s)	5, 66, 114, 296, 455
AcoI	YGGCCR	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	259
AdeI	CACNNNGTG	1 cut(s)	17
AfaI	GTAC	2 cut(s)	28, 154
AfiI	CCNNNNNNNGG	3 cut(s)	62, 140, 191
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	2 cut(s)	227, 366
AluI	AGCT	2 cut(s)	227, 366
Alw26I	GTCTC	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	337
AoxI	GGCC	4 cut(s)	67, 142, 490, 510
ApeKI	GCWGC	1 cut(s)	593
AspS9I	GGNCC	3 cut(s)	143, 490, 511
AsuC2I	CCSGG	2 cut(s)	281, 358
AsuHPI	GGTGA	2 cut(s)	104, 247
AvaI	CYCGRG	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	1 cut(s)	154
BcnI	CCSGG	2 cut(s)	281, 358
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	2 cut(s)	150, 224
BisI	GCNGC	3 cut(s)	67, 297, 594
BlpI	GCTNAGC	1 cut(s)	362
BlsI	GCNGC	3 cut(s)	68, 298, 595
Bme1390I	CCNGG	2 cut(s)	281, 358
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	3 cut(s)	143, 490, 511
BmrFI	CCNGG	2 cut(s)	281, 358
BmsI	GCATC	2 cut(s)	120, 442
Bpu10I	CCTNAGC	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	362
BpuMI	CCSGG	2 cut(s)	281, 358
BsaJI	CCNNGG	4 cut(s)	70, 97, 207, 336
BsaXI	ACNNNNNCTCC	4 cut(s)	171, 201, 252, 282
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 140, 191
Bse3DI	GCAATG	1 cut(s)	324
BseDI	CCNNGG	4 cut(s)	70, 97, 207, 336
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	3 cut(s)	62, 140, 191
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	408, 590
BseRI	GAGGAG	2 cut(s)	260, 454
BseX3I	CGGCCG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	580
BseYI	CCCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	521
Bsh1285I	CGRYCG	2 cut(s)	25, 70
BshFI	GGCC	4 cut(s)	69, 144, 492, 512
BsiEI	CGRYCG	2 cut(s)	25, 70
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	2 cut(s)	281, 357
BslFI	GGGAC	4 cut(s)	151, 167, 275, 412
BslI	CCNNNNNNNGG	3 cut(s)	62, 140, 191
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	4 cut(s)	151, 167, 275, 412
BsnI	GGCC	4 cut(s)	69, 144, 492, 512
BsoBI	CYCGRG	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	237
Bsp1720I	GCTNAGC	1 cut(s)	362
BspACI	CCGC	5 cut(s)	5, 66, 114, 296, 455
BspANI	GGCC	4 cut(s)	69, 144, 492, 512
BspCNI	CTCAG	2 cut(s)	409, 589
BspHI	TCATGA	2 cut(s)	381, 568
BsrDI	GCAATG	1 cut(s)	324
BssECI	CCNNGG	4 cut(s)	70, 97, 207, 336
BssMI	GATC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	5 cut(s)	17, 26, 98, 107, 412
Bst6I	CTCTTC	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	315, 494
BstDEI	CTNAG	6 cut(s)	362, 417, 435, 540, 561, 576
BstDSI	CCRYGG	1 cut(s)	97
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	348
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	1 cut(s)	237
BstMCI	CGRYCG	2 cut(s)	25, 70
BstNSI	RCATGY	1 cut(s)	500
BstPI	GGTNACC	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	279, 356
BstV1I	GCAGC	1 cut(s)	580
BstZI	CGGCCG	1 cut(s)	67
BsuRI	GGCC	4 cut(s)	69, 144, 492, 512
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	315, 494
CciI	TCATGA	2 cut(s)	381, 568
Cfr13I	GGNCC	3 cut(s)	143, 490, 511
Csp6I	GTAC	2 cut(s)	27, 153
CviAII	CATG	7 cut(s)	127, 375, 382, 497, 548, 569, 597
CviQI	GTAC	2 cut(s)	27, 153
DdeI	CTNAG	6 cut(s)	362, 417, 435, 540, 561, 576
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
DraIII	CACNNNGTG	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	67
EagI	CGGCCG	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	207
Eco52I	CGGCCG	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	337
Eco91I	GGTNACC	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	7 cut(s)	130, 378, 385, 500, 551, 572, 600
FaqI	GGGAC	4 cut(s)	151, 167, 275, 412
FatI	CATG	7 cut(s)	126, 374, 381, 496, 547, 568, 596
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	3 cut(s)	67, 297, 594
FokI	GGATG	1 cut(s)	355
Fsp4HI	GCNGC	3 cut(s)	67, 297, 594
FspBI	CTAG	2 cut(s)	150, 224
GluI	GCNGC	3 cut(s)	67, 297, 594
GsaI	CCCAGC	1 cut(s)	296
HaeIII	GGCC	4 cut(s)	69, 144, 492, 512
HapII	CCGG	2 cut(s)	281, 357
Hin1II	CATG	7 cut(s)	130, 378, 385, 500, 551, 572, 600
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	180, 574
HpaII	CCGG	2 cut(s)	281, 357
HphI	GGTGA	2 cut(s)	104, 247
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	382, 569
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	2 cut(s)	194, 592
HpyAV	CCTTC	2 cut(s)	56, 83
HpyCH4III	ACNGT	5 cut(s)	17, 26, 98, 107, 412
HpyCH4V	TGCA	3 cut(s)	317, 502, 596
HpyF3I	CTNAG	6 cut(s)	362, 417, 435, 540, 561, 576
Hsp92II	CATG	7 cut(s)	130, 378, 385, 500, 551, 572, 600
Kzo9I	GATC	1 cut(s)	237
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	2 cut(s)	120, 442
MaeI	CTAG	2 cut(s)	150, 224
MaeIII	GTNAC	3 cut(s)	92, 101, 116
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	2 cut(s)	265, 383
MfeI	CAATTG	1 cut(s)	422
MluCI	AATT	2 cut(s)	44, 422
MlyI	GAGTC	2 cut(s)	189, 568
MnlI	CCTC	5 cut(s)	65, 281, 346, 432, 576
MseI	TTAA	2 cut(s)	245, 522
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	2 cut(s)	281, 357
MspR9I	CCNGG	2 cut(s)	281, 358
MunI	CAATTG	1 cut(s)	422
NciI	CCSGG	2 cut(s)	281, 358
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	7 cut(s)	130, 378, 385, 500, 551, 572, 600
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	500
PagI	TCATGA	2 cut(s)	381, 568
PkrI	GCNGC	3 cut(s)	68, 298, 595
PleI	GAGTC	2 cut(s)	188, 568
PpsI	GAGTC	2 cut(s)	188, 568
PspEI	GGTNACC	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	292
PspPI	GGNCC	3 cut(s)	143, 490, 511
RsaI	GTAC	2 cut(s)	28, 154
RsaNI	GTAC	2 cut(s)	27, 153
SalI	GTCGAC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	245, 522
SatI	GCNGC	3 cut(s)	67, 297, 594
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	3 cut(s)	143, 490, 511
SchI	GAGTC	2 cut(s)	189, 568
ScrFI	CCNGG	2 cut(s)	281, 358
SetI	ASST	5 cut(s)	76, 82, 94, 229, 368
SfaNI	GCATC	2 cut(s)	120, 442
Sse9I	AATT	2 cut(s)	44, 422
SsiI	CCGC	5 cut(s)	5, 66, 114, 296, 455
SspMI	CTAG	2 cut(s)	150, 224
StyD4I	CCNGG	2 cut(s)	279, 356
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	5 cut(s)	17, 26, 98, 107, 412
TaqI	TCGA	1 cut(s)	21
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	2 cut(s)	44, 422
TauI	GCSGC	2 cut(s)	69, 299
Tru1I	TTAA	2 cut(s)	245, 522
Tru9I	TTAA	2 cut(s)	245, 522
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	75, 102, 398
XceI	RCATGY	1 cut(s)	500
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	2 cut(s)	150, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.