Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004894

Physical Location & Seq

Genomic Coordinates Forward (+)

75585638 .. 75588540

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G048170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGGGTTTCTGTTGTCCAAGCTAACCAGTTTGGCCACTGTTGTTCTATTTGGGCTTGGTTTCTGCAGCTTCTTCACCTCAACAGATGCATATGATCCACTTGATCCTAATGGCAACATCACAATTAAGTGGGATATTATAAGCTGGACACCTGATGGCTATGTTGCCGTTGTTACGCTTTTTAACTTCCAGCAGTATAGACACATTCAAGCACCAGGCTGGACGCTTGGATGGACATGGGCAAAGAAGGAGGTAATTTGGAACATGGTGGGAGGACAAGCCACCGATCAAGGCGATTGTTCAAAATTTAAGACAACTCCCCCACATTGCTGCAAAAAGACCCCAACCATTGTTGATCTACTCCCTGGAACTCCGTACAATCAGCAGTATTCCAATTGTTGTAGAGGGGGAGTGCTGAGCTCATGGATACAGGATCCATCCAATGCTGCAGCTTCTTTTCAAATAAGTGCTTCCGAAAAACTATACCCTATTGGACCTGGGCCTGGGTACACTTGTGGTGTGGCAAAAGTTGTTAAACCAACTAAATTCTTTACAGCTGATAAAAGAAGAGTCTCTCAAGCCCTGATGACATGGAATGTGACATGCACATATTCACAGTTCCTGGCTCAGAAAGCTCCTACTTGCTGTGTCTCGTTGTCTTCCTTCTACAATGACACAGTAGTTCCCTGCCCGACATGTTCGTGTGGCTGCCAAAACAACATAACTCATCCTGGAAGCTGTGTAGTGCCAGAGTCTCCGTATTTGGCTTCAGTTGTTTCAGCTGCTGATAAGAATTCACCTTTGGTTAGATGTACTAGCCATATGTGCCCTATCAGAGTTCATTGGCACGTCAAGCTGAATTACAAGGAATACTGGCGAGTGAAGGTCACAATTACAAACTTTGATTACAGGAGGAATTATTCTGATTGGAACTTGGTTGCCCAACACCCAAATTTTGACAATCTTACCGAAATTTTCAGCTTCAACGCAAAGTCCTTGACTCCTTATGGAACCATAAATGATACTGTAATGCTATGGGGAACCAAGTTCTACAACGACATGCTGGTGCAATCTGGGCCTCTAGGTAATGTGCAGTCAGAGATGCTTTTCCGGAAGAATCCAGCCACCTTCACTTTTGACAAGGGATGGGCGTTCCCAAGAAGGATCTATTTCAATGGTGATACTTGTGTAATGCCACCCCCAGATGCCTTTCCACATTTGCCAAATGCTGGTTTCCGACAGTATGTTTCTCTGCTTACTGTGATCATGATTTCAGCATCAACATTTGCATTCACATATGCCTATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

436

Amino Acids

48.76

Weight (kDa)

8.7

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	54 - 205	2.3e-55	COBRA-like protein
COB_C	PF25079	214 - 405	2.5e-58	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02210 AT3G29810
fragaria_vesca	FvH4_6g46460 FvH4_6g46530
malus_domestica	MD09G1072800.v1.1 MD17G1064200.v1.1
prunus_persica	Prupe.3G250400_v2.0.a1 Prupe.3G250400_v2.0.a1
pyrus_communis	pycom12433g00030 pycom17g06430
rosa_chinensis	RchiOBHm_Chr2g0153051 RchiOBHm_Chr2g0165011 RchiOBHm_Chr2g0165171 RchiOBHm_Chr5g0001191
rosa_multiflora	Rmu_sc0001097.1_g000020 Rmu_sc0001097.1_g000043
rosa_roxburghii	Rroxscaffold_2G00085970 Rroxscaffold_2G00086120
rosa_rugosa	Rorug02G0512200 Rorug02G0512300 Rorug02G0512900
rosa_samantha	Rh2AG580300 Rh2AG581100 Rh2BG591600 Rh2BG592400 Rh2CG562100 Rh2CG563100 Rh2DG601700 Rh2DG602400
rosa_wichuraiana	Rw2G048170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	1229
AccIII	TCCGGA	1 cut(s)	1110
AclWI	GGATC	5 cut(s)	89, 98, 428, 441, 1172
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	5 cut(s)	305, 545, 793, 952, 972
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	3 cut(s)	377, 509, 814
AfiI	CCNNNNNNNGG	2 cut(s)	503, 1229
AflIII	ACRYGT	1 cut(s)	695
AgsI	TTSAA	5 cut(s)	209, 303, 461, 985, 1174
AjiI	CACGTC	1 cut(s)	850
AjnI	CCWGG	6 cut(s)	214, 364, 496, 502, 621, 730
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	3 cut(s)	577, 655, 759
AlwI	GGATC	5 cut(s)	89, 98, 428, 441, 1172
AlwNI	CAGNNNCTG	2 cut(s)	622, 785
Aor13HI	TCCGGA	1 cut(s)	1110
AoxI	GGCC	3 cut(s)	33, 500, 1076
ApeKI	GCWGC	6 cut(s)	66, 330, 446, 449, 708, 782
ApoI	RAATTY	5 cut(s)	305, 545, 793, 952, 972
AspS9I	GGNCC	3 cut(s)	494, 500, 1076
AsuHPI	GGTGA	3 cut(s)	67, 789, 1190
AvaII	GGWCC	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	830
BaeI	ACNNNNGTAYC	4 cut(s)	499, 532, 1173, 1206
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	6 cut(s)	78, 317, 433, 461, 695, 769
BccI	CCATC	4 cut(s)	149, 225, 445, 1140
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	6 cut(s)	216, 366, 498, 504, 623, 732
BciVI	GTATCC	1 cut(s)	420
BclI	TGATCA	1 cut(s)	1263
BcoDI	GTCTC	3 cut(s)	577, 655, 759
BfaI	CTAG	2 cut(s)	816, 1082
BfmI	CTRYAG	2 cut(s)	64, 447
BfuI	GTATCC	1 cut(s)	420
BisI	GCNGC	6 cut(s)	67, 331, 447, 450, 709, 783
BlpI	GCTNAGC	1 cut(s)	416
BlsI	GCNGC	6 cut(s)	68, 332, 448, 451, 710, 784
Bme1390I	CCNGG	6 cut(s)	216, 366, 498, 504, 623, 732
Bme18I	GGWCC	1 cut(s)	494
BmgBI	CACGTC	1 cut(s)	850
BmgT120I	GGNCC	3 cut(s)	494, 500, 1076
BmiI	GGNNCC	3 cut(s)	435, 1012, 1042
BmrFI	CCNGG	6 cut(s)	216, 366, 498, 504, 623, 732
BmsI	GCATC	4 cut(s)	76, 1092, 1195, 1286
BpiI	GAAGAC	1 cut(s)	651
Bpu1102I	GCTNAGC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	561
BsaJI	CCNNGG	3 cut(s)	364, 497, 503
BsaWI	WCCGGW	1 cut(s)	1110
Bsc4I	CCNNNNNNNGG	2 cut(s)	503, 1229
Bse1I	ACTGG	2 cut(s)	27, 878
Bse3DI	GCAATG	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	1110
BseBI	CCWGG	6 cut(s)	216, 366, 498, 504, 623, 732
BseDI	CCNNGG	3 cut(s)	364, 497, 503
BseGI	GGATG	4 cut(s)	236, 437, 727, 1151
BseLI	CCNNNNNNNGG	2 cut(s)	503, 1229
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	407, 641
BseNI	ACTGG	2 cut(s)	27, 878
BseSI	GKGCMC	1 cut(s)	830
BseXI	GCAGC	6 cut(s)	78, 317, 433, 461, 695, 769
BsgI	GTGCAG	1 cut(s)	1112
BshFI	GGCC	3 cut(s)	35, 502, 1078
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	1111
BslI	CCNNNNNNNGG	2 cut(s)	503, 1229
BsmAI	GTCTC	3 cut(s)	577, 655, 759
BsmI	GAATGC	1 cut(s)	1289
BsnI	GGCC	3 cut(s)	35, 502, 1078
Bsp1286I	GDGCHC	2 cut(s)	422, 830
Bsp13I	TCCGGA	1 cut(s)	1110
Bsp143I	GATC	7 cut(s)	94, 103, 286, 355, 433, 1164, 1263
Bsp1720I	GCTNAGC	1 cut(s)	416
BspANI	GGCC	3 cut(s)	35, 502, 1078
BspCNI	CTCAG	2 cut(s)	408, 640
BspEI	TCCGGA	1 cut(s)	1110
BspHI	TCATGA	1 cut(s)	1266
BspLI	GGNNCC	3 cut(s)	435, 1012, 1042
BspMAI	CTGCAG	2 cut(s)	68, 451
BspPI	GGATC	5 cut(s)	89, 98, 428, 441, 1172
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	27, 878
BssECI	CCNNGG	3 cut(s)	364, 497, 503
BssMI	GATC	7 cut(s)	94, 103, 286, 355, 433, 1164, 1263
Bst2UI	CCWGG	6 cut(s)	216, 366, 498, 504, 623, 732
Bst4CI	ACNGT	6 cut(s)	40, 618, 679, 1027, 1242, 1261
Bst6I	CTCTTC	1 cut(s)	562
BstDEI	CTNAG	3 cut(s)	416, 627, 1308
BstF5I	GGATG	4 cut(s)	236, 437, 727, 1151
BstKTI	GATC	7 cut(s)	97, 106, 289, 358, 436, 1167, 1266
BstMAI	GTCTC	3 cut(s)	577, 655, 759
BstMBI	GATC	7 cut(s)	94, 103, 286, 355, 433, 1164, 1263
BstMWI	GCNNNNNNNGC	4 cut(s)	632, 825, 853, 1075
BstNI	CCWGG	6 cut(s)	216, 366, 498, 504, 623, 732
BstNSI	RCATGY	3 cut(s)	606, 699, 1063
BstSCI	CCNGG	6 cut(s)	214, 364, 496, 502, 621, 730
BstSFI	CTRYAG	2 cut(s)	64, 447
BstSLI	GKGCMC	1 cut(s)	830
BstV1I	GCAGC	6 cut(s)	78, 317, 433, 461, 695, 769
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	2 cut(s)	433, 1164
BstYI	RGATCY	2 cut(s)	433, 1164
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	35, 502, 1078
BtrI	CACGTC	1 cut(s)	850
BtsCI	GGATG	4 cut(s)	236, 437, 727, 1151
BtsIMutI	CAGTG	1 cut(s)	36
CaiI	CAGNNNCTG	2 cut(s)	622, 785
CciI	TCATGA	1 cut(s)	1266
Cfr13I	GGNCC	3 cut(s)	494, 500, 1076
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	3 cut(s)	376, 508, 813
CviAII	CATG	8 cut(s)	237, 265, 423, 591, 603, 696, 1060, 1267
CviQI	GTAC	3 cut(s)	376, 508, 813
DdeI	CTNAG	3 cut(s)	416, 627, 1308
DpnI	GATC	7 cut(s)	96, 105, 288, 357, 435, 1166, 1265
DpnII	GATC	7 cut(s)	94, 103, 286, 355, 433, 1164, 1263
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
Ecl136II	GAGCTC	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	6 cut(s)	214, 364, 496, 502, 621, 730
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	422
FaeI	CATG	8 cut(s)	240, 268, 426, 594, 606, 699, 1063, 1270
FatI	CATG	8 cut(s)	236, 264, 422, 590, 602, 695, 1059, 1266
FauNDI	CATATG	3 cut(s)	91, 822, 1297
FbaI	TGATCA	1 cut(s)	1263
Fnu4HI	GCNGC	6 cut(s)	67, 331, 447, 450, 709, 783
FokI	GGATG	4 cut(s)	243, 424, 714, 1158
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	6 cut(s)	67, 331, 447, 450, 709, 783
FspBI	CTAG	2 cut(s)	816, 1082
GluI	GCNGC	6 cut(s)	67, 331, 447, 450, 709, 783
HaeIII	GGCC	3 cut(s)	35, 502, 1078
HapII	CCGG	1 cut(s)	1111
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	8 cut(s)	240, 268, 426, 594, 606, 699, 1063, 1270
HinfI	GANTC	4 cut(s)	570, 752, 1000, 1117
HpaII	CCGG	1 cut(s)	1111
HphI	GGTGA	3 cut(s)	67, 789, 1190
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	6 cut(s)	475, 630, 836, 925, 1099, 1238
Hpy188III	TCNNGA	2 cut(s)	1111, 1267
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	5 cut(s)	241, 673, 877, 1138, 1155
HpyCH4III	ACNGT	6 cut(s)	40, 618, 679, 1027, 1242, 1261
HpyCH4IV	ACGT	1 cut(s)	849
HpyCH4V	TGCA	8 cut(s)	66, 89, 333, 449, 606, 1069, 1093, 1289
HpyF10VI	GCNNNNNNNGC	4 cut(s)	632, 825, 853, 1075
HpyF3I	CTNAG	3 cut(s)	416, 627, 1308
HpySE526I	ACGT	1 cut(s)	849
Hsp92II	CATG	8 cut(s)	240, 268, 426, 594, 606, 699, 1063, 1270
Kpn2I	TCCGGA	1 cut(s)	1110
Ksp22I	TGATCA	1 cut(s)	1263
Kzo9I	GATC	7 cut(s)	94, 103, 286, 355, 433, 1164, 1263
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	6 cut(s)	78, 317, 433, 461, 695, 769
LweI	GCATC	4 cut(s)	76, 1092, 1195, 1286
MaeI	CTAG	2 cut(s)	816, 1082
MaeII	ACGT	1 cut(s)	849
MaeIII	GTNAC	3 cut(s)	172, 598, 886
MalI	GATC	7 cut(s)	96, 105, 288, 357, 435, 1166, 1265
MboI	GATC	7 cut(s)	94, 103, 286, 355, 433, 1164, 1263
MboII	GAAGA	4 cut(s)	64, 579, 651, 1126
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	2 cut(s)	433, 1164
MhlI	GDGCHC	2 cut(s)	422, 830
MlsI	TGGCCA	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	3 cut(s)	579, 761, 994
MmeI	TCCRAC	1 cut(s)	1261
MnlI	CCTC	6 cut(s)	88, 244, 266, 398, 906, 1089
Mox20I	TGGCCA	1 cut(s)	35
Mph1103I	ATGCAT	1 cut(s)	91
MroI	TCCGGA	1 cut(s)	1110
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	4 cut(s)	126, 183, 309, 534
MslI	CAYNNNNRTG	2 cut(s)	700, 1064
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	2 cut(s)	557, 782
MspI	CCGG	1 cut(s)	1111
MspR9I	CCNGG	6 cut(s)	216, 366, 498, 504, 623, 732
MunI	CAATTG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	1289
MvaI	CCWGG	6 cut(s)	216, 366, 498, 504, 623, 732
MwoI	GCNNNNNNNGC	4 cut(s)	632, 825, 853, 1075
NdeI	CATATG	3 cut(s)	91, 822, 1297
NdeII	GATC	7 cut(s)	94, 103, 286, 355, 433, 1164, 1263
NlaIII	CATG	8 cut(s)	240, 268, 426, 594, 606, 699, 1063, 1270
NlaIV	GGNNCC	3 cut(s)	435, 1012, 1042
NmuCI	GTSAC	2 cut(s)	598, 886
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	3 cut(s)	606, 699, 1063
PagI	TCATGA	1 cut(s)	1266
PciI	ACATGT	1 cut(s)	695
PctI	GAATGC	1 cut(s)	1289
PfeI	GAWTC	1 cut(s)	1117
PflMI	CCANNNNNTGG	1 cut(s)	1229
PfoI	TCCNGGA	1 cut(s)	730
PkrI	GCNGC	6 cut(s)	68, 332, 448, 451, 710, 784
PleI	GAGTC	3 cut(s)	578, 760, 994
PpsI	GAGTC	3 cut(s)	578, 760, 994
PscI	ACATGT	1 cut(s)	695
PsiI	TTATAA	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	422
Psp6I	CCWGG	6 cut(s)	214, 364, 496, 502, 621, 730
PspGI	CCWGG	6 cut(s)	214, 364, 496, 502, 621, 730
PspN4I	GGNNCC	3 cut(s)	435, 1012, 1042
PspPI	GGNCC	3 cut(s)	494, 500, 1076
PstI	CTGCAG	2 cut(s)	68, 451
PstNI	CAGNNNCTG	2 cut(s)	622, 785
PsuI	RGATCY	2 cut(s)	433, 1164
PvuII	CAGCTG	2 cut(s)	557, 782
RsaI	GTAC	3 cut(s)	377, 509, 814
RsaNI	GTAC	3 cut(s)	376, 508, 813
RseI	CAYNNNNRTG	2 cut(s)	700, 1064
SacI	GAGCTC	1 cut(s)	422
SaqAI	TTAA	4 cut(s)	126, 183, 309, 534
SatI	GCNGC	6 cut(s)	67, 331, 447, 450, 709, 783
Sau3AI	GATC	7 cut(s)	94, 103, 286, 355, 433, 1164, 1263
Sau96I	GGNCC	3 cut(s)	494, 500, 1076
SchI	GAGTC	3 cut(s)	579, 761, 994
ScrFI	CCNGG	6 cut(s)	216, 366, 498, 504, 623, 732
SduI	GDGCHC	2 cut(s)	422, 830
SfaNI	GCATC	4 cut(s)	76, 1092, 1195, 1286
SfcI	CTRYAG	2 cut(s)	64, 447
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	2 cut(s)	700, 1064
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
SspMI	CTAG	2 cut(s)	816, 1082
SstI	GAGCTC	1 cut(s)	422
StyD4I	CCNGG	6 cut(s)	214, 364, 496, 502, 621, 730
TaaI	ACNGT	6 cut(s)	40, 618, 679, 1027, 1242, 1261
TaiI	ACGT	1 cut(s)	852
TatI	WGTACW	1 cut(s)	812
TfiI	GAWTC	1 cut(s)	1117
Tru1I	TTAA	4 cut(s)	126, 183, 309, 534
Tru9I	TTAA	4 cut(s)	126, 183, 309, 534
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	2 cut(s)	598, 886
TseI	GCWGC	6 cut(s)	66, 330, 446, 449, 708, 782
Tsp45I	GTSAC	2 cut(s)	598, 886
TspDTI	ATGAA	1 cut(s)	830
TspGWI	ACGGA	2 cut(s)	363, 747
TspRI	CASTG	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	1229
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	5 cut(s)	305, 545, 793, 952, 972
XceI	RCATGY	3 cut(s)	606, 699, 1063
XspI	CTAG	2 cut(s)	816, 1082
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.