AT3G02210

COBRA-like protein 1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
409193 .. 411873
2681 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02210.1

Sequence Viewer

Length: 1359 bp
ATGGGGTTTTTCTTGTGTTCCTCTTCTTCAATCTTCTTCAAGTTCGGAATCTCTATAATCTTTCTAGTTTCTTTCTCTGGTTTAACTCCTTCAGAAGCTTATGATCCTTTGGACCCGAGTGGGAACATTACTGTCAAATGGGATATCATAACCTGGACTGGAGATGGCTATGTGGCGACTGTAACGGTATATAATTTTCAGCAATATCGACACATTCAAGCTCCAGGTTGGACTCTTGGATGGTCATGGGCAAAGAGAGAGGTTATATGGGGAATGAATGGAGGACAAACCACAGAACAAGGAGATTGTTCTAAATTCAAAGGAACCATTCCTCATTGCTGTAAAAAGACACCTTCTGTTGTTGATCTCTTACCTGGATCTCCTTACAATCAGCAGATTGCTAATTGTTGCAGAGGGGGTGTGCTTAACTCGTGGGCTCAAGATCCCGCAACTGCTGTTTCCGCTTTCCAGCTTACTGTTGGACAAGCTGGAACCACAAATAAGACAGTTAGGGTACCTAAGAATTTCACTCTCAAAGCTCCTGGACCGGGATATACTTGTAGCCCCGCGAAGATTGTAAAACCGACTAGATTCATCGGTACTGATAAACGAAGAGTTACTCAAGCATTAATGACTTGGAATGTAACTTGCACATACTCGCAGTTCTTAGCTCAGAAAACACCAACTTGCTGTGTATCTCTTTCATCGTTTTATAACAAGACAATAGTTTCTTGTCCAACATGCTCTTGTGGATGCAGAAACACTTCTCAGCCAGGGAATTGTGTAGACCCAAAAGGTCCACGGATAGCATCAGTCATTCCAAATCCGGGGAAGAACGCATATATACCGCCTCTGGTCCAATGTACAAAGCATATGTGTCCAGTTAGAATCCACTGGCATGTGAAAGTCAACTACAAACAGTACTGGAGAGTTAAAGTCACCATCACAAATTTCAACTACAACATGAACTATTCACAGTGGAATCTCGTCGTGCAGCATCCGAATTTCGACAATCTAACTCAGACTTTTAGCTTCAACTATAAACCTCTGACTCCTTATGCTTCCATAAATGATACTGGGATTCTCTGGGGAATAAAGTTCTACAATGATCTGTTGATGCAAGCTGGGCCATTTGGTAATGTACAATCTGAGCTACTTTTCCAGAAAGAAGCATCAGCTTTCACATTTGAGAAAGGTTGGGCGTTTCCAAGAAGAATCTATTTCAATGGAGATAACTGTGTGATGCCTCCTCCTGATTCTTACCCTTGGCTGCCCAATACCGGCTCGCACAAATCAGTCGGTTCCCTGTTTGCAGCAATGGCCTTGTTACTGATTGTGTTCCTACATGGAAACTTGTAA

Protein Analysis

452

Amino Acids

50.36

Weight (kDa)

9.24

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 57 - 220 3.3e-68 COBRA-like protein
COB_C PF25079 229 - 422 4.4e-56 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 714
Acc65I GGTACC 1 cut(s) 514
AccB1I GGYRCC 1 cut(s) 514
AccI GTMKAC 1 cut(s) 786
AccII CGCG 1 cut(s) 569
AciI CCGC 4 cut(s) 447, 462, 567, 848
AclWI GGATC 3 cut(s) 98, 385, 437
AcsI RAATTY 4 cut(s) 314, 523, 949, 1003
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 5 cut(s) 516, 601, 865, 923, 1143
AfiI CCNNNNNNNGG 3 cut(s) 548, 827, 1280
AgsI TTSAA 7 cut(s) 30, 40, 218, 319, 955, 1036, 1225
AjnI CCWGG 5 cut(s) 152, 223, 373, 541, 772
AlwI GGATC 3 cut(s) 98, 385, 437
Ama87I CYCGRG 1 cut(s) 115
AoxI GGCC 2 cut(s) 1127, 1320
ApeKI GCWGC 3 cut(s) 994, 1270, 1313
ApoI RAATTY 4 cut(s) 314, 523, 949, 1003
AseI ATTAAT 1 cut(s) 629
Asp700I GAANNNNTTC 1 cut(s) 763
Asp718I GGTACC 1 cut(s) 514
AspS9I GGNCC 5 cut(s) 112, 545, 797, 856, 1127
AsuC2I CCSGG 2 cut(s) 549, 828
AsuHPI GGTGA 1 cut(s) 931
AvaI CYCGRG 1 cut(s) 115
AvaII GGWCC 4 cut(s) 112, 545, 797, 856
BanI GGYRCC 1 cut(s) 514
BanII GRGCYC 1 cut(s) 439
BauI CACGAG 1 cut(s) 430
BbvI GCAGC 3 cut(s) 1006, 1257, 1325
BccI CCATC 3 cut(s) 158, 234, 950
BciT130I CCWGG 5 cut(s) 154, 225, 375, 543, 774
BcnI CCSGG 2 cut(s) 549, 828
BfaI CTAG 2 cut(s) 65, 588
BisI GCNGC 3 cut(s) 995, 1271, 1314
BlsI GCNGC 3 cut(s) 996, 1272, 1315
BmcAI AGTACT 1 cut(s) 923
Bme1390I CCNGG 7 cut(s) 154, 225, 375, 543, 549, 774, 828
Bme18I GGWCC 4 cut(s) 112, 545, 797, 856
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 5 cut(s) 112, 545, 797, 856, 1127
BmiI GGNNCC 5 cut(s) 114, 325, 493, 516, 1303
BmrFI CCNGG 7 cut(s) 154, 225, 375, 543, 549, 774, 828
BmrI ACTGGG 1 cut(s) 1086
BmsI GCATC 6 cut(s) 743, 818, 1006, 1107, 1181, 1233
BmuI ACTGGG 1 cut(s) 1086
BpmI CTGGAG 3 cut(s) 180, 207, 946
BpuEI CTTGAG 2 cut(s) 423, 606
BpuMI CCSGG 2 cut(s) 549, 828
BsaJI CCNNGG 4 cut(s) 773, 800, 827, 1265
Bsc4I CCNNNNNNNGG 3 cut(s) 548, 827, 1280
Bse118I RCCGGY 1 cut(s) 1280
Bse1I ACTGG 5 cut(s) 163, 881, 899, 929, 1081
Bse3DI GCAATG 2 cut(s) 334, 1323
BseBI CCWGG 5 cut(s) 154, 225, 375, 543, 774
BseDI CCNNGG 4 cut(s) 773, 800, 827, 1265
BseGI GGATG 3 cut(s) 245, 758, 997
BseLI CCNNNNNNNGG 3 cut(s) 548, 827, 1280
BseMI GCAATG 2 cut(s) 334, 1323
BseMII CTCAG 4 cut(s) 686, 782, 1034, 1140
BseNI ACTGG 5 cut(s) 163, 881, 899, 929, 1081
BseRI GAGGAG 1 cut(s) 1239
BseXI GCAGC 3 cut(s) 1006, 1257, 1325
BseYI CCCAGC 1 cut(s) 1124
BsgI GTGCAG 1 cut(s) 1013
Bsh1236I CGCG 1 cut(s) 569
BshFI GGCC 2 cut(s) 1129, 1322
BshNI GGYRCC 1 cut(s) 514
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 3 cut(s) 548, 827, 1281
BslI CCNNNNNNNGG 3 cut(s) 548, 827, 1280
BsnI GGCC 2 cut(s) 1129, 1322
BsoBI CYCGRG 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 439
Bsp1407I TGTACA 2 cut(s) 863, 1141
Bsp143I GATC 5 cut(s) 103, 364, 377, 442, 1108
BspACI CCGC 4 cut(s) 447, 462, 567, 848
BspANI GGCC 2 cut(s) 1129, 1322
BspCNI CTCAG 4 cut(s) 685, 781, 1033, 1141
BspFNI CGCG 1 cut(s) 569
BspLI GGNNCC 5 cut(s) 114, 325, 493, 516, 1303
BspPI GGATC 3 cut(s) 98, 385, 437
BspT107I GGYRCC 1 cut(s) 514
BsrDI GCAATG 2 cut(s) 334, 1323
BsrFI RCCGGY 1 cut(s) 1280
BsrGI TGTACA 2 cut(s) 863, 1141
BsrI ACTGG 5 cut(s) 163, 881, 899, 929, 1081
BssAI RCCGGY 1 cut(s) 1280
BssECI CCNNGG 4 cut(s) 773, 800, 827, 1265
BssMI GATC 5 cut(s) 103, 364, 377, 442, 1108
BssSI CACGAG 1 cut(s) 430
BssT1I CCWWGG 1 cut(s) 1265
Bst2BI CACGAG 1 cut(s) 430
Bst2UI CCWGG 5 cut(s) 154, 225, 375, 543, 774
Bst4CI ACNGT 8 cut(s) 133, 181, 187, 478, 508, 921, 978, 1238
Bst6I CTCTTC 2 cut(s) 28, 607
BstAUI TGTACA 2 cut(s) 863, 1141
BstC8I GCNNGC 2 cut(s) 1122, 1286
BstDEI CTNAG 6 cut(s) 519, 667, 672, 768, 1020, 1149
BstDSI CCRYGG 1 cut(s) 800
BstF5I GGATG 3 cut(s) 245, 758, 997
BstFNI CGCG 1 cut(s) 569
BstKTI GATC 5 cut(s) 106, 367, 380, 445, 1111
BstMBI GATC 5 cut(s) 103, 364, 377, 442, 1108
BstMWI GCNNNNNNNGC 3 cut(s) 461, 1126, 1319
BstNI CCWGG 5 cut(s) 154, 225, 375, 543, 774
BstNSI RCATGY 2 cut(s) 744, 902
BstSCI CCNGG 7 cut(s) 152, 223, 373, 541, 547, 772, 826
BstUI CGCG 1 cut(s) 569
BstV1I GCAGC 3 cut(s) 1006, 1257, 1325
BstX2I RGATCY 2 cut(s) 377, 442
BstYI RGATCY 2 cut(s) 377, 442
BsuRI GGCC 2 cut(s) 1129, 1322
BtgI CCRYGG 1 cut(s) 800
BtsCI GGATG 3 cut(s) 245, 758, 997
BtsIMutI CAGTG 2 cut(s) 892, 983
Cac8I GCNNGC 2 cut(s) 1122, 1286
Cfr10I RCCGGY 1 cut(s) 1280
Cfr13I GGNCC 5 cut(s) 112, 545, 797, 856, 1127
Csp6I GTAC 5 cut(s) 515, 600, 864, 922, 1142
CviAII CATG 5 cut(s) 246, 741, 899, 964, 1346
CviQI GTAC 5 cut(s) 515, 600, 864, 922, 1142
DdeI CTNAG 6 cut(s) 519, 667, 672, 768, 1020, 1149
DpnI GATC 5 cut(s) 105, 366, 379, 444, 1110
DpnII GATC 5 cut(s) 103, 364, 377, 442, 1108
Eam1104I CTCTTC 2 cut(s) 28, 607
EarI CTCTTC 2 cut(s) 28, 607
Eco130I CCWWGG 1 cut(s) 1265
Eco24I GRGCYC 1 cut(s) 439
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 4 cut(s) 112, 545, 797, 856
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 115
EcoRII CCWGG 5 cut(s) 152, 223, 373, 541, 772
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 1265
EcoT38I GRGCYC 1 cut(s) 439
ErhI CCWWGG 1 cut(s) 1265
FaeI CATG 5 cut(s) 249, 744, 902, 967, 1349
FatI CATG 5 cut(s) 245, 740, 898, 963, 1345
FauI CCCGC 2 cut(s) 454, 574
FauNDI CATATG 1 cut(s) 873
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 3 cut(s) 995, 1271, 1314
FokI GGATG 3 cut(s) 252, 765, 984
FriOI GRGCYC 1 cut(s) 439
Fsp4HI GCNGC 3 cut(s) 995, 1271, 1314
FspBI CTAG 2 cut(s) 65, 588
GluI GCNGC 3 cut(s) 995, 1271, 1314
GsaI CCCAGC 1 cut(s) 1128
GsuI CTGGAG 3 cut(s) 180, 207, 946
HaeIII GGCC 2 cut(s) 1129, 1322
HapII CCGG 3 cut(s) 548, 827, 1281
Hin1II CATG 5 cut(s) 249, 744, 902, 967, 1349
HincII GTYRAC 1 cut(s) 910
HindII GTYRAC 1 cut(s) 910
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 9 cut(s) 48, 232, 591, 888, 982, 1051, 1081, 1215, 1256
HpaII CCGG 3 cut(s) 548, 827, 1281
HphI GGTGA 1 cut(s) 931
Hpy166II GTNNAC 3 cut(s) 787, 800, 910
Hpy188I TCNGA 7 cut(s) 47, 94, 675, 1002, 1023, 1050, 1150
Hpy188III TCNNGA 3 cut(s) 440, 1162, 1253
Hpy8I GTNNAC 3 cut(s) 787, 800, 910
Hpy99I CGWCG 1 cut(s) 992
HpyAV CCTTC 2 cut(s) 99, 363
HpyCH4III ACNGT 8 cut(s) 133, 181, 187, 478, 508, 921, 978, 1238
HpyCH4V TGCA 6 cut(s) 411, 651, 756, 994, 1120, 1313
HpyF10VI GCNNNNNNNGC 3 cut(s) 461, 1126, 1319
HpyF3I CTNAG 6 cut(s) 519, 667, 672, 768, 1020, 1149
Hsp92II CATG 5 cut(s) 249, 744, 902, 967, 1349
KpnI GGTACC 1 cut(s) 518
Kzo9I GATC 5 cut(s) 103, 364, 377, 442, 1108
LmnI GCTCC 2 cut(s) 226, 544
Lsp1109I GCAGC 3 cut(s) 1006, 1257, 1325
LweI GCATC 6 cut(s) 743, 818, 1006, 1107, 1181, 1233
MaeI CTAG 2 cut(s) 65, 588
MaeIII GTNAC 5 cut(s) 181, 616, 643, 937, 1326
MalI GATC 5 cut(s) 105, 366, 379, 444, 1110
MboI GATC 5 cut(s) 103, 364, 377, 442, 1108
MboII GAAGA 8 cut(s) 15, 18, 25, 28, 583, 624, 844, 1224
MflI RGATCY 2 cut(s) 377, 442
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 7 cut(s) 193, 314, 403, 523, 778, 949, 1003
MlyI GAGTC 2 cut(s) 226, 1045
MmeI TCCRAC 3 cut(s) 209, 460, 761
MnlI CCTC 9 cut(s) 31, 253, 275, 342, 407, 861, 1056, 1257, 1260
MroXI GAANNNNTTC 1 cut(s) 763
MseI TTAA 4 cut(s) 83, 426, 629, 933
MslI CAYNNNNRTG 1 cut(s) 897
MspI CCGG 3 cut(s) 548, 827, 1281
MspR9I CCNGG 7 cut(s) 154, 225, 375, 543, 549, 774, 828
MvaI CCWGG 5 cut(s) 154, 225, 375, 543, 774
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 3 cut(s) 461, 1126, 1319
NciI CCSGG 2 cut(s) 549, 828
NdeI CATATG 1 cut(s) 873
NdeII GATC 5 cut(s) 103, 364, 377, 442, 1108
NlaIII CATG 5 cut(s) 249, 744, 902, 967, 1349
NlaIV GGNNCC 5 cut(s) 114, 325, 493, 516, 1303
NmuCI GTSAC 1 cut(s) 937
NspI RCATGY 2 cut(s) 744, 902
PdmI GAANNNNTTC 1 cut(s) 763
PfeI GAWTC 7 cut(s) 48, 591, 888, 982, 1081, 1215, 1256
PfoI TCCNGGA 1 cut(s) 541
PkrI GCNGC 3 cut(s) 996, 1272, 1315
PleI GAGTC 2 cut(s) 226, 1045
PpsI GAGTC 2 cut(s) 226, 1045
PshBI ATTAAT 1 cut(s) 629
PsiI TTATAA 1 cut(s) 714
Psp6I CCWGG 5 cut(s) 152, 223, 373, 541, 772
PspFI CCCAGC 1 cut(s) 1124
PspGI CCWGG 5 cut(s) 152, 223, 373, 541, 772
PspN4I GGNNCC 5 cut(s) 114, 325, 493, 516, 1303
PspPI GGNCC 5 cut(s) 112, 545, 797, 856, 1127
PsuI RGATCY 2 cut(s) 377, 442
RsaI GTAC 5 cut(s) 516, 601, 865, 923, 1143
RsaNI GTAC 5 cut(s) 515, 600, 864, 922, 1142
RseI CAYNNNNRTG 1 cut(s) 897
SaqAI TTAA 4 cut(s) 83, 426, 629, 933
SatI GCNGC 3 cut(s) 995, 1271, 1314
Sau3AI GATC 5 cut(s) 103, 364, 377, 442, 1108
Sau96I GGNCC 5 cut(s) 112, 545, 797, 856, 1127
ScaI AGTACT 1 cut(s) 923
SchI GAGTC 2 cut(s) 226, 1045
ScrFI CCNGG 7 cut(s) 154, 225, 375, 543, 549, 774, 828
SduI GDGCHC 1 cut(s) 439
SfaNI GCATC 6 cut(s) 743, 818, 1006, 1107, 1181, 1233
SinI GGWCC 4 cut(s) 112, 545, 797, 856
SmiMI CAYNNNNRTG 1 cut(s) 897
SmlI CTYRAG 2 cut(s) 438, 621
SmoI CTYRAG 2 cut(s) 438, 621
Sse9I AATT 7 cut(s) 193, 314, 403, 523, 778, 949, 1003
SsiI CCGC 4 cut(s) 447, 462, 567, 848
SspMI CTAG 2 cut(s) 65, 588
StyD4I CCNGG 7 cut(s) 152, 223, 373, 541, 547, 772, 826
StyI CCWWGG 1 cut(s) 1265
TaaI ACNGT 8 cut(s) 133, 181, 187, 478, 508, 921, 978, 1238
TaqI TCGA 2 cut(s) 208, 1008
TasI AATT 7 cut(s) 193, 314, 403, 523, 778, 949, 1003
TatI WGTACW 3 cut(s) 863, 921, 1141
TfiI GAWTC 7 cut(s) 48, 591, 888, 982, 1081, 1215, 1256
Tru1I TTAA 4 cut(s) 83, 426, 629, 933
Tru9I TTAA 4 cut(s) 83, 426, 629, 933
TscAI CASTG 2 cut(s) 899, 983
TseFI GTSAC 1 cut(s) 937
TseI GCWGC 3 cut(s) 994, 1270, 1313
Tsp45I GTSAC 1 cut(s) 937
TspDTI ATGAA 4 cut(s) 290, 583, 693, 980
TspGWI ACGGA 1 cut(s) 817
TspRI CASTG 2 cut(s) 899, 983
VpaK11BI GGWCC 4 cut(s) 112, 545, 797, 856
VspI ATTAAT 1 cut(s) 629
XapI RAATTY 4 cut(s) 314, 523, 949, 1003
XceI RCATGY 2 cut(s) 744, 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 786
XmnI GAANNNNTTC 1 cut(s) 763
XspI CTAG 2 cut(s) 65, 588
ZrmI AGTACT 1 cut(s) 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.