AT3G29810

cobra-like protein 2

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
11728024 .. 11730350
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29810.1

Sequence Viewer

Length: 1326 bp
ATGAACATTCTCTTCTCCAGATTCTCCTTTTTGCTTCTGTTTCTCTGTTCTTGGACCAGTTTCACTTTCACCACAACAGAAGCTTATGATGCACTTGATCCATATGGAAACATTACTATAAAATGGGATATTATGAGCTGGACTGGTGATGGTTATGTGGCTGTTGTAACAATCTTTAATTTCCAACAATACCGTCACATTGAGGCGCCGGGGTGGCAATTAGGATGGAGTTGGATGAAGAAGGAAGTAATTTGGAGTATGGTTGGTGGTCAAGCAACAGAACAAGGAGATTGTTCTAAGTTTAAGGGTAACATTCCTCATTGCTGCAAGAAAACTCCGGCTATCGTTGATTTGTTACCGGGAACTCCTTATAACCAACAGATATCAAACTGTTGTAGAGGCGGTGTGATTAGCGCGTGGGCGCAAGACCCCGCAACCGCGATTTCTTCGTTTCAGATTAGTGTTGGCCAGTCTGGAACAACTAATACTACGGTTAGAGCACCTAGGAATATAACTTTGAAGGCTCCAGGACCTGGTTACACTTGCGGGCCTGCAAAACTCGTTAAGCCGAGTAGATTCATTTCCGCGGATAAACGAAGAAAGACTCAGTCTTTGCTTACATGGAACATTACTTGCACATATTCGCAGTTTCTAGCACGGAAAACTCCGACTTGTTGTGTCTCACTCTCAGCCTTCTACAATGAAACTATAGTACCATGTCCAACTTGTTCTTGTGGATGTCAAAATAGTTCTCAAGCTGGTACATGTGTTGACCCTAAAATAGCTTCAGTAGTACCAGCCTTAGGGAAGAACAACCTCGAACCTCTCTTGCAATGTACGCAACATATGTGTCCCATTCGAGTTCATTGGCATGTAAAAACTAGCTACAAAGAGTACTGGAGAGTGAAGGTTGCCATCACAAACTTTAACTACAATATGAACTACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAATGACACGGCCATGCTATGGGGAATCAAGTTCTACAATGATTTTTTAAGCCAAGCTGGTCCAGTAGGCAATGTACAGTCAGAGCTTCTCTTCCAAAAGAACCCATTGGAGTTCACATTCGAGAAAGGATGGGCGTTTCCGAGGCGCATATACTTCAACGGTGATAACTGCGTTATGCCACCTCCAGACTCTTATCCATGGCTTCCAAACGCTAGTCCAAACATTGCAACCTCGCCATTTGTCATACTTCTCATCACTTTCTTATCTGTTTTGATTCTTATGTAA

Protein Analysis

441

Amino Acids

49.7

Weight (kDa)

8.91

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 52 - 215 4e-68 COBRA-like protein
COB_C PF25079 224 - 413 4.3e-55 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 205
AccB7I CCANNNNNTGG 2 cut(s) 533, 1059
AccII CGCG 3 cut(s) 416, 440, 587
AciI CCGC 7 cut(s) 402, 432, 438, 546, 585, 587, 1019
AclWI GGATC 1 cut(s) 92
AcoI YGGCCR 2 cut(s) 466, 1050
AcuI CTGAAG 1 cut(s) 771
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 6 cut(s) 714, 763, 795, 838, 896, 1116
AfiI CCNNNNNNNGG 3 cut(s) 533, 803, 1059
AflIII ACRYGT 1 cut(s) 764
AgsI TTSAA 4 cut(s) 520, 1009, 1036, 1198
AjnI CCWGG 2 cut(s) 526, 532
AluBI AGCT 8 cut(s) 83, 138, 758, 785, 885, 997, 1097, 1126
AluI AGCT 8 cut(s) 83, 138, 758, 785, 885, 997, 1097, 1126
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 1 cut(s) 685
AlwI GGATC 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 533
AoxI GGCC 3 cut(s) 466, 548, 1050
ApeKI GCWGC 1 cut(s) 324
ArsI GACNNNNNNTTYG 2 cut(s) 595, 627
AspA2I CCTAGG 1 cut(s) 503
AspLEI GCGC 4 cut(s) 208, 416, 424, 1188
AspS9I GGNCC 4 cut(s) 54, 530, 548, 1100
AsuC2I CCSGG 2 cut(s) 210, 360
AsuHPI GGTGA 3 cut(s) 61, 158, 1214
AvaII GGWCC 3 cut(s) 54, 530, 1100
AvrII CCTAGG 1 cut(s) 503
AxyI CCTNAGG 1 cut(s) 802
BaeI ACNNNNGTAYC 4 cut(s) 696, 729, 753, 786
BalI TGGCCA 1 cut(s) 468
BanI GGYRCC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 502
BbvI GCAGC 1 cut(s) 311
BccI CCATC 4 cut(s) 143, 219, 923, 1164
BceAI ACGGC 1 cut(s) 1065
BciT130I CCWGG 2 cut(s) 528, 534
BcnI CCSGG 2 cut(s) 210, 360
BcoDI GTCTC 1 cut(s) 685
BfaI CTAG 4 cut(s) 504, 653, 882, 1254
BfmI CTRYAG 1 cut(s) 708
BfoI RGCGCY 1 cut(s) 209
BglI GCCNNNNNGGC 1 cut(s) 214
BisI GCNGC 1 cut(s) 325
BlnI CCTAGG 1 cut(s) 503
BlsI GCNGC 1 cut(s) 326
BmcAI AGTACT 1 cut(s) 896
Bme1390I CCNGG 4 cut(s) 210, 360, 528, 534
Bme18I GGWCC 3 cut(s) 54, 530, 1100
BmgT120I GGNCC 4 cut(s) 54, 530, 548, 1100
BmiI GGNNCC 2 cut(s) 207, 525
BmrFI CCNGG 4 cut(s) 210, 360, 528, 534
BmsI GCATC 2 cut(s) 79, 979
BpmI CTGGAG 3 cut(s) 510, 919, 1209
BpuEI CTTGAG 1 cut(s) 738
BpuMI CCSGG 2 cut(s) 210, 360
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 5 cut(s) 209, 503, 585, 1181, 1238
Bsc4I CCNNNNNNNGG 3 cut(s) 533, 803, 1059
Bse1I ACTGG 5 cut(s) 57, 148, 469, 902, 1103
Bse21I CCTNAGG 1 cut(s) 802
Bse3DI GCAATG 4 cut(s) 319, 839, 1117, 1263
BseBI CCWGG 2 cut(s) 528, 534
BseDI CCNNGG 5 cut(s) 209, 503, 585, 1181, 1238
BseGI GGATG 5 cut(s) 230, 240, 743, 970, 1175
BseLI CCNNNNNNNGG 3 cut(s) 533, 803, 1059
BseMI GCAATG 4 cut(s) 319, 839, 1117, 1263
BseMII CTCAG 3 cut(s) 620, 702, 962
BseNI ACTGG 5 cut(s) 57, 148, 469, 902, 1103
BseXI GCAGC 1 cut(s) 311
Bsh1236I CGCG 3 cut(s) 416, 440, 587
BshFI GGCC 3 cut(s) 468, 550, 1052
BshNI GGYRCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 502
BsiSI CCGG 3 cut(s) 209, 338, 359
BslFI GGGAC 1 cut(s) 837
BslI CCNNNNNNNGG 3 cut(s) 533, 803, 1059
BsmAI GTCTC 1 cut(s) 685
BsmFI GGGAC 1 cut(s) 837
BsnI GGCC 3 cut(s) 468, 550, 1052
Bsp1286I GDGCHC 1 cut(s) 502
Bsp1407I TGTACA 1 cut(s) 1114
Bsp143I GATC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 1238
BspACI CCGC 7 cut(s) 402, 432, 438, 546, 585, 587, 1019
BspANI GGCC 3 cut(s) 468, 550, 1052
BspCNI CTCAG 3 cut(s) 619, 701, 961
BspFNI CGCG 3 cut(s) 416, 440, 587
BspLI GGNNCC 2 cut(s) 207, 525
BspPI GGATC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 205
BsrDI GCAATG 4 cut(s) 319, 839, 1117, 1263
BsrGI TGTACA 1 cut(s) 1114
BsrI ACTGG 5 cut(s) 57, 148, 469, 902, 1103
BssECI CCNNGG 5 cut(s) 209, 503, 585, 1181, 1238
BssMI GATC 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 2 cut(s) 503, 1238
Bst2UI CCWGG 2 cut(s) 528, 534
Bst4CI ACNGT 5 cut(s) 194, 392, 493, 1119, 1202
Bst6I CTCTTC 2 cut(s) 17, 1136
BstACI GRCGYC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 1114
BstC8I GCNNGC 2 cut(s) 548, 552
BstDEI CTNAG 7 cut(s) 297, 606, 688, 802, 948, 958, 993
BstDSI CCRYGG 2 cut(s) 585, 1238
BstF5I GGATG 5 cut(s) 230, 240, 743, 970, 1175
BstFNI CGCG 3 cut(s) 416, 440, 587
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 4 cut(s) 208, 416, 424, 1188
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 3 cut(s) 89, 214, 838
BstNI CCWGG 2 cut(s) 528, 534
BstNSI RCATGY 2 cut(s) 768, 875
BstSCI CCNGG 4 cut(s) 208, 358, 526, 532
BstSFI CTRYAG 1 cut(s) 708
BstUI CGCG 3 cut(s) 416, 440, 587
BstV1I GCAGC 1 cut(s) 311
Bsu36I CCTNAGG 1 cut(s) 802
BsuRI GGCC 3 cut(s) 468, 550, 1052
BtgI CCRYGG 2 cut(s) 585, 1238
BtsCI GGATG 5 cut(s) 230, 240, 743, 970, 1175
BtsIMutI CAGTG 1 cut(s) 956
Cac8I GCNNGC 2 cut(s) 548, 552
CaiI CAGNNNCTG 1 cut(s) 533
CfoI GCGC 4 cut(s) 208, 416, 424, 1188
Cfr13I GGNCC 4 cut(s) 54, 530, 548, 1100
Cfr42I CCGCGG 1 cut(s) 588
CsiI ACCWGGT 1 cut(s) 532
Csp6I GTAC 6 cut(s) 713, 762, 794, 837, 895, 1115
CviAII CATG 6 cut(s) 621, 717, 765, 872, 1054, 1239
CviQI GTAC 6 cut(s) 713, 762, 794, 837, 895, 1115
DdeI CTNAG 7 cut(s) 297, 606, 688, 802, 948, 958, 993
DinI GGCGCC 1 cut(s) 207
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
EaeI YGGCCR 2 cut(s) 466, 1050
Eam1104I CTCTTC 2 cut(s) 17, 1136
EarI CTCTTC 2 cut(s) 17, 1136
Eco130I CCWWGG 2 cut(s) 503, 1238
Eco32I GATATC 1 cut(s) 384
Eco47I GGWCC 3 cut(s) 54, 530, 1100
Eco57I CTGAAG 1 cut(s) 771
Eco81I CCTNAGG 1 cut(s) 802
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 526, 532
EcoRV GATATC 1 cut(s) 384
EcoT14I CCWWGG 2 cut(s) 503, 1238
EgeI GGCGCC 1 cut(s) 207
EheI GGCGCC 1 cut(s) 207
ErhI CCWWGG 2 cut(s) 503, 1238
FaeI CATG 6 cut(s) 624, 720, 768, 875, 1057, 1242
FaqI GGGAC 1 cut(s) 837
FatI CATG 6 cut(s) 620, 716, 764, 871, 1053, 1238
FauI CCCGC 2 cut(s) 439, 539
FauNDI CATATG 2 cut(s) 103, 846
Fnu4HI GCNGC 1 cut(s) 325
FokI GGATG 5 cut(s) 237, 247, 750, 957, 1182
Fsp4HI GCNGC 1 cut(s) 325
FspBI CTAG 4 cut(s) 504, 653, 882, 1254
GlaI GCGC 4 cut(s) 207, 415, 423, 1187
GluI GCNGC 1 cut(s) 325
GsuI CTGGAG 3 cut(s) 510, 919, 1209
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 3 cut(s) 468, 550, 1052
HapII CCGG 3 cut(s) 209, 338, 359
HhaI GCGC 4 cut(s) 208, 416, 424, 1188
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 6 cut(s) 624, 720, 768, 875, 1057, 1242
Hin6I GCGC 4 cut(s) 206, 414, 422, 1186
HinP1I GCGC 4 cut(s) 206, 414, 422, 1186
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 2 cut(s) 81, 995
HinfI GANTC 6 cut(s) 21, 576, 604, 1065, 1229, 1315
HpaII CCGG 3 cut(s) 209, 338, 359
HphI GGTGA 3 cut(s) 61, 158, 1214
Hpy166II GTNNAC 2 cut(s) 772, 1155
Hpy188I TCNGA 4 cut(s) 456, 669, 1123, 1182
Hpy188III TCNNGA 4 cut(s) 18, 474, 1162, 1226
Hpy8I GTNNAC 2 cut(s) 772, 1155
HpyAV CCTTC 4 cut(s) 235, 514, 703, 901
HpyCH4III ACNGT 5 cut(s) 194, 392, 493, 1119, 1202
HpyCH4V TGCA 6 cut(s) 92, 327, 554, 636, 832, 1268
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 214, 838
HpyF3I CTNAG 7 cut(s) 297, 606, 688, 802, 948, 958, 993
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 6 cut(s) 624, 720, 768, 875, 1057, 1242
HspAI GCGC 4 cut(s) 206, 414, 422, 1186
KasI GGCGCC 1 cut(s) 205
KspI CCGCGG 1 cut(s) 588
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 529
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 2 cut(s) 79, 979
MabI ACCWGGT 1 cut(s) 532
MaeI CTAG 4 cut(s) 504, 653, 882, 1254
MaeIII GTNAC 5 cut(s) 166, 194, 308, 354, 536
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 6 cut(s) 4, 250, 438, 609, 820, 1123
MhlI GDGCHC 1 cut(s) 502
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 3 cut(s) 178, 218, 249
MluNI TGGCCA 1 cut(s) 468
Mly113I GGCGCC 1 cut(s) 206
MlyI GAGTC 2 cut(s) 598, 1223
MmeI TCCRAC 4 cut(s) 208, 212, 692, 746
MnlI CCTC 8 cut(s) 196, 327, 392, 827, 834, 1176, 1233, 1282
Mox20I TGGCCA 1 cut(s) 468
MscI TGGCCA 1 cut(s) 468
MseI TTAA 6 cut(s) 177, 303, 564, 927, 1023, 1088
MslI CAYNNNNRTG 2 cut(s) 870, 1052
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 3 cut(s) 209, 338, 359
MspR9I CCNGG 4 cut(s) 210, 360, 528, 534
MvaI CCWGG 2 cut(s) 528, 534
MvnI CGCG 3 cut(s) 416, 440, 587
MwoI GCNNNNNNNGC 3 cut(s) 89, 214, 838
NarI GGCGCC 1 cut(s) 206
NciI CCSGG 2 cut(s) 210, 360
NcoI CCATGG 1 cut(s) 1238
NdeI CATATG 2 cut(s) 103, 846
NdeII GATC 1 cut(s) 97
NlaIII CATG 6 cut(s) 624, 720, 768, 875, 1057, 1242
NlaIV GGNNCC 2 cut(s) 207, 525
NmeAIII GCCGAG 1 cut(s) 594
NmuCI GTSAC 1 cut(s) 194
NspI RCATGY 2 cut(s) 768, 875
PciI ACATGT 1 cut(s) 764
PfeI GAWTC 4 cut(s) 21, 576, 1065, 1315
PflFI GACNNNGTC 1 cut(s) 607
PflMI CCANNNNNTGG 2 cut(s) 533, 1059
PfoI TCCNGGA 1 cut(s) 526
PkrI GCNGC 1 cut(s) 326
PleI GAGTC 2 cut(s) 598, 1223
PluTI GGCGCC 1 cut(s) 209
PpsI GAGTC 2 cut(s) 598, 1223
PpuMI RGGWCCY 1 cut(s) 530
PscI ACATGT 1 cut(s) 764
PsiI TTATAA 1 cut(s) 372
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 2 cut(s) 526, 532
PspGI CCWGG 2 cut(s) 526, 532
PspN4I GGNNCC 2 cut(s) 207, 525
PspPI GGNCC 4 cut(s) 54, 530, 548, 1100
PspPPI RGGWCCY 1 cut(s) 530
PsrI GAACNNNNNNTAC 2 cut(s) 469, 501
PstNI CAGNNNCTG 1 cut(s) 533
PsyI GACNNNGTC 1 cut(s) 607
RsaI GTAC 6 cut(s) 714, 763, 795, 838, 896, 1116
RsaNI GTAC 6 cut(s) 713, 762, 794, 837, 895, 1115
RseI CAYNNNNRTG 2 cut(s) 870, 1052
SacII CCGCGG 1 cut(s) 588
SaqAI TTAA 6 cut(s) 177, 303, 564, 927, 1023, 1088
SatI GCNGC 1 cut(s) 325
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 4 cut(s) 54, 530, 548, 1100
ScaI AGTACT 1 cut(s) 896
SchI GAGTC 2 cut(s) 598, 1223
ScrFI CCNGG 4 cut(s) 210, 360, 528, 534
SduI GDGCHC 1 cut(s) 502
SexAI ACCWGGT 1 cut(s) 532
SfaNI GCATC 2 cut(s) 79, 979
SfcI CTRYAG 1 cut(s) 708
SfoI GGCGCC 1 cut(s) 207
Sfr303I CCGCGG 1 cut(s) 588
SgrBI CCGCGG 1 cut(s) 588
SinI GGWCC 3 cut(s) 54, 530, 1100
SmiMI CAYNNNNRTG 2 cut(s) 870, 1052
SmlI CTYRAG 1 cut(s) 753
SmoI CTYRAG 1 cut(s) 753
Sse9I AATT 3 cut(s) 178, 218, 249
SsiI CCGC 7 cut(s) 402, 432, 438, 546, 585, 587, 1019
SspDI GGCGCC 1 cut(s) 205
SspMI CTAG 4 cut(s) 504, 653, 882, 1254
StyD4I CCNGG 4 cut(s) 208, 358, 526, 532
StyI CCWWGG 2 cut(s) 503, 1238
TaaI ACNGT 5 cut(s) 194, 392, 493, 1119, 1202
TaqI TCGA 4 cut(s) 819, 859, 981, 1161
TasI AATT 3 cut(s) 178, 218, 249
TatI WGTACW 2 cut(s) 894, 1114
TfiI GAWTC 4 cut(s) 21, 576, 1065, 1315
Tru1I TTAA 6 cut(s) 177, 303, 564, 927, 1023, 1088
Tru9I TTAA 6 cut(s) 177, 303, 564, 927, 1023, 1088
TscAI CASTG 1 cut(s) 956
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 324
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 6 cut(s) 17, 251, 568, 717, 854, 953
TspGWI ACGGA 1 cut(s) 673
TspRI CASTG 1 cut(s) 956
Tth111I GACNNNGTC 1 cut(s) 607
Van91I CCANNNNNTGG 2 cut(s) 533, 1059
VpaK11BI GGWCC 3 cut(s) 54, 530, 1100
XceI RCATGY 2 cut(s) 768, 875
XmaJI CCTAGG 1 cut(s) 503
XspI CTAG 4 cut(s) 504, 653, 882, 1254
ZrmI AGTACT 1 cut(s) 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.