Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004894

Physical Location & Seq

Genomic Coordinates Reverse (-)

24011142 .. 24014824

Gene Structure 3683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G250400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGGGCCTCTGTTCCTACCCATGATTCGATCAGTCTCAAAATTTATCAGTTTCACCATTTTGCTTCTCTTTGGACTTGCTTGTACCAGCTTCACTGCTACAGAAGCATATGATCCGCTTGACCCCAGTGGAAATATCACAATCAAATGGGATATTATAAGCTGGACTCCTGATGGCTATGTTGCTGTTGTTACCATCTATAACTTCCAGAAATATCGGCACATTCAAGCACCAGGCTGGTCACTGGGATGGACATGGGCAAAGAAGGAGGTTATATGGAACATGGTAGGAGGACAAGCCACAGAGCAAGGGGATTGTTCAAAATTTAAAACAACAATCCCACACTGCTGTAAAAAGAACCCAACTGTTGTTGATTTATTGCCAGGAACTCCTTACAATCAACAAATTACAAATTGTTGCAAAGGAGGAGTACTTGCTTCATGGGTGCAGGATCCAGCCAATGCTGTGGGGTCTTTTCAACTAAGTGTTGGTCAAGCAGGAACCACTAATAAGACGGTCAGAGCTCCTAAAAATTTGACCCTGAATGCACCAGGGCCTGGGTATACTTGTGGTCGCGCAAATATCGTCAAACCAACTAAATTTGTCACTGCAGATAAACGGAGAGTCACTCAAGCTATGATGACATGGAATGTTACGTGCACATATTCGCAATTCCTGGCTCAGACAACTCCCACTTGCTGTGTCTCACTCTCATCCTTCTACAATGACACAGTAGTGCCCTGCCCAGCATGTTCGTGTGGCTGCCAAAGTAATGCAACTCATCCAGGAAGCTGTGTAGAGCCAGATTCCCCCTATTTGGCTTCAGTTGTCTCAGCCTCTAGCAAGAATAGCTACATGCCTCTGGTTCGATGCACTAACCATATGTGCCCAATCCGAGTTCACTGGCATGTCAAGCTAAACTACAAGGAATATTGGCGAGTGAAAGTTACAGTTACAAACTTCAATTACAGGATGAATTACTCGGATTGGAATTTAGTTGTCCAACACCCAAACTTTGACAATCTGACGCAGAGTTTCAGCTTTAACTACAAGTCAATAACTCCTTATGCGACAATAAATGATACAGCCATGCTATGGGGACTTAAGTTCTACAACGATTTGCTGATGCAAGCTGGGCCTCTTGGTAATGTACAGTCAGAGCTGCTTTTCCAGAAGGATCAAGCAACTTTCACATTTGATAAGGGTTGGGCTTTCCCTCGAAGGATCTATTTCAATGGCGATAACTGTGTCATGCCACCTCCTGATGCCTATCCATGGTTGCCAAACTCTGGTTTCCGACAGTATACCTCTCTGCTTACTCTAATCATGACTTCTCTATCAACAGCTGCACTCATGTATGTTCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

457

Amino Acids

50.96

Weight (kDa)

8.89

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02210 AT3G29810
fragaria_vesca	FvH4_6g46460 FvH4_6g46530
malus_domestica	MD09G1072800.v1.1 MD17G1064200.v1.1
prunus_persica	Prupe.3G250400_v2.0.a1 Prupe.3G250400_v2.0.a1
pyrus_communis	pycom12433g00030 pycom17g06430
rosa_chinensis	RchiOBHm_Chr2g0153051 RchiOBHm_Chr2g0165011 RchiOBHm_Chr2g0165171 RchiOBHm_Chr5g0001191
rosa_multiflora	Rmu_sc0001097.1_g000020 Rmu_sc0001097.1_g000043
rosa_roxburghii	Rroxscaffold_2G00085970 Rroxscaffold_2G00086120
rosa_rugosa	Rorug02G0512200 Rorug02G0512300 Rorug02G0512900
rosa_samantha	Rh2AG580300 Rh2AG581100 Rh2BG591600 Rh2BG592400 Rh2CG562100 Rh2CG563100 Rh2DG601700 Rh2DG602400
rosa_wichuraiana	Rw2G048170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
AccB7I	CCANNNNNTGG	3 cut(s)	557, 1095, 1289
AccI	GTMKAC	2 cut(s)	563, 1304
AccII	CGCG	1 cut(s)	576
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	5 cut(s)	107, 446, 459, 1185, 1232
AcsI	RAATTY	5 cut(s)	41, 323, 532, 599, 991
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	3 cut(s)	85, 432, 1152
AfiI	CCNNNNNNNGG	5 cut(s)	557, 817, 1095, 1275, 1289
AflII	CTTAAG	1 cut(s)	1103
AgsI	TTSAA	5 cut(s)	227, 321, 479, 964, 1234
AjnI	CCWGG	6 cut(s)	232, 382, 550, 556, 675, 784
AleI	CACNNNNGTG	1 cut(s)	734
Alw21I	GWGCWC	2 cut(s)	526, 662
Alw26I	GTCTC	3 cut(s)	40, 709, 835
Alw44I	GTGCAC	1 cut(s)	658
AlwI	GGATC	5 cut(s)	107, 446, 459, 1185, 1232
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	3 cut(s)	5, 554, 1136
ApaLI	GTGCAC	1 cut(s)	658
ApeKI	GCWGC	3 cut(s)	762, 1162, 1346
ApoI	RAATTY	5 cut(s)	41, 323, 532, 599, 991
AspLEI	GCGC	1 cut(s)	578
AspS9I	GGNCC	3 cut(s)	5, 554, 1136
AsuHPI	GGTGA	1 cut(s)	46
BaeGI	GKGCMC	3 cut(s)	662, 741, 890
BamHI	GGATCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	526
Bbv12I	GWGCWC	2 cut(s)	526, 662
BbvI	GCAGC	3 cut(s)	749, 1149, 1333
BccI	CCATC	3 cut(s)	167, 203, 243
BciT130I	CCWGG	6 cut(s)	234, 384, 552, 558, 677, 786
BcoDI	GTCTC	3 cut(s)	40, 709, 835
BfaI	CTAG	1 cut(s)	840
BfmI	CTRYAG	2 cut(s)	99, 609
BfrI	CTTAAG	1 cut(s)	1103
BisI	GCNGC	3 cut(s)	763, 1163, 1347
BlsI	GCNGC	3 cut(s)	764, 1164, 1348
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	6 cut(s)	234, 384, 552, 558, 677, 786
BmgT120I	GGNCC	3 cut(s)	5, 554, 1136
BmiI	GGNNCC	3 cut(s)	6, 453, 502
BmrFI	CCNGG	6 cut(s)	234, 384, 552, 558, 677, 786
BmrI	ACTGGG	2 cut(s)	120, 254
BmsI	GCATC	3 cut(s)	860, 1116, 1255
BmuI	ACTGGG	2 cut(s)	120, 254
BplI	GAGNNNNNCTC	2 cut(s)	613, 645
BpuEI	CTTGAG	1 cut(s)	615
BsaAI	YACGTR	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	1269
BsaJI	CCNNGG	3 cut(s)	551, 557, 1274
Bsc4I	CCNNNNNNNGG	5 cut(s)	557, 817, 1095, 1275, 1289
Bse1I	ACTGG	3 cut(s)	126, 249, 908
Bse8I	GATNNNNATC	1 cut(s)	1269
BseBI	CCWGG	6 cut(s)	234, 384, 552, 558, 677, 786
BseDI	CCNNGG	3 cut(s)	551, 557, 1274
BseGI	GGATG	4 cut(s)	254, 713, 781, 978
BseJI	GATNNNNATC	1 cut(s)	1269
BseLI	CCNNNNNNNGG	5 cut(s)	557, 817, 1095, 1275, 1289
BseMII	CTCAG	2 cut(s)	695, 846
BseNI	ACTGG	3 cut(s)	126, 249, 908
BseRI	GAGGAG	1 cut(s)	441
BseSI	GKGCMC	3 cut(s)	662, 741, 890
BseXI	GCAGC	3 cut(s)	749, 1149, 1333
BseYI	CCCAGC	2 cut(s)	745, 1133
BsgI	GTGCAG	2 cut(s)	467, 1332
Bsh1236I	CGCG	1 cut(s)	576
BshFI	GGCC	3 cut(s)	7, 556, 1138
BsiHKAI	GWGCWC	2 cut(s)	526, 662
BslFI	GGGAC	1 cut(s)	1113
BslI	CCNNNNNNNGG	5 cut(s)	557, 817, 1095, 1275, 1289
BsmAI	GTCTC	3 cut(s)	40, 709, 835
BsmFI	GGGAC	1 cut(s)	1113
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	3 cut(s)	7, 556, 1138
Bsp1286I	GDGCHC	4 cut(s)	526, 662, 741, 890
Bsp1407I	TGTACA	1 cut(s)	1150
Bsp143I	GATC	5 cut(s)	29, 112, 451, 1177, 1224
Bsp19I	CCATGG	1 cut(s)	1274
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	3 cut(s)	7, 556, 1138
BspCNI	CTCAG	2 cut(s)	694, 845
BspFNI	CGCG	1 cut(s)	576
BspHI	TCATGA	1 cut(s)	1326
BspLI	GGNNCC	3 cut(s)	6, 453, 502
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	5 cut(s)	107, 446, 459, 1185, 1232
BspTI	CTTAAG	1 cut(s)	1103
BsrGI	TGTACA	1 cut(s)	1150
BsrI	ACTGG	3 cut(s)	126, 249, 908
BssECI	CCNNGG	3 cut(s)	551, 557, 1274
BssMI	GATC	5 cut(s)	29, 112, 451, 1177, 1224
BssNAI	GTATAC	2 cut(s)	564, 1305
BssT1I	CCWWGG	1 cut(s)	1274
Bst1107I	GTATAC	2 cut(s)	564, 1305
Bst2UI	CCWGG	6 cut(s)	234, 384, 552, 558, 677, 786
Bst4CI	ACNGT	7 cut(s)	367, 517, 733, 952, 1155, 1247, 1302
BstAFI	CTTAAG	1 cut(s)	1103
BstAUI	TGTACA	1 cut(s)	1150
BstBAI	YACGTR	1 cut(s)	657
BstC8I	GCNNGC	1 cut(s)	1131
BstDEI	CTNAG	3 cut(s)	482, 681, 832
BstDSI	CCRYGG	1 cut(s)	1274
BstF5I	GGATG	4 cut(s)	254, 713, 781, 978
BstFNI	CGCG	1 cut(s)	576
BstHHI	GCGC	1 cut(s)	578
BstKTI	GATC	5 cut(s)	32, 115, 454, 1180, 1227
BstMAI	GTCTC	3 cut(s)	40, 709, 835
BstMBI	GATC	5 cut(s)	29, 112, 451, 1177, 1224
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 849, 913, 1135
BstNI	CCWGG	6 cut(s)	234, 384, 552, 558, 677, 786
BstNSI	RCATGY	3 cut(s)	753, 859, 911
BstSCI	CCNGG	6 cut(s)	232, 382, 550, 556, 675, 784
BstSFI	CTRYAG	2 cut(s)	99, 609
BstSLI	GKGCMC	3 cut(s)	662, 741, 890
BstUI	CGCG	1 cut(s)	576
BstV1I	GCAGC	3 cut(s)	749, 1149, 1333
BstX2I	RGATCY	2 cut(s)	451, 1224
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	2 cut(s)	451, 1224
BstZ17I	GTATAC	2 cut(s)	564, 1305
BsuRI	GGCC	3 cut(s)	7, 556, 1138
BtgI	CCRYGG	1 cut(s)	1274
BtsCI	GGATG	4 cut(s)	254, 713, 781, 978
BtsI	GCAGTG	3 cut(s)	93, 343, 606
BtsIMutI	CAGTG	6 cut(s)	93, 133, 242, 343, 606, 901
Cac8I	GCNNGC	1 cut(s)	1131
CaiI	CAGNNNCTG	1 cut(s)	557
CciI	TCATGA	1 cut(s)	1326
CfoI	GCGC	1 cut(s)	578
Cfr13I	GGNCC	3 cut(s)	5, 554, 1136
CseI	GACGC	1 cut(s)	1036
Csp6I	GTAC	3 cut(s)	84, 431, 1151
CviQI	GTAC	3 cut(s)	84, 431, 1151
DdeI	CTNAG	3 cut(s)	482, 681, 832
DpnI	GATC	5 cut(s)	31, 114, 453, 1179, 1226
DpnII	GATC	5 cut(s)	29, 112, 451, 1177, 1224
DraI	TTTAAA	1 cut(s)	328
Ecl136II	GAGCTC	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	1274
Eco24I	GRGCYC	1 cut(s)	526
Eco53kI	GAGCTC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	807
EcoICRI	GAGCTC	1 cut(s)	524
EcoO109I	RGGNCCY	2 cut(s)	5, 554
EcoRII	CCWGG	6 cut(s)	232, 382, 550, 556, 675, 784
EcoT14I	CCWWGG	1 cut(s)	1274
EcoT38I	GRGCYC	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	1274
FaqI	GGGAC	1 cut(s)	1113
FauNDI	CATATG	2 cut(s)	109, 882
FblI	GTMKAC	2 cut(s)	563, 1304
Fnu4HI	GCNGC	3 cut(s)	763, 1163, 1347
FokI	GGATG	4 cut(s)	261, 700, 768, 985
FriOI	GRGCYC	1 cut(s)	526
Fsp4HI	GCNGC	3 cut(s)	763, 1163, 1347
FspBI	CTAG	1 cut(s)	840
GlaI	GCGC	1 cut(s)	577
GluI	GCNGC	3 cut(s)	763, 1163, 1347
GsaI	CCCAGC	2 cut(s)	749, 1137
HaeIII	GGCC	3 cut(s)	7, 556, 1138
HgaI	GACGC	1 cut(s)	1036
HhaI	GCGC	1 cut(s)	578
Hin6I	GCGC	1 cut(s)	576
HinP1I	GCGC	1 cut(s)	576
HinfI	GANTC	4 cut(s)	25, 166, 624, 806
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	564, 660, 901, 1305
Hpy188I	TCNGA	7 cut(s)	521, 684, 896, 985, 1026, 1159, 1298
Hpy188III	TCNNGA	5 cut(s)	170, 208, 1171, 1262, 1327
Hpy8I	GTNNAC	4 cut(s)	564, 660, 901, 1305
HpyAV	CCTTC	4 cut(s)	259, 727, 1168, 1215
HpyCH4III	ACNGT	7 cut(s)	367, 517, 733, 952, 1155, 1247, 1302
HpyCH4IV	ACGT	1 cut(s)	656
HpyCH4V	TGCA	9 cut(s)	420, 448, 548, 611, 660, 776, 873, 1129, 1349
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 849, 913, 1135
HpyF3I	CTNAG	3 cut(s)	482, 681, 832
HpySE526I	ACGT	1 cut(s)	656
HspAI	GCGC	1 cut(s)	576
Kzo9I	GATC	5 cut(s)	29, 112, 451, 1177, 1224
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	3 cut(s)	749, 1149, 1333
LweI	GCATC	3 cut(s)	860, 1116, 1255
MaeI	CTAG	1 cut(s)	840
MaeII	ACGT	1 cut(s)	656
MaeIII	GTNAC	7 cut(s)	190, 240, 604, 625, 652, 946, 952
MalI	GATC	5 cut(s)	31, 114, 453, 1179, 1226
MboI	GATC	5 cut(s)	29, 112, 451, 1177, 1224
MflI	RGATCY	2 cut(s)	451, 1224
MhlI	GDGCHC	4 cut(s)	526, 662, 741, 890
MlyI	GAGTC	2 cut(s)	160, 633
MmeI	TCCRAC	2 cut(s)	1027, 1321
MseI	TTAA	4 cut(s)	327, 1044, 1104, 1369
MslI	CAYNNNNRTG	4 cut(s)	247, 734, 754, 906
MspA1I	CMGCKG	1 cut(s)	1346
MspCI	CTTAAG	1 cut(s)	1103
MspR9I	CCNGG	6 cut(s)	234, 384, 552, 558, 677, 786
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	6 cut(s)	234, 384, 552, 558, 677, 786
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	4 cut(s)	104, 849, 913, 1135
NcoI	CCATGG	1 cut(s)	1274
NdeI	CATATG	2 cut(s)	109, 882
NdeII	GATC	5 cut(s)	29, 112, 451, 1177, 1224
NlaIV	GGNNCC	3 cut(s)	6, 453, 502
NmuCI	GTSAC	3 cut(s)	240, 604, 625
NspI	RCATGY	3 cut(s)	753, 859, 911
OliI	CACNNNNGTG	1 cut(s)	734
PagI	TCATGA	1 cut(s)	1326
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	25, 806
PflMI	CCANNNNNTGG	3 cut(s)	557, 1095, 1289
PfoI	TCCNGGA	1 cut(s)	784
PkrI	GCNGC	3 cut(s)	764, 1164, 1348
PleI	GAGTC	2 cut(s)	160, 632
PpsI	GAGTC	2 cut(s)	160, 632
Ppu21I	YACGTR	1 cut(s)	657
PsiI	TTATAA	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	526
Psp6I	CCWGG	6 cut(s)	232, 382, 550, 556, 675, 784
PspFI	CCCAGC	2 cut(s)	745, 1133
PspGI	CCWGG	6 cut(s)	232, 382, 550, 556, 675, 784
PspN4I	GGNNCC	3 cut(s)	6, 453, 502
PspPI	GGNCC	3 cut(s)	5, 554, 1136
PstI	CTGCAG	1 cut(s)	613
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	2 cut(s)	451, 1224
PvuII	CAGCTG	1 cut(s)	1346
RsaI	GTAC	3 cut(s)	85, 432, 1152
RsaNI	GTAC	3 cut(s)	84, 431, 1151
RseI	CAYNNNNRTG	4 cut(s)	247, 734, 754, 906
SacI	GAGCTC	1 cut(s)	526
SaqAI	TTAA	4 cut(s)	327, 1044, 1104, 1369
SatI	GCNGC	3 cut(s)	763, 1163, 1347
Sau3AI	GATC	5 cut(s)	29, 112, 451, 1177, 1224
Sau96I	GGNCC	3 cut(s)	5, 554, 1136
ScaI	AGTACT	1 cut(s)	432
SchI	GAGTC	2 cut(s)	160, 633
ScrFI	CCNGG	6 cut(s)	234, 384, 552, 558, 677, 786
SduI	GDGCHC	4 cut(s)	526, 662, 741, 890
SfaNI	GCATC	3 cut(s)	860, 1116, 1255
SfcI	CTRYAG	2 cut(s)	99, 609
SmiMI	CAYNNNNRTG	4 cut(s)	247, 734, 754, 906
SmlI	CTYRAG	2 cut(s)	630, 1103
SmoI	CTYRAG	2 cut(s)	630, 1103
SsiI	CCGC	1 cut(s)	116
SspI	AATATT	1 cut(s)	932
SspMI	CTAG	1 cut(s)	840
SstI	GAGCTC	1 cut(s)	526
StyD4I	CCNGG	6 cut(s)	232, 382, 550, 556, 675, 784
StyI	CCWWGG	1 cut(s)	1274
TaaI	ACNGT	7 cut(s)	367, 517, 733, 952, 1155, 1247, 1302
TaiI	ACGT	1 cut(s)	659
TaqI	TCGA	3 cut(s)	28, 868, 1219
TatI	WGTACW	2 cut(s)	430, 1150
TfiI	GAWTC	2 cut(s)	25, 806
Tru1I	TTAA	4 cut(s)	327, 1044, 1104, 1369
Tru9I	TTAA	4 cut(s)	327, 1044, 1104, 1369
TscAI	CASTG	6 cut(s)	100, 133, 249, 350, 613, 908
TseFI	GTSAC	3 cut(s)	240, 604, 625
TseI	GCWGC	3 cut(s)	762, 1162, 1346
Tsp45I	GTSAC	3 cut(s)	240, 604, 625
TspDTI	ATGAA	3 cut(s)	429, 989, 1352
TspGWI	ACGGA	1 cut(s)	634
TspRI	CASTG	6 cut(s)	100, 133, 249, 350, 613, 908
Van91I	CCANNNNNTGG	3 cut(s)	557, 1095, 1289
Vha464I	CTTAAG	1 cut(s)	1103
VneI	GTGCAC	1 cut(s)	658
XapI	RAATTY	5 cut(s)	41, 323, 532, 599, 991
XceI	RCATGY	3 cut(s)	753, 859, 911
XmiI	GTMKAC	2 cut(s)	563, 1304
XspI	CTAG	1 cut(s)	840
ZrmI	AGTACT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.