Rorug02G0512900

cobra-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004894
Physical Location & Seq
Reverse (-)
64340192 .. 64341025
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0512900.1

Sequence Viewer

Length: 354 bp
ATGAGTTCCAACAAGGCTCTTCTTCTCTTGGCTCTTTTGGTTGCTCTTGTTCTTGTCGTGGCCGCAAGCAGAGACCTCGCTCAGACATCTACTAAGAAGGAAAATGAGGTGACCACTGCAAGTTCCAATGTTGGCGGCGTAGATGATGCAAAGTACGGTGGATATGGAGGCCCCGGAGGTGGCTACCAAGGTGGTAATGGCGGCCGCGGAGGCTACGGTGGAGGAAATCCTGGTTATGGAGGAGGACGAGGAGGAGGGTGTTACTATGGCTGCTGCAGGCGCCCTAACTATGGAAGAGGGTGCAGAAGGTGCTGCTCTTACGCTGGTGAGGCAGTTGATGGTGCAGAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

117

Amino Acids

11.62

Weight (kDa)

8.78

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRP PF07172 1 - 87 8.6e-13 Glycine rich protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 279
AccII CGCG 1 cut(s) 207
AciI CCGC 5 cut(s) 63, 135, 201, 205, 207
AcoI YGGCCR 2 cut(s) 60, 202
AcyI GRCGYC 1 cut(s) 280
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 3 cut(s) 179, 236, 290
AjnI CCWGG 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 66
AoxI GGCC 3 cut(s) 60, 169, 202
ApeKI GCWGC 3 cut(s) 270, 273, 312
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 121, 338
BanI GGYRCC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 257, 260, 299
BccI CCATC 1 cut(s) 332
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 283
BglI GCCNNNNNGGC 1 cut(s) 210
BisI GCNGC 7 cut(s) 63, 136, 202, 205, 271, 274, 313
BlsI GCNGC 7 cut(s) 64, 137, 203, 206, 272, 275, 314
Bme1390I CCNGG 2 cut(s) 174, 231
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 172, 281
BmrFI CCNGG 2 cut(s) 174, 231
BmsI GCATC 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 172, 187, 205
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 236, 290
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 172, 187, 205
BseLI CCNNNNNNNGG 3 cut(s) 179, 236, 290
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 3 cut(s) 255, 264, 267
BseX3I CGGCCG 1 cut(s) 202
BseXI GCAGC 3 cut(s) 257, 260, 299
BsgI GTGCAG 1 cut(s) 322
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 3 cut(s) 62, 171, 204
BshNI GGYRCC 1 cut(s) 279
BsiEI CGRYCG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 3 cut(s) 179, 236, 290
BsmAI GTCTC 1 cut(s) 66
BsnI GGCC 3 cut(s) 62, 171, 204
Bso31I GGTCTC 1 cut(s) 66
BspACI CCGC 5 cut(s) 63, 135, 201, 205, 207
BspANI GGCC 3 cut(s) 62, 171, 204
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 172, 281
BspMAI CTGCAG 1 cut(s) 278
BspQI GCTCTTC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 279
BspTNI GGTCTC 1 cut(s) 66
BssECI CCNNGG 3 cut(s) 172, 187, 205
BssNI GRCGYC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 158, 218
Bst6I CTCTTC 2 cut(s) 24, 289
BstACI GRCGYC 1 cut(s) 280
BstAPI GCANNNNNTGC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 67, 278
BstDEI CTNAG 2 cut(s) 81, 93
BstDSI CCRYGG 1 cut(s) 205
BstEII GGTNACC 1 cut(s) 109
BstFNI CGCG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 66
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 4 cut(s) 210, 279, 309, 329
BstNI CCWGG 1 cut(s) 231
BstPI GGTNACC 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 172, 229
BstSFI CTRYAG 1 cut(s) 274
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 3 cut(s) 257, 260, 299
BstZI CGGCCG 1 cut(s) 202
BsuRI GGCC 3 cut(s) 62, 171, 204
BtgI CCRYGG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 67, 278
CciNI GCGGCCGC 1 cut(s) 202
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 170
Cfr42I CCGCGG 1 cut(s) 208
Csp6I GTAC 1 cut(s) 154
CviJI RGCY 8 cut(s) 17, 32, 62, 171, 183, 204, 213, 270
CviKI_1 RGCY 8 cut(s) 17, 32, 62, 171, 183, 204, 213, 270
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 81, 93
DinI GGCGCC 1 cut(s) 281
EaeI YGGCCR 2 cut(s) 60, 202
EagI CGGCCG 1 cut(s) 202
Eam1104I CTCTTC 2 cut(s) 24, 289
EarI CTCTTC 2 cut(s) 24, 289
EclXI CGGCCG 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 66
Eco52I CGGCCG 1 cut(s) 202
Eco91I GGTNACC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 187
EgeI GGCGCC 1 cut(s) 281
EheI GGCGCC 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 187
FaiI YATR 4 cut(s) 165, 237, 267, 291
Fnu4HI GCNGC 7 cut(s) 63, 136, 202, 205, 271, 274, 313
Fsp4HI GCNGC 7 cut(s) 63, 136, 202, 205, 271, 274, 313
GlaI GCGC 1 cut(s) 281
GluI GCNGC 7 cut(s) 63, 136, 202, 205, 271, 274, 313
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 3 cut(s) 62, 171, 204
HapII CCGG 1 cut(s) 174
HhaI GCGC 1 cut(s) 282
Hin1I GRCGYC 1 cut(s) 280
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HpaII CCGG 1 cut(s) 174
HphI GGTGA 2 cut(s) 121, 338
Hpy188I TCNGA 1 cut(s) 84
HpyAV CCTTC 2 cut(s) 91, 300
HpyCH4III ACNGT 2 cut(s) 158, 218
HpyCH4V TGCA 5 cut(s) 119, 149, 276, 303, 344
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 279, 309, 329
HpyF3I CTNAG 2 cut(s) 81, 93
Hsp92I GRCGYC 1 cut(s) 280
HspAI GCGC 1 cut(s) 280
KasI GGCGCC 1 cut(s) 279
KspI CCGCGG 1 cut(s) 208
LguI GCTCTTC 1 cut(s) 24
LpnPI CCDG 5 cut(s) 187, 216, 243, 262, 309
Lsp1109I GCAGC 3 cut(s) 257, 260, 299
LweI GCATC 1 cut(s) 136
MaeIII GTNAC 2 cut(s) 109, 260
MboII GAAGA 3 cut(s) 11, 14, 306
Mly113I GGCGCC 1 cut(s) 280
MmeI TCCRAC 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 174, 231
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 4 cut(s) 210, 279, 309, 329
NarI GGCGCC 1 cut(s) 280
NciI CCSGG 1 cut(s) 174
NlaIV GGNNCC 2 cut(s) 172, 281
NmuCI GTSAC 1 cut(s) 109
NotI GCGGCCGC 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 24
PkrI GCNGC 7 cut(s) 64, 137, 203, 206, 272, 275, 314
PluTI GGCGCC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 229
PspEI GGTNACC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 172, 281
PspPI GGNCC 1 cut(s) 170
PstI CTGCAG 1 cut(s) 278
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SacII CCGCGG 1 cut(s) 208
SapI GCTCTTC 1 cut(s) 24
SatI GCNGC 7 cut(s) 63, 136, 202, 205, 271, 274, 313
Sau96I GGNCC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 174, 231
SetI ASST 5 cut(s) 78, 111, 181, 193, 311
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 274
SfoI GGCGCC 1 cut(s) 281
Sfr303I CCGCGG 1 cut(s) 208
SgrBI CCGCGG 1 cut(s) 208
SsiI CCGC 5 cut(s) 63, 135, 201, 205, 207
SspDI GGCGCC 1 cut(s) 279
StyD4I CCNGG 2 cut(s) 172, 229
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 158, 218
TauI GCSGC 4 cut(s) 65, 138, 204, 207
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 3 cut(s) 270, 273, 312
Tsp45I GTSAC 1 cut(s) 109
TspRI CASTG 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.