Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004894

Physical Location & Seq

Genomic Coordinates Reverse (-)

8390916 .. 8394303

Gene Structure 3388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00086120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGGTTTCTGTTGTCCAAGCTAACCAGTTTGACCACTGTTGTTCTATTTGGGCTTGGTTTCTGCAGCTTCTTCACCTCAACAGATGCATATGATCCGCTTGATCCTAATGGCAACATCACAATTAAGTGGGATATTATAAGCTGGACACCTGATGGCTATGTTGCCGTTGTTACGCTTTTTAACTTCCAGCAGTATAGACACATTCAAGCACCAGGCTGGACGCTTGGATGGACATGGGCAAAGAAGGAGGTAATTTGGAACATGGTGGGGGGACAAGCCACCGATCAAGGTGATTGTTCAAAATTTAAGACAACTCCCCCACATTGCTGCAAAAAGACCCCAACCATTGTTGATCTACTCCCTGGAACTCCGTACAATCAGCAGTATTCCAATTGTTGTAGAGGGGGAGTGCTGAGCTCATGGATACAGGATCCATCCAATGCTGCAGCTTCTTTTCAACTAAGTGTTGGTCGATCTGGAACGACCAACAAGACAGTTAGGCTTCCGAAAAACTATACCCTAATGGGACCTGGGCCTGGGTACACTTGTGGTGTTGCAAAAGTTGTCAAACCAACTAAATTCTTTACAGCTGATAAAAGAAGAGTCTCTCAAGCCCTGAGTAAGCCAGAGTCTCCGTATTTGGCTTCAGTTGTTTCAGCTGCTGATAAGAATTCACCTTTGGTCAGATGTACTAGCCATATGTGCCCTATCAGAGTTCATTGGCACGTCAAGCTGAATTACAAGGAATACTGGCGAGTGAAGGTCACAATTACAAACTTTGATTACAGGAGGAATTATTCTGATTGGAACTTGGTTGCCCAACACCCAAATTTTGACAATCTTACCCAAATTTTCAGCTTCAACGCAAAGTCCTTGACTCCTTATGGAACCATAAATGATACTGTAATGCTATGGGGAACCAAGTTCTACAACGACATGCTGGTGCAATCTGGGCCTCTCGGTAATGTGCAGTCAGAGATGCTTTTCCGGAAGAATCCAGCCACCTTCACTTTTGACAAGGGATGGGCGTTCCCAAGAAGGATCTATTTCAATGGTGATACTTGTGTAATGCCACCTCCAGATGCCTTTCCACATTTGCCAAATGCTGGTTTCCGACAGTATGTTTCTCTGCTTACTGTGATCATGATTTCAGTATCAACATTTGCATTCACATATGCCTATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

396

Amino Acids

44.55

Weight (kDa)

9.33

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	54 - 208	1.3e-61	COBRA-like protein
COB_C	PF25079	222 - 365	2.1e-46	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02210 AT3G29810
fragaria_vesca	FvH4_6g46460 FvH4_6g46530
malus_domestica	MD09G1072800.v1.1 MD17G1064200.v1.1
prunus_persica	Prupe.3G250400_v2.0.a1 Prupe.3G250400_v2.0.a1
pyrus_communis	pycom12433g00030 pycom17g06430
rosa_chinensis	RchiOBHm_Chr2g0153051 RchiOBHm_Chr2g0165011 RchiOBHm_Chr2g0165171 RchiOBHm_Chr5g0001191
rosa_multiflora	Rmu_sc0001097.1_g000020 Rmu_sc0001097.1_g000043
rosa_roxburghii	Rroxscaffold_2G00085970 Rroxscaffold_2G00086120
rosa_rugosa	Rorug02G0512200 Rorug02G0512300 Rorug02G0512900
rosa_samantha	Rh2AG580300 Rh2AG581100 Rh2BG591600 Rh2BG592400 Rh2CG562100 Rh2CG563100 Rh2DG601700 Rh2DG602400
rosa_wichuraiana	Rw2G048170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	1109
AccIII	TCCGGA	1 cut(s)	990
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	5 cut(s)	89, 98, 428, 441, 1052
AcsI	RAATTY	5 cut(s)	305, 581, 673, 832, 852
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	3 cut(s)	377, 545, 694
AfiI	CCNNNNNNNGG	2 cut(s)	539, 1109
AgsI	TTSAA	5 cut(s)	209, 303, 461, 865, 1054
AjiI	CACGTC	1 cut(s)	730
AjnI	CCWGG	4 cut(s)	214, 364, 532, 538
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AluBI	AGCT	9 cut(s)	22, 69, 144, 420, 452, 593, 662, 736, 861
AluI	AGCT	9 cut(s)	22, 69, 144, 420, 452, 593, 662, 736, 861
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	2 cut(s)	613, 639
AlwI	GGATC	5 cut(s)	89, 98, 428, 441, 1052
AlwNI	CAGNNNCTG	1 cut(s)	665
Aor13HI	TCCGGA	1 cut(s)	990
AoxI	GGCC	2 cut(s)	536, 956
ApeKI	GCWGC	5 cut(s)	66, 330, 446, 449, 662
ApoI	RAATTY	5 cut(s)	305, 581, 673, 832, 852
AspS9I	GGNCC	3 cut(s)	530, 536, 956
AsuHPI	GGTGA	4 cut(s)	67, 305, 669, 1070
AvaII	GGWCC	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	710
BaeI	ACNNNNGTAYC	4 cut(s)	535, 568, 1053, 1086
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	5 cut(s)	78, 317, 433, 461, 649
BccI	CCATC	4 cut(s)	149, 225, 445, 1020
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	4 cut(s)	216, 366, 534, 540
BciVI	GTATCC	1 cut(s)	420
BclI	TGATCA	1 cut(s)	1143
BcoDI	GTCTC	2 cut(s)	613, 639
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	2 cut(s)	64, 447
BfuI	GTATCC	1 cut(s)	420
BisI	GCNGC	5 cut(s)	67, 331, 447, 450, 663
BlpI	GCTNAGC	1 cut(s)	416
BlsI	GCNGC	5 cut(s)	68, 332, 448, 451, 664
Bme1390I	CCNGG	4 cut(s)	216, 366, 534, 540
Bme18I	GGWCC	1 cut(s)	530
BmgBI	CACGTC	1 cut(s)	730
BmgT120I	GGNCC	3 cut(s)	530, 536, 956
BmiI	GGNNCC	4 cut(s)	435, 531, 892, 922
BmrFI	CCNGG	4 cut(s)	216, 366, 534, 540
BmsI	GCATC	3 cut(s)	76, 972, 1075
BpmI	CTGGAG	1 cut(s)	1065
Bpu1102I	GCTNAGC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	597
BsaJI	CCNNGG	3 cut(s)	364, 533, 539
BsaWI	WCCGGW	1 cut(s)	990
Bsc4I	CCNNNNNNNGG	2 cut(s)	539, 1109
Bse1I	ACTGG	2 cut(s)	27, 758
Bse3DI	GCAATG	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	990
BseBI	CCWGG	4 cut(s)	216, 366, 534, 540
BseDI	CCNNGG	3 cut(s)	364, 533, 539
BseGI	GGATG	3 cut(s)	236, 437, 1031
BseLI	CCNNNNNNNGG	2 cut(s)	539, 1109
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	407, 611
BseNI	ACTGG	2 cut(s)	27, 758
BseSI	GKGCMC	1 cut(s)	710
BseXI	GCAGC	5 cut(s)	78, 317, 433, 461, 649
BsgI	GTGCAG	1 cut(s)	992
BshFI	GGCC	2 cut(s)	538, 958
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	991
BslFI	GGGAC	2 cut(s)	288, 543
BslI	CCNNNNNNNGG	2 cut(s)	539, 1109
BsmAI	GTCTC	2 cut(s)	613, 639
BsmFI	GGGAC	2 cut(s)	288, 543
BsmI	GAATGC	1 cut(s)	1169
BsnI	GGCC	2 cut(s)	538, 958
Bsp1286I	GDGCHC	2 cut(s)	422, 710
Bsp13I	TCCGGA	1 cut(s)	990
Bsp143I	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1044, 1143
Bsp1720I	GCTNAGC	1 cut(s)	416
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	2 cut(s)	538, 958
BspCNI	CTCAG	2 cut(s)	408, 612
BspEI	TCCGGA	1 cut(s)	990
BspHI	TCATGA	1 cut(s)	1146
BspLI	GGNNCC	4 cut(s)	435, 531, 892, 922
BspMAI	CTGCAG	2 cut(s)	68, 451
BspPI	GGATC	5 cut(s)	89, 98, 428, 441, 1052
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	27, 758
BssECI	CCNNGG	3 cut(s)	364, 533, 539
BssMI	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1044, 1143
Bst2UI	CCWGG	4 cut(s)	216, 366, 534, 540
Bst4CI	ACNGT	5 cut(s)	40, 499, 907, 1122, 1141
Bst6I	CTCTTC	1 cut(s)	598
BstDEI	CTNAG	4 cut(s)	416, 464, 620, 1188
BstF5I	GGATG	3 cut(s)	236, 437, 1031
BstKTI	GATC	8 cut(s)	97, 106, 289, 358, 436, 479, 1047, 1146
BstMAI	GTCTC	2 cut(s)	613, 639
BstMBI	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1044, 1143
BstMWI	GCNNNNNNNGC	3 cut(s)	705, 733, 955
BstNI	CCWGG	4 cut(s)	216, 366, 534, 540
BstNSI	RCATGY	1 cut(s)	943
BstSCI	CCNGG	4 cut(s)	214, 364, 532, 538
BstSFI	CTRYAG	2 cut(s)	64, 447
BstSLI	GKGCMC	1 cut(s)	710
BstV1I	GCAGC	5 cut(s)	78, 317, 433, 461, 649
BstX2I	RGATCY	2 cut(s)	433, 1044
BstYI	RGATCY	2 cut(s)	433, 1044
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	538, 958
BtrI	CACGTC	1 cut(s)	730
BtsCI	GGATG	3 cut(s)	236, 437, 1031
BtsIMutI	CAGTG	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	665
CciI	TCATGA	1 cut(s)	1146
Cfr13I	GGNCC	3 cut(s)	530, 536, 956
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	3 cut(s)	376, 544, 693
CviAII	CATG	5 cut(s)	237, 265, 423, 940, 1147
CviQI	GTAC	3 cut(s)	376, 544, 693
DdeI	CTNAG	4 cut(s)	416, 464, 620, 1188
DpnI	GATC	8 cut(s)	96, 105, 288, 357, 435, 478, 1046, 1145
DpnII	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1044, 1143
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
Ecl136II	GAGCTC	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	530
Eco53kI	GAGCTC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	673
EcoRII	CCWGG	4 cut(s)	214, 364, 532, 538
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	422
FaeI	CATG	5 cut(s)	240, 268, 426, 943, 1150
FaqI	GGGAC	2 cut(s)	288, 543
FatI	CATG	5 cut(s)	236, 264, 422, 939, 1146
FauNDI	CATATG	3 cut(s)	91, 702, 1177
FbaI	TGATCA	1 cut(s)	1143
Fnu4HI	GCNGC	5 cut(s)	67, 331, 447, 450, 663
FokI	GGATG	3 cut(s)	243, 424, 1038
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	5 cut(s)	67, 331, 447, 450, 663
FspBI	CTAG	1 cut(s)	696
GluI	GCNGC	5 cut(s)	67, 331, 447, 450, 663
GsuI	CTGGAG	1 cut(s)	1065
HaeIII	GGCC	2 cut(s)	538, 958
HapII	CCGG	1 cut(s)	991
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	5 cut(s)	240, 268, 426, 943, 1150
HinfI	GANTC	4 cut(s)	606, 632, 880, 997
HpaII	CCGG	1 cut(s)	991
HphI	GGTGA	4 cut(s)	67, 305, 669, 1070
Hpy166II	GTNNAC	1 cut(s)	546
Hpy188I	TCNGA	6 cut(s)	510, 689, 716, 805, 979, 1118
Hpy188III	TCNNGA	4 cut(s)	480, 991, 1082, 1147
Hpy8I	GTNNAC	1 cut(s)	546
HpyAV	CCTTC	4 cut(s)	241, 757, 1018, 1035
HpyCH4III	ACNGT	5 cut(s)	40, 499, 907, 1122, 1141
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	8 cut(s)	66, 89, 333, 449, 560, 949, 973, 1169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	705, 733, 955
HpyF3I	CTNAG	4 cut(s)	416, 464, 620, 1188
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	5 cut(s)	240, 268, 426, 943, 1150
Kpn2I	TCCGGA	1 cut(s)	990
Ksp22I	TGATCA	1 cut(s)	1143
Kzo9I	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1044, 1143
Lsp1109I	GCAGC	5 cut(s)	78, 317, 433, 461, 649
LweI	GCATC	3 cut(s)	76, 972, 1075
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	2 cut(s)	172, 766
MalI	GATC	8 cut(s)	96, 105, 288, 357, 435, 478, 1046, 1145
MboI	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1044, 1143
MboII	GAAGA	3 cut(s)	64, 615, 1006
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	2 cut(s)	433, 1044
MhlI	GDGCHC	2 cut(s)	422, 710
MlyI	GAGTC	3 cut(s)	615, 641, 874
MmeI	TCCRAC	1 cut(s)	1141
MnlI	CCTC	6 cut(s)	88, 244, 398, 786, 969, 1089
Mph1103I	ATGCAT	1 cut(s)	91
MroI	TCCGGA	1 cut(s)	990
MseI	TTAA	3 cut(s)	126, 183, 309
MslI	CAYNNNNRTG	1 cut(s)	944
MspA1I	CMGCKG	2 cut(s)	593, 662
MspI	CCGG	1 cut(s)	991
MspR9I	CCNGG	4 cut(s)	216, 366, 534, 540
MunI	CAATTG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	1169
MvaI	CCWGG	4 cut(s)	216, 366, 534, 540
MwoI	GCNNNNNNNGC	3 cut(s)	705, 733, 955
NdeI	CATATG	3 cut(s)	91, 702, 1177
NdeII	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1044, 1143
NlaIII	CATG	5 cut(s)	240, 268, 426, 943, 1150
NlaIV	GGNNCC	4 cut(s)	435, 531, 892, 922
NmuCI	GTSAC	1 cut(s)	766
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	1 cut(s)	943
PagI	TCATGA	1 cut(s)	1146
PctI	GAATGC	1 cut(s)	1169
PfeI	GAWTC	1 cut(s)	997
PflMI	CCANNNNNTGG	1 cut(s)	1109
PkrI	GCNGC	5 cut(s)	68, 332, 448, 451, 664
PleI	GAGTC	3 cut(s)	614, 640, 874
PpsI	GAGTC	3 cut(s)	614, 640, 874
PpuMI	RGGWCCY	1 cut(s)	530
PsiI	TTATAA	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	4 cut(s)	214, 364, 532, 538
PspGI	CCWGG	4 cut(s)	214, 364, 532, 538
PspN4I	GGNNCC	4 cut(s)	435, 531, 892, 922
PspPI	GGNCC	3 cut(s)	530, 536, 956
PspPPI	RGGWCCY	1 cut(s)	530
PstI	CTGCAG	2 cut(s)	68, 451
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	2 cut(s)	433, 1044
PvuII	CAGCTG	2 cut(s)	593, 662
RsaI	GTAC	3 cut(s)	377, 545, 694
RsaNI	GTAC	3 cut(s)	376, 544, 693
RseI	CAYNNNNRTG	1 cut(s)	944
SacI	GAGCTC	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	126, 183, 309
SatI	GCNGC	5 cut(s)	67, 331, 447, 450, 663
Sau3AI	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1044, 1143
Sau96I	GGNCC	3 cut(s)	530, 536, 956
SchI	GAGTC	3 cut(s)	615, 641, 874
ScrFI	CCNGG	4 cut(s)	216, 366, 534, 540
SduI	GDGCHC	2 cut(s)	422, 710
SfaNI	GCATC	3 cut(s)	76, 972, 1075
SfcI	CTRYAG	2 cut(s)	64, 447
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	944
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	696
SstI	GAGCTC	1 cut(s)	422
StyD4I	CCNGG	4 cut(s)	214, 364, 532, 538
TaaI	ACNGT	5 cut(s)	40, 499, 907, 1122, 1141
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	1 cut(s)	475
TatI	WGTACW	1 cut(s)	692
TfiI	GAWTC	1 cut(s)	997
Tru1I	TTAA	3 cut(s)	126, 183, 309
Tru9I	TTAA	3 cut(s)	126, 183, 309
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	766
TseI	GCWGC	5 cut(s)	66, 330, 446, 449, 662
Tsp45I	GTSAC	1 cut(s)	766
TspDTI	ATGAA	1 cut(s)	710
TspGWI	ACGGA	2 cut(s)	363, 627
TspRI	CASTG	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	1109
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	5 cut(s)	305, 581, 673, 832, 852
XceI	RCATGY	1 cut(s)	943
XspI	CTAG	1 cut(s)	696
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.