Rh2DG601700

cobra-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004894
Physical Location & Seq
Forward (+)
83365973 .. 83370004
4032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG601700.1

Sequence Viewer

Length: 1095 bp
ATGGGGTTTCTGTTGTCCAAGCTAACCAGTTTGGCCACTGTTGTTCTATTTGGGCTTGGTTTCTGCAGCTTCTTCACCTCAACAGATGCATATGATCCGCTTGATCCTAATGGCAACATCACAATTAAGTGGGATATTATAAGCTGGACCCCTGATGGCTATGTTGCCGTTGCTACGCTTTTTAACTTCCAGCAGTATAGACACATTCAAGCACCAGGCTGGACGCTTGGATGGACATGGGCAAAGAAGGAGGTAATTTGGAACATGGTGGGAGGACAAGCCACCGATCAAGGTGATTGTTCAAAATTTAAGACAACTCCCCCACATTGCTGCAAAAAGACCCCAACCATTGTTGATCTACTCCCTGGAACCCCGTACAATCAGCAGTATTCCAATTGTTGTAGAGGGGGAGTGCTGAGCTCATGGATACAGGATCCATCCAATGCTGTAGCTTCTTTTCAAATAAGTGTTGGTCGATCTGGAACGACCAACAAGACAGTTAGGCTTCCGAAAAACTATACCCTAATGGGACCTGGGCCTGGGTACACTTGTGGTGTTGCAAAAGTTGTTAAACCAACTAAATTCTTTACAGCTGATAAAAGAAGAGTCTCTCAAGCCCTGATGACATGGAATGTGACATGCACATATTCACAGTTCCTGGCTCAGAAAGCTCCTACTTGCTGTGTCTCGTTGTCTTCCTTCTACAATGACACAGTAGTTCCCTGCCCGACATGTTCGTGTGGCTGCCAAAACAACATAACTCATCCTGGAAGCTGTGTAGTGCCAGAGTCTCCGTATTTGGCTTCAGTTGTTTCAGCTGCTGATAAGAATTCACCTTTGGTTAGATGTACTAGCCATATGTGCCCTATCAGAGTTCATTGGCACGTCAAGCTGAATTACAAGGAATACTGGCGAGTGAAGGTCACAATTACAAACTTTGATTACAGGAGGAATTATTCTGATTGGAACTTGGTTGCCCAACACCCAAATTTTGACAATCTTACCCAAATTTTCAGCTTCAACGCAAAGTCCTTGACTCCTTATGGAACCATAAGTATGTTGTCCTCACTGTTTCTTTGTTTGCAATGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

364

Amino Acids

40.51

Weight (kDa)

8.96

Isoelectric Point (pI)

27.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 54 - 217 4.9e-67 COBRA-like protein
COB_C PF25079 226 - 354 5.7e-37 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AciI CCGC 1 cut(s) 98
AclWI GGATC 4 cut(s) 89, 98, 428, 441
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 5 cut(s) 305, 581, 829, 988, 1008
AcuI CTGAAG 1 cut(s) 789
AfaI GTAC 3 cut(s) 377, 545, 850
AfiI CCNNNNNNNGG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 731
AgsI TTSAA 4 cut(s) 209, 303, 461, 1021
AjiI CACGTC 1 cut(s) 886
AjnI CCWGG 6 cut(s) 214, 364, 532, 538, 657, 766
AjuI GAANNNNNNNTTGG 2 cut(s) 821, 853
Alw21I GWGCWC 1 cut(s) 422
Alw26I GTCTC 3 cut(s) 613, 691, 795
AlwI GGATC 4 cut(s) 89, 98, 428, 441
AlwNI CAGNNNCTG 2 cut(s) 658, 821
AoxI GGCC 2 cut(s) 33, 536
ApeKI GCWGC 4 cut(s) 66, 330, 744, 818
ApoI RAATTY 5 cut(s) 305, 581, 829, 988, 1008
AspS9I GGNCC 3 cut(s) 147, 530, 536
AsuHPI GGTGA 3 cut(s) 67, 305, 825
AvaII GGWCC 2 cut(s) 147, 530
BaeGI GKGCMC 1 cut(s) 866
BaeI ACNNNNGTAYC 2 cut(s) 535, 568
BalI TGGCCA 1 cut(s) 35
BamHI GGATCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 1 cut(s) 422
BbvI GCAGC 4 cut(s) 78, 317, 731, 805
BccI CCATC 3 cut(s) 149, 225, 445
BceAI ACGGC 1 cut(s) 152
BciT130I CCWGG 6 cut(s) 216, 366, 534, 540, 659, 768
BciVI GTATCC 1 cut(s) 420
BcoDI GTCTC 3 cut(s) 613, 691, 795
BfaI CTAG 1 cut(s) 852
BfmI CTRYAG 2 cut(s) 64, 447
BfuI GTATCC 1 cut(s) 420
BisI GCNGC 4 cut(s) 67, 331, 745, 819
BlpI GCTNAGC 1 cut(s) 416
BlsI GCNGC 4 cut(s) 68, 332, 746, 820
Bme1390I CCNGG 6 cut(s) 216, 366, 534, 540, 659, 768
Bme18I GGWCC 2 cut(s) 147, 530
BmgBI CACGTC 1 cut(s) 886
BmgT120I GGNCC 3 cut(s) 147, 530, 536
BmiI GGNNCC 5 cut(s) 149, 370, 435, 531, 1048
BmrFI CCNGG 6 cut(s) 216, 366, 534, 540, 659, 768
BmsI GCATC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 687
Bpu1102I GCTNAGC 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 597
BsaJI CCNNGG 3 cut(s) 364, 533, 539
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse1I ACTGG 2 cut(s) 27, 914
Bse3DI GCAATG 2 cut(s) 325, 1091
BseBI CCWGG 6 cut(s) 216, 366, 534, 540, 659, 768
BseDI CCNNGG 3 cut(s) 364, 533, 539
BseGI GGATG 3 cut(s) 236, 437, 763
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMI GCAATG 2 cut(s) 325, 1091
BseMII CTCAG 2 cut(s) 407, 677
BseNI ACTGG 2 cut(s) 27, 914
BseSI GKGCMC 1 cut(s) 866
BseXI GCAGC 4 cut(s) 78, 317, 731, 805
BshFI GGCC 2 cut(s) 35, 538
BsiHKAI GWGCWC 1 cut(s) 422
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 1 cut(s) 539
BsmAI GTCTC 3 cut(s) 613, 691, 795
BsmFI GGGAC 1 cut(s) 543
BsnI GGCC 2 cut(s) 35, 538
Bsp1286I GDGCHC 2 cut(s) 422, 866
Bsp143I GATC 6 cut(s) 94, 103, 286, 355, 433, 476
Bsp1720I GCTNAGC 1 cut(s) 416
BspACI CCGC 1 cut(s) 98
BspANI GGCC 2 cut(s) 35, 538
BspCNI CTCAG 2 cut(s) 408, 676
BspLI GGNNCC 5 cut(s) 149, 370, 435, 531, 1048
BspMAI CTGCAG 1 cut(s) 68
BspPI GGATC 4 cut(s) 89, 98, 428, 441
BsrDI GCAATG 2 cut(s) 325, 1091
BsrI ACTGG 2 cut(s) 27, 914
BssECI CCNNGG 3 cut(s) 364, 533, 539
BssMI GATC 6 cut(s) 94, 103, 286, 355, 433, 476
Bst2UI CCWGG 6 cut(s) 216, 366, 534, 540, 659, 768
Bst4CI ACNGT 5 cut(s) 40, 499, 654, 715, 1071
Bst6I CTCTTC 1 cut(s) 598
BstDEI CTNAG 2 cut(s) 416, 663
BstF5I GGATG 3 cut(s) 236, 437, 763
BstKTI GATC 6 cut(s) 97, 106, 289, 358, 436, 479
BstMAI GTCTC 3 cut(s) 613, 691, 795
BstMBI GATC 6 cut(s) 94, 103, 286, 355, 433, 476
BstMWI GCNNNNNNNGC 3 cut(s) 668, 861, 889
BstNI CCWGG 6 cut(s) 216, 366, 534, 540, 659, 768
BstNSI RCATGY 2 cut(s) 642, 735
BstSCI CCNGG 6 cut(s) 214, 364, 532, 538, 657, 766
BstSFI CTRYAG 2 cut(s) 64, 447
BstSLI GKGCMC 1 cut(s) 866
BstV1I GCAGC 4 cut(s) 78, 317, 731, 805
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuI GTATCC 1 cut(s) 420
BsuRI GGCC 2 cut(s) 35, 538
BtrI CACGTC 1 cut(s) 886
BtsCI GGATG 3 cut(s) 236, 437, 763
BtsIMutI CAGTG 2 cut(s) 36, 1067
CaiI CAGNNNCTG 2 cut(s) 658, 821
Cfr13I GGNCC 3 cut(s) 147, 530, 536
CseI GACGC 1 cut(s) 232
Csp6I GTAC 3 cut(s) 376, 544, 849
CviAII CATG 6 cut(s) 237, 265, 423, 627, 639, 732
CviQI GTAC 3 cut(s) 376, 544, 849
DdeI CTNAG 2 cut(s) 416, 663
DpnI GATC 6 cut(s) 96, 105, 288, 357, 435, 478
DpnII GATC 6 cut(s) 94, 103, 286, 355, 433, 476
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 598
EarI CTCTTC 1 cut(s) 598
Ecl136II GAGCTC 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 422
Eco47I GGWCC 2 cut(s) 147, 530
Eco53kI GAGCTC 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 789
EcoICRI GAGCTC 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 530
EcoRI GAATTC 1 cut(s) 829
EcoRII CCWGG 6 cut(s) 214, 364, 532, 538, 657, 766
EcoT22I ATGCAT 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 422
FaeI CATG 6 cut(s) 240, 268, 426, 630, 642, 735
FaqI GGGAC 1 cut(s) 543
FatI CATG 6 cut(s) 236, 264, 422, 626, 638, 731
FauNDI CATATG 2 cut(s) 91, 858
Fnu4HI GCNGC 4 cut(s) 67, 331, 745, 819
FokI GGATG 3 cut(s) 243, 424, 750
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 4 cut(s) 67, 331, 745, 819
FspBI CTAG 1 cut(s) 852
GluI GCNGC 4 cut(s) 67, 331, 745, 819
HaeIII GGCC 2 cut(s) 35, 538
HgaI GACGC 1 cut(s) 232
Hin1II CATG 6 cut(s) 240, 268, 426, 630, 642, 735
HinfI GANTC 3 cut(s) 606, 788, 1036
HphI GGTGA 3 cut(s) 67, 305, 825
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 4 cut(s) 510, 666, 872, 961
Hpy188III TCNNGA 1 cut(s) 480
Hpy8I GTNNAC 1 cut(s) 546
HpyAV CCTTC 3 cut(s) 241, 709, 913
HpyCH4III ACNGT 5 cut(s) 40, 499, 654, 715, 1071
HpyCH4IV ACGT 1 cut(s) 885
HpyCH4V TGCA 6 cut(s) 66, 89, 333, 560, 642, 1084
HpyF10VI GCNNNNNNNGC 3 cut(s) 668, 861, 889
HpyF3I CTNAG 2 cut(s) 416, 663
HpySE526I ACGT 1 cut(s) 885
Hsp92II CATG 6 cut(s) 240, 268, 426, 630, 642, 735
Kzo9I GATC 6 cut(s) 94, 103, 286, 355, 433, 476
LmnI GCTCC 1 cut(s) 676
Lsp1109I GCAGC 4 cut(s) 78, 317, 731, 805
LweI GCATC 1 cut(s) 76
MaeI CTAG 1 cut(s) 852
MaeII ACGT 1 cut(s) 885
MaeIII GTNAC 2 cut(s) 634, 922
MalI GATC 6 cut(s) 96, 105, 288, 357, 435, 478
MboI GATC 6 cut(s) 94, 103, 286, 355, 433, 476
MboII GAAGA 3 cut(s) 64, 615, 687
MfeI CAATTG 1 cut(s) 394
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 2 cut(s) 422, 866
MlsI TGGCCA 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 3 cut(s) 615, 797, 1030
MnlI CCTC 6 cut(s) 88, 244, 266, 398, 942, 1075
Mox20I TGGCCA 1 cut(s) 35
Mph1103I ATGCAT 1 cut(s) 91
MscI TGGCCA 1 cut(s) 35
MseI TTAA 4 cut(s) 126, 183, 309, 570
MslI CAYNNNNRTG 2 cut(s) 736, 1055
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 2 cut(s) 593, 818
MspR9I CCNGG 6 cut(s) 216, 366, 534, 540, 659, 768
MunI CAATTG 1 cut(s) 394
MvaI CCWGG 6 cut(s) 216, 366, 534, 540, 659, 768
MwoI GCNNNNNNNGC 3 cut(s) 668, 861, 889
NdeI CATATG 2 cut(s) 91, 858
NdeII GATC 6 cut(s) 94, 103, 286, 355, 433, 476
NlaIII CATG 6 cut(s) 240, 268, 426, 630, 642, 735
NlaIV GGNNCC 5 cut(s) 149, 370, 435, 531, 1048
NmuCI GTSAC 2 cut(s) 634, 922
NsiI ATGCAT 1 cut(s) 91
NspI RCATGY 2 cut(s) 642, 735
PciI ACATGT 1 cut(s) 731
PfoI TCCNGGA 1 cut(s) 766
PkrI GCNGC 4 cut(s) 68, 332, 746, 820
PleI GAGTC 3 cut(s) 614, 796, 1030
PpsI GAGTC 3 cut(s) 614, 796, 1030
PpuMI RGGWCCY 1 cut(s) 530
PscI ACATGT 1 cut(s) 731
PsiI TTATAA 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 422
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 6 cut(s) 214, 364, 532, 538, 657, 766
PspGI CCWGG 6 cut(s) 214, 364, 532, 538, 657, 766
PspN4I GGNNCC 5 cut(s) 149, 370, 435, 531, 1048
PspPI GGNCC 3 cut(s) 147, 530, 536
PspPPI RGGWCCY 1 cut(s) 530
PstI CTGCAG 1 cut(s) 68
PstNI CAGNNNCTG 2 cut(s) 658, 821
PsuI RGATCY 1 cut(s) 433
PvuII CAGCTG 2 cut(s) 593, 818
RsaI GTAC 3 cut(s) 377, 545, 850
RsaNI GTAC 3 cut(s) 376, 544, 849
RseI CAYNNNNRTG 2 cut(s) 736, 1055
SacI GAGCTC 1 cut(s) 422
SaqAI TTAA 4 cut(s) 126, 183, 309, 570
SatI GCNGC 4 cut(s) 67, 331, 745, 819
Sau3AI GATC 6 cut(s) 94, 103, 286, 355, 433, 476
Sau96I GGNCC 3 cut(s) 147, 530, 536
SchI GAGTC 3 cut(s) 615, 797, 1030
ScrFI CCNGG 6 cut(s) 216, 366, 534, 540, 659, 768
SduI GDGCHC 2 cut(s) 422, 866
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 2 cut(s) 64, 447
SinI GGWCC 2 cut(s) 147, 530
SmiMI CAYNNNNRTG 2 cut(s) 736, 1055
SmlI CTYRAG 1 cut(s) 612
SmoI CTYRAG 1 cut(s) 612
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 852
SstI GAGCTC 1 cut(s) 422
StyD4I CCNGG 6 cut(s) 214, 364, 532, 538, 657, 766
TaaI ACNGT 5 cut(s) 40, 499, 654, 715, 1071
TaiI ACGT 1 cut(s) 888
TaqI TCGA 1 cut(s) 475
TatI WGTACW 1 cut(s) 848
Tru1I TTAA 4 cut(s) 126, 183, 309, 570
Tru9I TTAA 4 cut(s) 126, 183, 309, 570
TscAI CASTG 2 cut(s) 43, 1074
TseFI GTSAC 2 cut(s) 634, 922
TseI GCWGC 4 cut(s) 66, 330, 744, 818
Tsp45I GTSAC 2 cut(s) 634, 922
TspDTI ATGAA 1 cut(s) 866
TspGWI ACGGA 1 cut(s) 783
TspRI CASTG 2 cut(s) 43, 1074
VpaK11BI GGWCC 2 cut(s) 147, 530
XapI RAATTY 5 cut(s) 305, 581, 829, 988, 1008
XceI RCATGY 2 cut(s) 642, 735
XspI CTAG 1 cut(s) 852
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.