cobra-like protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02210 AT3G29810 |
| fragaria_vesca | FvH4_6g46460 FvH4_6g46530 |
| malus_domestica | MD09G1072800.v1.1 MD17G1064200.v1.1 |
| prunus_persica | Prupe.3G250400_v2.0.a1 Prupe.3G250400_v2.0.a1 |
| pyrus_communis | pycom12433g00030 pycom17g06430 |
| rosa_chinensis | RchiOBHm_Chr2g0153051 RchiOBHm_Chr2g0165011 RchiOBHm_Chr2g0165171 RchiOBHm_Chr5g0001191 |
| rosa_multiflora | Rmu_sc0001097.1_g000020 Rmu_sc0001097.1_g000043 |
| rosa_roxburghii | Rroxscaffold_2G00085970 Rroxscaffold_2G00086120 |
| rosa_rugosa | Rorug02G0512200 Rorug02G0512300 Rorug02G0512900 |
| rosa_samantha | Rh2AG580300 Rh2AG581100 Rh2BG591600 Rh2BG592400 Rh2CG562100 Rh2CG563100 Rh2DG601700 Rh2DG602400 |
| rosa_wichuraiana | Rw2G048170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2631 |
| AatII | GACGTC | 1 cut(s) | 3348 |
| Acc36I | ACCTGC | 1 cut(s) | 2246 |
| Acc65I | GGTACC | 1 cut(s) | 1819 |
| AccB1I | GGYRCC | 2 cut(s) | 1819, 1840 |
| AccBSI | CCGCTC | 1 cut(s) | 1510 |
| AccI | GTMKAC | 2 cut(s) | 1795, 1858 |
| AclWI | GGATC | 3 cut(s) | 645, 1490, 3625 |
| AcoI | YGGCCR | 1 cut(s) | 1717 |
| AcsI | RAATTY | 5 cut(s) | 410, 952, 1264, 1711, 2053 |
| AcuI | CTGAAG | 1 cut(s) | 3110 |
| AcyI | GRCGYC | 1 cut(s) | 3345 |
| AfaI | GTAC | 7 cut(s) | 208, 331, 1821, 2808, 3372, 3655, 3685 |
| AfeI | AGCGCT | 2 cut(s) | 405, 3277 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 331, 531, 1221, 1341, 2886 |
| AflII | CTTAAG | 2 cut(s) | 2030, 2942 |
| AflIII | ACRYGT | 1 cut(s) | 1618 |
| AgeI | ACCGGT | 1 cut(s) | 531 |
| AhlI | ACTAGT | 2 cut(s) | 460, 3686 |
| AjnI | CCWGG | 5 cut(s) | 928, 1594, 1916, 2647, 3472 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2662, 2694 |
| Alw21I | GWGCWC | 3 cut(s) | 10, 928, 3190 |
| Alw44I | GTGCAC | 2 cut(s) | 924, 3186 |
| AlwI | GGATC | 3 cut(s) | 645, 1490, 3625 |
| Ama87I | CYCGRG | 2 cut(s) | 169, 1665 |
| Aor51HI | AGCGCT | 2 cut(s) | 405, 3277 |
| ApaI | GGGCCC | 1 cut(s) | 521 |
| ApaLI | GTGCAC | 2 cut(s) | 924, 3186 |
| ApoI | RAATTY | 5 cut(s) | 410, 952, 1264, 1711, 2053 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3460, 3492 |
| AseI | ATTAAT | 2 cut(s) | 740, 1395 |
| AsiGI | ACCGGT | 1 cut(s) | 531 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 646, 1533, 2057 |
| Asp718I | GGTACC | 1 cut(s) | 1819 |
| AspLEI | GCGC | 4 cut(s) | 406, 1208, 3063, 3278 |
| AsuC2I | CCSGG | 2 cut(s) | 155, 1024 |
| AsuHPI | GGTGA | 3 cut(s) | 1204, 1453, 2372 |
| AsuII | TTCGAA | 2 cut(s) | 676, 3466 |
| AsuNHI | GCTAGC | 1 cut(s) | 3589 |
| AvaI | CYCGRG | 2 cut(s) | 169, 1665 |
| AvaII | GGWCC | 5 cut(s) | 151, 1224, 1360, 2425, 3255 |
| BaeGI | GKGCMC | 3 cut(s) | 521, 928, 3190 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2568, 2601 |
| BalI | TGGCCA | 1 cut(s) | 1719 |
| BanI | GGYRCC | 2 cut(s) | 1819, 1840 |
| BanII | GRGCYC | 3 cut(s) | 10, 470, 521 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 519, 551, 1803, 1835 |
| BbsI | GAAGAC | 3 cut(s) | 342, 534, 1734 |
| Bbv12I | GWGCWC | 3 cut(s) | 10, 928, 3190 |
| BbvCI | CCTCAGC | 1 cut(s) | 3366 |
| BceAI | ACGGC | 2 cut(s) | 189, 1784 |
| BciT130I | CCWGG | 5 cut(s) | 930, 1596, 1918, 2649, 3474 |
| BciVI | GTATCC | 2 cut(s) | 1682, 2569 |
| BclI | TGATCA | 3 cut(s) | 229, 2128, 2452 |
| BcnI | CCSGG | 2 cut(s) | 155, 1024 |
| BcuI | ACTAGT | 2 cut(s) | 460, 3686 |
| BfmI | CTRYAG | 1 cut(s) | 308 |
| BfoI | RGCGCY | 4 cut(s) | 407, 1209, 3064, 3279 |
| BfrI | CTTAAG | 2 cut(s) | 2030, 2942 |
| BfuAI | ACCTGC | 1 cut(s) | 2246 |
| BfuI | GTATCC | 2 cut(s) | 1682, 2569 |
| BglII | AGATCT | 1 cut(s) | 487 |
| BlpI | GCTNAGC | 2 cut(s) | 2568, 3102 |
| BmcAI | AGTACT | 1 cut(s) | 3655 |
| Bme1390I | CCNGG | 7 cut(s) | 155, 930, 1024, 1596, 1918, 2649, 3474 |
| Bme18I | GGWCC | 5 cut(s) | 151, 1224, 1360, 2425, 3255 |
| BmeT110I | CYCGRG | 2 cut(s) | 169, 1665 |
| BmrFI | CCNGG | 7 cut(s) | 155, 930, 1024, 1596, 1918, 2649, 3474 |
| BmrI | ACTGGG | 1 cut(s) | 30 |
| BmsI | GCATC | 9 cut(s) | 53, 172, 1271, 2554, 2785, 2969, 3236, 3292, 3352 |
| BmtI | GCTAGC | 1 cut(s) | 3593 |
| BmuI | ACTGGG | 1 cut(s) | 30 |
| BpiI | GAAGAC | 3 cut(s) | 342, 534, 1734 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3425, 3457 |
| BpmI | CTGGAG | 1 cut(s) | 2670 |
| Bpu10I | CCTNAGC | 3 cut(s) | 356, 1355, 3366 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2568, 3102 |
| Bpu14I | TTCGAA | 2 cut(s) | 676, 3466 |
| BpuEI | CTTGAG | 5 cut(s) | 818, 1923, 2168, 2269, 3452 |
| BpuMI | CCSGG | 2 cut(s) | 155, 1024 |
| Bsa29I | ATCGAT | 2 cut(s) | 1279, 3694 |
| BsaAI | YACGTR | 2 cut(s) | 893, 3683 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2754 |
| BsaHI | GRCGYC | 1 cut(s) | 3345 |
| BsaI | GGTCTC | 1 cut(s) | 2064 |
| BsaJI | CCNNGG | 9 cut(s) | 929, 1335, 1594, 1666, 2699, 2897, 3357, 3472, 3485 |
| BsaWI | WCCGGW | 2 cut(s) | 129, 531 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1031, 1061, 2643, 2673 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 331, 531, 1221, 1341, 2886 |
| Bse118I | RCCGGY | 1 cut(s) | 531 |
| Bse1I | ACTGG | 3 cut(s) | 36, 811, 1844 |
| Bse3DI | GCAATG | 5 cut(s) | 588, 1227, 1296, 2418, 2795 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2754 |
| BseBI | CCWGG | 5 cut(s) | 930, 1596, 1918, 2649, 3474 |
| BseCI | ATCGAT | 2 cut(s) | 1279, 3694 |
| BseDI | CCNNGG | 9 cut(s) | 929, 1335, 1594, 1666, 2699, 2897, 3357, 3472, 3485 |
| BseJI | GATNNNNATC | 1 cut(s) | 2754 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 331, 531, 1221, 1341, 2886 |
| BseMI | GCAATG | 5 cut(s) | 588, 1227, 1296, 2418, 2795 |
| BseMII | CTCAG | 8 cut(s) | 296, 861, 1406, 2225, 2582, 2925, 3116, 3357 |
| BseNI | ACTGG | 3 cut(s) | 36, 811, 1844 |
| BseRI | GAGGAG | 4 cut(s) | 460, 2251, 2634, 3210 |
| BseSI | GKGCMC | 3 cut(s) | 521, 928, 3190 |
| BsgI | GTGCAG | 4 cut(s) | 581, 2514, 3010, 3202 |
| BshNI | GGYRCC | 2 cut(s) | 1819, 1840 |
| BshTI | ACCGGT | 1 cut(s) | 531 |
| BshVI | ATCGAT | 2 cut(s) | 1279, 3694 |
| BsiHKAI | GWGCWC | 3 cut(s) | 10, 928, 3190 |
| BsiHKCI | CYCGRG | 2 cut(s) | 169, 1665 |
| BsiSI | CCGG | 5 cut(s) | 130, 154, 532, 1023, 2573 |
| BslFI | GGGAC | 5 cut(s) | 222, 617, 2200, 2248, 3332 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 331, 531, 1221, 1341, 2886 |
| BsmBI | CGTCTC | 3 cut(s) | 539, 1169, 3428 |
| BsmFI | GGGAC | 5 cut(s) | 222, 617, 2200, 2248, 3332 |
| BsmI | GAATGC | 1 cut(s) | 3616 |
| Bso31I | GGTCTC | 1 cut(s) | 2064 |
| BsoBI | CYCGRG | 2 cut(s) | 169, 1665 |
| Bsp119I | TTCGAA | 2 cut(s) | 676, 3466 |
| Bsp120I | GGGCCC | 1 cut(s) | 517 |
| Bsp1286I | GDGCHC | 5 cut(s) | 10, 470, 521, 928, 3190 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2568, 3102 |
| Bsp19I | CCATGG | 1 cut(s) | 3357 |
| BspCNI | CTCAG | 8 cut(s) | 295, 860, 1407, 2226, 2581, 2926, 3115, 3358 |
| BspDI | ATCGAT | 2 cut(s) | 1279, 3694 |
| BspHI | TCATGA | 4 cut(s) | 10, 733, 2436, 3667 |
| BspMAI | CTGCAG | 1 cut(s) | 312 |
| BspMI | ACCTGC | 1 cut(s) | 2246 |
| BspOI | GCTAGC | 1 cut(s) | 3593 |
| BspPI | GGATC | 3 cut(s) | 645, 1490, 3625 |
| BspQI | GCTCTTC | 2 cut(s) | 2879, 3147 |
| BspT104I | TTCGAA | 2 cut(s) | 676, 3466 |
| BspT107I | GGYRCC | 2 cut(s) | 1819, 1840 |
| BspTI | CTTAAG | 2 cut(s) | 2030, 2942 |
| BspTNI | GGTCTC | 1 cut(s) | 2064 |
| BsrBI | CCGCTC | 1 cut(s) | 1510 |
| BsrDI | GCAATG | 5 cut(s) | 588, 1227, 1296, 2418, 2795 |
| BsrFI | RCCGGY | 1 cut(s) | 531 |
| BsrI | ACTGG | 3 cut(s) | 36, 811, 1844 |
| BssAI | RCCGGY | 1 cut(s) | 531 |
| BssECI | CCNNGG | 9 cut(s) | 929, 1335, 1594, 1666, 2699, 2897, 3357, 3472, 3485 |
| BssNI | GRCGYC | 1 cut(s) | 3345 |
| BssT1I | CCWWGG | 5 cut(s) | 1335, 2699, 2897, 3357, 3485 |
| Bst2UI | CCWGG | 5 cut(s) | 930, 1596, 1918, 2649, 3474 |
| Bst4CI | ACNGT | 3 cut(s) | 334, 1091, 3072 |
| Bst6I | CTCTTC | 5 cut(s) | 1524, 2512, 2699, 2879, 3147 |
| BstACI | GRCGYC | 1 cut(s) | 3345 |
| BstAFI | CTTAAG | 2 cut(s) | 2030, 2942 |
| BstBAI | YACGTR | 2 cut(s) | 893, 3683 |
| BstBI | TTCGAA | 2 cut(s) | 676, 3466 |
| BstC8I | GCNNGC | 6 cut(s) | 1591, 1764, 1928, 2120, 2786, 3591 |
| BstDSI | CCRYGG | 1 cut(s) | 3357 |
| BstH2I | RGCGCY | 4 cut(s) | 407, 1209, 3064, 3279 |
| BstHHI | GCGC | 4 cut(s) | 406, 1208, 3063, 3278 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 1768, 2624, 2790, 2799, 2947, 3224, 3332, 3362, 3611 |
| BstNI | CCWGG | 5 cut(s) | 930, 1596, 1918, 2649, 3474 |
| BstNSI | RCATGY | 4 cut(s) | 255, 1622, 1766, 2229 |
| BstSCI | CCNGG | 7 cut(s) | 153, 928, 1022, 1594, 1916, 2647, 3472 |
| BstSFI | CTRYAG | 1 cut(s) | 308 |
| BstSLI | GKGCMC | 3 cut(s) | 521, 928, 3190 |
| BstSNI | TACGTA | 1 cut(s) | 893 |
| BstV2I | GAAGAC | 3 cut(s) | 342, 534, 1734 |
| BstX2I | RGATCY | 2 cut(s) | 487, 3617 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3397 |
| BstYI | RGATCY | 2 cut(s) | 487, 3617 |
| Bsu15I | ATCGAT | 2 cut(s) | 1279, 3694 |
| BsuI | GTATCC | 2 cut(s) | 1682, 2569 |
| BsuTUI | ATCGAT | 2 cut(s) | 1279, 3694 |
| BtgI | CCRYGG | 1 cut(s) | 3357 |
| BtgZI | GCGATG | 1 cut(s) | 2370 |
| BtsI | GCAGTG | 3 cut(s) | 1460, 2544, 3190 |
| BtsIMutI | CAGTG | 9 cut(s) | 43, 804, 928, 1440, 1460, 2531, 2544, 3077, 3190 |
| BveI | ACCTGC | 1 cut(s) | 2246 |
| Cac8I | GCNNGC | 6 cut(s) | 1591, 1764, 1928, 2120, 2786, 3591 |
| CciI | TCATGA | 4 cut(s) | 10, 733, 2436, 3667 |
| CfoI | GCGC | 4 cut(s) | 406, 1208, 3063, 3278 |
| Cfr10I | RCCGGY | 1 cut(s) | 531 |
| ClaI | ATCGAT | 2 cut(s) | 1279, 3694 |
| CseI | GACGC | 1 cut(s) | 1781 |
| Csp6I | GTAC | 7 cut(s) | 207, 330, 1820, 2807, 3371, 3654, 3684 |
| CspAI | ACCGGT | 1 cut(s) | 531 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 284, 319 |
| CviQI | GTAC | 7 cut(s) | 207, 330, 1820, 2807, 3371, 3654, 3684 |
| DraI | TTTAAA | 2 cut(s) | 1135, 3115 |
| EaeI | YGGCCR | 1 cut(s) | 1717 |
| Eam1104I | CTCTTC | 5 cut(s) | 1524, 2512, 2699, 2879, 3147 |
| EarI | CTCTTC | 5 cut(s) | 1524, 2512, 2699, 2879, 3147 |
| Ecl136II | GAGCTC | 1 cut(s) | 8 |
| Eco105I | TACGTA | 1 cut(s) | 893 |
| Eco130I | CCWWGG | 5 cut(s) | 1335, 2699, 2897, 3357, 3485 |
| Eco24I | GRGCYC | 3 cut(s) | 10, 470, 521 |
| Eco31I | GGTCTC | 1 cut(s) | 2064 |
| Eco32I | GATATC | 1 cut(s) | 1315 |
| Eco47I | GGWCC | 5 cut(s) | 151, 1224, 1360, 2425, 3255 |
| Eco47III | AGCGCT | 2 cut(s) | 405, 3277 |
| Eco53kI | GAGCTC | 1 cut(s) | 8 |
| Eco57I | CTGAAG | 1 cut(s) | 3110 |
| Eco88I | CYCGRG | 2 cut(s) | 169, 1665 |
| EcoICRI | GAGCTC | 1 cut(s) | 8 |
| EcoO109I | RGGNCCY | 4 cut(s) | 518, 1360, 1924, 3255 |
| EcoRI | GAATTC | 1 cut(s) | 1711 |
| EcoRII | CCWGG | 5 cut(s) | 928, 1594, 1916, 2647, 3472 |
| EcoRV | GATATC | 1 cut(s) | 1315 |
| EcoT14I | CCWWGG | 5 cut(s) | 1335, 2699, 2897, 3357, 3485 |
| EcoT22I | ATGCAT | 1 cut(s) | 187 |
| EcoT38I | GRGCYC | 3 cut(s) | 10, 470, 521 |
| ErhI | CCWWGG | 5 cut(s) | 1335, 2699, 2897, 3357, 3485 |
| Esp3I | CGTCTC | 3 cut(s) | 539, 1169, 3428 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 579, 611, 1521, 1553 |
| FaqI | GGGAC | 5 cut(s) | 222, 617, 2200, 2248, 3332 |
| FauI | CCCGC | 3 cut(s) | 739, 1044, 3607 |
| FauNDI | CATATG | 1 cut(s) | 139 |
| FbaI | TGATCA | 3 cut(s) | 229, 2128, 2452 |
| FblI | GTMKAC | 2 cut(s) | 1795, 1858 |
| FriOI | GRGCYC | 3 cut(s) | 10, 470, 521 |
| GlaI | GCGC | 4 cut(s) | 405, 1207, 3062, 3277 |
| GsuI | CTGGAG | 1 cut(s) | 2670 |
| HaeII | RGCGCY | 4 cut(s) | 407, 1209, 3064, 3279 |
| HapII | CCGG | 5 cut(s) | 130, 154, 532, 1023, 2573 |
| HgaI | GACGC | 1 cut(s) | 1781 |
| HhaI | GCGC | 4 cut(s) | 406, 1208, 3063, 3278 |
| Hin1I | GRCGYC | 1 cut(s) | 3345 |
| Hin6I | GCGC | 4 cut(s) | 404, 1206, 3061, 3276 |
| HinP1I | GCGC | 4 cut(s) | 404, 1206, 3061, 3276 |
| HincII | GTYRAC | 6 cut(s) | 436, 760, 1564, 2613, 3343, 3533 |
| HindII | GTYRAC | 6 cut(s) | 436, 760, 1564, 2613, 3343, 3533 |
| HindIII | AAGCTT | 2 cut(s) | 358, 2917 |
| HpaI | GTTAAC | 2 cut(s) | 436, 2613 |
| HpaII | CCGG | 5 cut(s) | 130, 154, 532, 1023, 2573 |
| HphI | GGTGA | 3 cut(s) | 1204, 1453, 2372 |
| HpyCH4III | ACNGT | 3 cut(s) | 334, 1091, 3072 |
| HpyCH4IV | ACGT | 6 cut(s) | 548, 892, 1162, 3019, 3345, 3682 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 1768, 2624, 2790, 2799, 2947, 3224, 3332, 3362, 3611 |
| HpySE526I | ACGT | 6 cut(s) | 548, 892, 1162, 3019, 3345, 3682 |
| Hsp92I | GRCGYC | 1 cut(s) | 3345 |
| HspAI | GCGC | 4 cut(s) | 404, 1206, 3061, 3276 |
| KpnI | GGTACC | 1 cut(s) | 1823 |
| Ksp22I | TGATCA | 3 cut(s) | 229, 2128, 2452 |
| KspAI | GTTAAC | 2 cut(s) | 436, 2613 |
| LguI | GCTCTTC | 2 cut(s) | 2879, 3147 |
| LmnI | GCTCC | 7 cut(s) | 5, 473, 2651, 2798, 2895, 3223, 3602 |
| LweI | GCATC | 9 cut(s) | 53, 172, 1271, 2554, 2785, 2969, 3236, 3292, 3352 |
| MaeII | ACGT | 6 cut(s) | 548, 892, 1162, 3019, 3345, 3682 |
| MaeIII | GTNAC | 6 cut(s) | 164, 534, 838, 3205, 3268, 3453 |
| MbiI | CCGCTC | 1 cut(s) | 1510 |
| MfeI | CAATTG | 1 cut(s) | 2124 |
| MflI | RGATCY | 2 cut(s) | 487, 3617 |
| MhlI | GDGCHC | 5 cut(s) | 10, 470, 521, 928, 3190 |
| MlsI | TGGCCA | 1 cut(s) | 1719 |
| MluNI | TGGCCA | 1 cut(s) | 1719 |
| MlyI | GAGTC | 7 cut(s) | 255, 724, 839, 2041, 2716, 3412, 3434 |
| MmeI | TCCRAC | 7 cut(s) | 155, 407, 534, 950, 2115, 2917, 3395 |
| Mox20I | TGGCCA | 1 cut(s) | 1719 |
| Mph1103I | ATGCAT | 1 cut(s) | 187 |
| MroXI | GAANNNNTTC | 3 cut(s) | 646, 1533, 2057 |
| MscI | TGGCCA | 1 cut(s) | 1719 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2224, 3395 |
| Msp20I | TGGCCA | 1 cut(s) | 1719 |
| MspCI | CTTAAG | 2 cut(s) | 2030, 2942 |
| MspI | CCGG | 5 cut(s) | 130, 154, 532, 1023, 2573 |
| MspR9I | CCNGG | 7 cut(s) | 155, 930, 1024, 1596, 1918, 2649, 3474 |
| MunI | CAATTG | 1 cut(s) | 2124 |
| Mva1269I | GAATGC | 1 cut(s) | 3616 |
| MvaI | CCWGG | 5 cut(s) | 930, 1596, 1918, 2649, 3474 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 1768, 2624, 2790, 2799, 2947, 3224, 3332, 3362, 3611 |
| NciI | CCSGG | 2 cut(s) | 155, 1024 |
| NcoI | CCATGG | 1 cut(s) | 3357 |
| NdeI | CATATG | 1 cut(s) | 139 |
| NheI | GCTAGC | 1 cut(s) | 3589 |
| NmuCI | GTSAC | 1 cut(s) | 3205 |
| NsiI | ATGCAT | 1 cut(s) | 187 |
| NspI | RCATGY | 4 cut(s) | 255, 1622, 1766, 2229 |
| NspV | TTCGAA | 2 cut(s) | 676, 3466 |
| PaeI | GCATGC | 1 cut(s) | 1766 |
| PagI | TCATGA | 4 cut(s) | 10, 733, 2436, 3667 |
| PciI | ACATGT | 1 cut(s) | 1618 |
| PciSI | GCTCTTC | 2 cut(s) | 2879, 3147 |
| PctI | GAATGC | 1 cut(s) | 3616 |
| PdmI | GAANNNNTTC | 3 cut(s) | 646, 1533, 2057 |
| PfoI | TCCNGGA | 2 cut(s) | 1916, 2647 |
| PinAI | ACCGGT | 1 cut(s) | 531 |
| PleI | GAGTC | 7 cut(s) | 255, 724, 839, 2041, 2715, 3412, 3434 |
| PpsI | GAGTC | 7 cut(s) | 255, 724, 839, 2041, 2715, 3412, 3434 |
| Ppu21I | YACGTR | 2 cut(s) | 893, 3683 |
| PpuMI | RGGWCCY | 2 cut(s) | 1360, 3255 |
| PscI | ACATGT | 1 cut(s) | 1618 |
| PshBI | ATTAAT | 2 cut(s) | 740, 1395 |
| PsiI | TTATAA | 1 cut(s) | 2631 |
| Psp124BI | GAGCTC | 1 cut(s) | 10 |
| Psp5II | RGGWCCY | 2 cut(s) | 1360, 3255 |
| Psp6I | CCWGG | 5 cut(s) | 928, 1594, 1916, 2647, 3472 |
| PspGI | CCWGG | 5 cut(s) | 928, 1594, 1916, 2647, 3472 |
| PspOMI | GGGCCC | 1 cut(s) | 517 |
| PspPPI | RGGWCCY | 2 cut(s) | 1360, 3255 |
| PstI | CTGCAG | 1 cut(s) | 312 |
| PsuI | RGATCY | 2 cut(s) | 487, 3617 |
| RsaI | GTAC | 7 cut(s) | 208, 331, 1821, 2808, 3372, 3655, 3685 |
| RsaNI | GTAC | 7 cut(s) | 207, 330, 1820, 2807, 3371, 3654, 3684 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2224, 3395 |
| SacI | GAGCTC | 1 cut(s) | 10 |
| SapI | GCTCTTC | 2 cut(s) | 2879, 3147 |
| ScaI | AGTACT | 1 cut(s) | 3655 |
| SchI | GAGTC | 7 cut(s) | 255, 724, 839, 2041, 2716, 3412, 3434 |
| ScrFI | CCNGG | 7 cut(s) | 155, 930, 1024, 1596, 1918, 2649, 3474 |
| SduI | GDGCHC | 5 cut(s) | 10, 470, 521, 928, 3190 |
| SfaNI | GCATC | 9 cut(s) | 53, 172, 1271, 2554, 2785, 2969, 3236, 3292, 3352 |
| SfcI | CTRYAG | 1 cut(s) | 308 |
| SfuI | TTCGAA | 2 cut(s) | 676, 3466 |
| SinI | GGWCC | 5 cut(s) | 151, 1224, 1360, 2425, 3255 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2224, 3395 |
| SmlI | CTYRAG | 7 cut(s) | 797, 1938, 2030, 2183, 2248, 2942, 3431 |
| SmoI | CTYRAG | 7 cut(s) | 797, 1938, 2030, 2183, 2248, 2942, 3431 |
| SnaBI | TACGTA | 1 cut(s) | 893 |
| SpeI | ACTAGT | 2 cut(s) | 460, 3686 |
| SphI | GCATGC | 1 cut(s) | 1766 |
| SspI | AATATT | 2 cut(s) | 856, 2636 |
| SstI | GAGCTC | 1 cut(s) | 10 |
| StyD4I | CCNGG | 7 cut(s) | 153, 928, 1022, 1594, 1916, 2647, 3472 |
| StyI | CCWWGG | 5 cut(s) | 1335, 2699, 2897, 3357, 3485 |
| TaaI | ACNGT | 3 cut(s) | 334, 1091, 3072 |
| TaiI | ACGT | 6 cut(s) | 551, 895, 1165, 3022, 3348, 3685 |
| TaqI | TCGA | 9 cut(s) | 259, 640, 676, 1279, 1380, 2562, 3466, 3562, 3694 |
| TatI | WGTACW | 1 cut(s) | 3653 |
| TauI | GCSGC | 3 cut(s) | 1489, 2627, 2950 |
| TscAI | CASTG | 9 cut(s) | 43, 811, 928, 1440, 1460, 2538, 2551, 3077, 3190 |
| TseFI | GTSAC | 1 cut(s) | 3205 |
| Tsp45I | GTSAC | 1 cut(s) | 3205 |
| TspGWI | ACGGA | 4 cut(s) | 695, 1646, 1664, 3452 |
| TspRI | CASTG | 9 cut(s) | 43, 811, 928, 1440, 1460, 2538, 2551, 3077, 3190 |
| Vha464I | CTTAAG | 2 cut(s) | 2030, 2942 |
| VneI | GTGCAC | 2 cut(s) | 924, 3186 |
| VpaK11BI | GGWCC | 5 cut(s) | 151, 1224, 1360, 2425, 3255 |
| VspI | ATTAAT | 2 cut(s) | 740, 1395 |
| XapI | RAATTY | 5 cut(s) | 410, 952, 1264, 1711, 2053 |
| XbaI | TCTAGA | 1 cut(s) | 2539 |
| XceI | RCATGY | 4 cut(s) | 255, 1622, 1766, 2229 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1796 |
| XmiI | GTMKAC | 2 cut(s) | 1795, 1858 |
| XmnI | GAANNNNTTC | 3 cut(s) | 646, 1533, 2057 |
| ZraI | GACGTC | 1 cut(s) | 3346 |
| ZrmI | AGTACT | 1 cut(s) | 3655 |
| Zsp2I | ATGCAT | 1 cut(s) | 187 |