Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012433

Orthogroup ID

OG0004894

Physical Location & Seq

Genomic Coordinates Reverse (-)

15552 .. 18226

Gene Structure 2675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12433g00030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGGGTTTCTCTTCCTGCCCATGATTCGATCAGTCCCGAAATTCGTCAGTTTCGCCACCTTGCTCGTCTTTGTGCTTTCTTGCACAAGCACCTTCATTGCTACAGAAGCGTATGATCCACTCGACCCGAACGGAAATATCACCATCAAATGGGATATCTTAAGCTGGACTACTGATGGCTATGTTGCCTCTGTTACACTTTTTAACTTCCAAAAGTATCGGCACATTCAGGCACCAGGATGGTTGCTAGGGTGGACATGGGCAAAGAAGGAGATTATATGGAACATGGTGGGAGGAGAAGCCACAGATCAAGGGGATTGTTCAAAATTCAGAACAACAATTCCCTACTGTTGTGAGAAGACTCCTACTATTGTTGATCTATTGCCCGGAACTCCTTACAATCAACAATACACAAATTGTTGCAAAGGAGGAGTACTTAGTTCATGGGTGCAAGATCCAGTAAATGCTGCAGCTTCTTTTCAAATAAGTGTTGGTCAAGCAGGAACCACGAACAAGACCATCAGACTTCCTAAAAACTTCACCCTTAACACACCCGGTCCTGGGTATACTTGTGGTCCGGCCAATGTTGTCAAACCAACTCAATTTATCAGTCCAGACAAAAGGAGAGTCACTCAAGCTATGATGACATGGAATGTGACGTGCATATATTCGCAATTCCTGGCTCAGGCAGCTCCTACATGTTGTGTCTCTCTTTCATCCTTCTACAATGAAAACGTAGTGCCCTGCACAACATGCTCATGTGGCTGCCAAAGTAACGCAACTCATCCAGGAAGCTGTGTAGAATCAGATTCGCCCCATTTGGCTTCAGCTGTCTCAGCCTCCAACAAGAATAGCTACACGCCTCTAGTTAGATGCACTAATCACATGTGCCCAATCCGAGTTCATTGGCATGTCAAGGAAAACTACGTACAATACTGGCGAGTGAAGATTACAGTTACAAACTTCAATTACAGGATGAATTATTCGGATTGGAACCTGGTTGTCCAACACCCAAACCTTGACAATCTGACCCAGATTTTCAGCTACAACTACAAGTCGATGACTCCTTATGGAAGAATTAATGATACTGCCATGTTATGGGGAATTACGTTCTACAATGATATTCTGATGCAATCTGGGCCTCTTGGTAATGTACAGTCAGAACTGCTTTTCCAAAAGGGTGAAGCATTCACATTTGATAAGGGTTGGGCGTTCCCTCGAAGGGTCTATTTCAATGGTGATAACTGTGTGATGCCACCTCCGGATGCCTATCCACGGTTGCCAAATTCTGGTTTCCAGCAGCATGTCTCTCTACTTACTCTAATCATGACATTTCTATCGACCATTGCAGTCATGTATGCTTATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

457

Amino Acids

51.19

Weight (kDa)

8.45

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	61 - 224	9.7e-67	COBRA-like protein
COB_C	PF25079	233 - 425	8.4e-60	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02210 AT3G29810
fragaria_vesca	FvH4_6g46460 FvH4_6g46530
malus_domestica	MD09G1072800.v1.1 MD17G1064200.v1.1
prunus_persica	Prupe.3G250400_v2.0.a1 Prupe.3G250400_v2.0.a1
pyrus_communis	pycom12433g00030 pycom17g06430
rosa_chinensis	RchiOBHm_Chr2g0153051 RchiOBHm_Chr2g0165011 RchiOBHm_Chr2g0165171 RchiOBHm_Chr5g0001191
rosa_multiflora	Rmu_sc0001097.1_g000020 Rmu_sc0001097.1_g000043
rosa_roxburghii	Rroxscaffold_2G00085970 Rroxscaffold_2G00086120
rosa_rugosa	Rorug02G0512200 Rorug02G0512300 Rorug02G0512900
rosa_samantha	Rh2AG580300 Rh2AG581100 Rh2BG591600 Rh2BG592400 Rh2CG562100 Rh2CG563100 Rh2DG601700 Rh2DG602400
rosa_wichuraiana	Rw2G048170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AccB7I	CCANNNNNTGG	3 cut(s)	150, 1098, 1289
AccI	GTMKAC	1 cut(s)	566
AccIII	TCCGGA	1 cut(s)	1261
AclWI	GGATC	2 cut(s)	110, 449
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	3 cut(s)	41, 326, 1285
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	3 cut(s)	435, 930, 1155
AfiI	CCNNNNNNNGG	8 cut(s)	150, 560, 561, 685, 1098, 1222, 1275, 1289
AflII	CTTAAG	1 cut(s)	160
AflIII	ACRYGT	2 cut(s)	698, 885
AgsI	TTSAA	4 cut(s)	324, 482, 967, 1234
AjiI	CACGTC	1 cut(s)	660
AjnI	CCWGG	5 cut(s)	235, 559, 678, 787, 996
AloI	GAACNNNNNNTCC	4 cut(s)	325, 357, 1155, 1187
AluBI	AGCT	8 cut(s)	165, 473, 638, 692, 795, 830, 855, 1044
AluI	AGCT	8 cut(s)	165, 473, 638, 692, 795, 830, 855, 1044
Alw26I	GTCTC	3 cut(s)	712, 838, 1312
AlwI	GGATC	2 cut(s)	110, 449
Aor13HI	TCCGGA	1 cut(s)	1261
AoxI	GGCC	2 cut(s)	579, 1139
ApeKI	GCWGC	5 cut(s)	467, 470, 689, 765, 1300
ApoI	RAATTY	3 cut(s)	41, 326, 1285
ArsI	GACNNNNNNTTYG	2 cut(s)	612, 644
AseI	ATTAAT	1 cut(s)	1080
AspS9I	GGNCC	3 cut(s)	557, 575, 1139
AsuC2I	CCSGG	2 cut(s)	387, 555
AsuHPI	GGTGA	4 cut(s)	133, 532, 1193, 1250
AvaII	GGWCC	2 cut(s)	557, 575
BaeGI	GKGCMC	2 cut(s)	744, 893
BanI	GGYRCC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	5 cut(s)	454, 482, 701, 752, 1312
BccI	CCATC	4 cut(s)	152, 170, 234, 527
BciT130I	CCWGG	5 cut(s)	237, 561, 680, 789, 998
BcnI	CCSGG	2 cut(s)	387, 555
BcoDI	GTCTC	3 cut(s)	712, 838, 1312
BfaI	CTAG	2 cut(s)	248, 866
BfmI	CTRYAG	2 cut(s)	102, 468
BfrI	CTTAAG	1 cut(s)	160
BisI	GCNGC	5 cut(s)	468, 471, 690, 766, 1301
BlsI	GCNGC	5 cut(s)	469, 472, 691, 767, 1302
BmcAI	AGTACT	1 cut(s)	435
Bme1390I	CCNGG	7 cut(s)	237, 387, 555, 561, 680, 789, 998
Bme18I	GGWCC	2 cut(s)	557, 575
BmgBI	CACGTC	1 cut(s)	660
BmgT120I	GGNCC	3 cut(s)	557, 575, 1139
BmiI	GGNNCC	3 cut(s)	234, 505, 995
BmrFI	CCNGG	7 cut(s)	237, 387, 555, 561, 680, 789, 998
BmsI	GCATC	4 cut(s)	863, 1119, 1242, 1255
BpiI	GAAGAC	1 cut(s)	365
BplI	GAGNNNNNCTC	2 cut(s)	616, 648
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	618
BpuMI	CCSGG	2 cut(s)	387, 555
BsaAI	YACGTR	1 cut(s)	928
BsaBI	GATNNNNATC	1 cut(s)	1269
BsaJI	CCNNGG	2 cut(s)	560, 1274
BsaWI	WCCGGW	1 cut(s)	1261
Bsc4I	CCNNNNNNNGG	8 cut(s)	150, 560, 561, 685, 1098, 1222, 1275, 1289
Bse1I	ACTGG	2 cut(s)	458, 941
Bse3DI	GCAATG	2 cut(s)	96, 1344
Bse8I	GATNNNNATC	1 cut(s)	1269
BseAI	TCCGGA	1 cut(s)	1261
BseBI	CCWGG	5 cut(s)	237, 561, 680, 789, 998
BseDI	CCNNGG	2 cut(s)	560, 1274
BseGI	GGATG	5 cut(s)	245, 716, 784, 981, 1270
BseJI	GATNNNNATC	1 cut(s)	1269
BseLI	CCNNNNNNNGG	8 cut(s)	150, 560, 561, 685, 1098, 1222, 1275, 1289
BseMI	GCAATG	2 cut(s)	96, 1344
BseMII	CTCAG	2 cut(s)	698, 849
BseNI	ACTGG	2 cut(s)	458, 941
BseRI	GAGGAG	2 cut(s)	309, 444
BseSI	GKGCMC	2 cut(s)	744, 893
BseXI	GCAGC	5 cut(s)	454, 482, 701, 752, 1312
BsgI	GTGCAG	1 cut(s)	730
BshFI	GGCC	2 cut(s)	581, 1141
BshNI	GGYRCC	1 cut(s)	232
BsiSI	CCGG	4 cut(s)	387, 555, 578, 1262
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	8 cut(s)	150, 560, 561, 685, 1098, 1222, 1275, 1289
BsmAI	GTCTC	3 cut(s)	712, 838, 1312
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	1187
BsnI	GGCC	2 cut(s)	581, 1141
Bsp1286I	GDGCHC	2 cut(s)	744, 893
Bsp13I	TCCGGA	1 cut(s)	1261
Bsp1407I	TGTACA	1 cut(s)	1153
Bsp143I	GATC	5 cut(s)	29, 115, 307, 376, 454
BspANI	GGCC	2 cut(s)	581, 1141
BspCNI	CTCAG	2 cut(s)	697, 848
BspEI	TCCGGA	1 cut(s)	1261
BspHI	TCATGA	1 cut(s)	1326
BspLI	GGNNCC	3 cut(s)	234, 505, 995
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	2 cut(s)	110, 449
BspT107I	GGYRCC	1 cut(s)	232
BspTI	CTTAAG	1 cut(s)	160
BsrDI	GCAATG	2 cut(s)	96, 1344
BsrGI	TGTACA	1 cut(s)	1153
BsrI	ACTGG	2 cut(s)	458, 941
BssECI	CCNNGG	2 cut(s)	560, 1274
BssMI	GATC	5 cut(s)	29, 115, 307, 376, 454
BssNAI	GTATAC	1 cut(s)	567
Bst1107I	GTATAC	1 cut(s)	567
Bst2UI	CCWGG	5 cut(s)	237, 561, 680, 789, 998
Bst4CI	ACNGT	5 cut(s)	350, 955, 1158, 1247, 1278
Bst6I	CTCTTC	1 cut(s)	17
BstAFI	CTTAAG	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	753
BstAUI	TGTACA	1 cut(s)	1153
BstBAI	YACGTR	1 cut(s)	928
BstDEI	CTNAG	3 cut(s)	437, 684, 835
BstDSI	CCRYGG	1 cut(s)	1274
BstENI	CCTNNNNNAGG	1 cut(s)	683
BstF5I	GGATG	5 cut(s)	245, 716, 784, 981, 1270
BstKTI	GATC	5 cut(s)	32, 118, 310, 379, 457
BstMAI	GTCTC	3 cut(s)	712, 838, 1312
BstMBI	GATC	5 cut(s)	29, 115, 307, 376, 454
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 689, 753, 762, 836, 1138
BstNI	CCWGG	5 cut(s)	237, 561, 680, 789, 998
BstNSI	RCATGY	5 cut(s)	702, 756, 889, 914, 1307
BstSCI	CCNGG	7 cut(s)	235, 385, 553, 559, 678, 787, 996
BstSFI	CTRYAG	2 cut(s)	102, 468
BstSLI	GKGCMC	2 cut(s)	744, 893
BstSNI	TACGTA	1 cut(s)	928
BstV1I	GCAGC	5 cut(s)	454, 482, 701, 752, 1312
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BstZ17I	GTATAC	1 cut(s)	567
BsuRI	GGCC	2 cut(s)	581, 1141
BtgI	CCRYGG	1 cut(s)	1274
BtrI	CACGTC	1 cut(s)	660
BtsCI	GGATG	5 cut(s)	245, 716, 784, 981, 1270
CciI	TCATGA	1 cut(s)	1326
Cfr13I	GGNCC	3 cut(s)	557, 575, 1139
CsiI	ACCWGGT	1 cut(s)	996
Csp6I	GTAC	3 cut(s)	434, 929, 1154
CviQI	GTAC	3 cut(s)	434, 929, 1154
DdeI	CTNAG	3 cut(s)	437, 684, 835
DpnI	GATC	5 cut(s)	31, 117, 309, 378, 456
DpnII	GATC	5 cut(s)	29, 115, 307, 376, 454
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco105I	TACGTA	1 cut(s)	928
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	557, 575
Eco57I	CTGAAG	1 cut(s)	810
EcoNI	CCTNNNNNAGG	1 cut(s)	683
EcoRII	CCWGG	5 cut(s)	235, 559, 678, 787, 996
EcoRV	GATATC	1 cut(s)	157
FaqI	GGGAC	1 cut(s)	20
FblI	GTMKAC	1 cut(s)	566
Fnu4HI	GCNGC	5 cut(s)	468, 471, 690, 766, 1301
FokI	GGATG	5 cut(s)	252, 703, 771, 988, 1277
Fsp4HI	GCNGC	5 cut(s)	468, 471, 690, 766, 1301
FspBI	CTAG	2 cut(s)	248, 866
GluI	GCNGC	5 cut(s)	468, 471, 690, 766, 1301
HaeIII	GGCC	2 cut(s)	581, 1141
HapII	CCGG	4 cut(s)	387, 555, 578, 1262
HinfI	GANTC	6 cut(s)	25, 361, 627, 803, 809, 1063
HpaII	CCGG	4 cut(s)	387, 555, 578, 1262
HphI	GGTGA	4 cut(s)	133, 532, 1193, 1250
Hpy166II	GTNNAC	2 cut(s)	255, 567
Hpy188I	TCNGA	8 cut(s)	332, 524, 808, 899, 988, 1029, 1128, 1162
Hpy188III	TCNNGA	4 cut(s)	37, 614, 1262, 1327
Hpy8I	GTNNAC	2 cut(s)	255, 567
HpyAV	CCTTC	4 cut(s)	103, 262, 730, 1215
HpyCH4III	ACNGT	5 cut(s)	350, 955, 1158, 1247, 1278
HpyCH4IV	ACGT	4 cut(s)	659, 735, 927, 1109
HpyCH4V	TGCA	9 cut(s)	84, 423, 451, 470, 663, 747, 876, 1132, 1349
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 689, 753, 762, 836, 1138
HpyF3I	CTNAG	3 cut(s)	437, 684, 835
HpySE526I	ACGT	4 cut(s)	659, 735, 927, 1109
Kpn2I	TCCGGA	1 cut(s)	1261
Kzo9I	GATC	5 cut(s)	29, 115, 307, 376, 454
LmnI	GCTCC	1 cut(s)	697
Lsp1109I	GCAGC	5 cut(s)	454, 482, 701, 752, 1312
LweI	GCATC	4 cut(s)	863, 1119, 1242, 1255
MabI	ACCWGGT	1 cut(s)	996
MaeI	CTAG	2 cut(s)	248, 866
MaeII	ACGT	4 cut(s)	659, 735, 927, 1109
MaeIII	GTNAC	5 cut(s)	193, 628, 655, 773, 955
MalI	GATC	5 cut(s)	31, 117, 309, 378, 456
MboI	GATC	5 cut(s)	29, 115, 307, 376, 454
MboII	GAAGA	4 cut(s)	4, 370, 958, 1086
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	744, 893
MlyI	GAGTC	3 cut(s)	355, 636, 1057
MmeI	TCCRAC	2 cut(s)	867, 1030
MnlI	CCTC	8 cut(s)	199, 287, 422, 850, 873, 1152, 1227, 1269
MroI	TCCGGA	1 cut(s)	1261
MseI	TTAA	5 cut(s)	161, 204, 546, 1080, 1369
MslI	CAYNNNNRTG	3 cut(s)	238, 757, 909
MspA1I	CMGCKG	1 cut(s)	830
MspCI	CTTAAG	1 cut(s)	160
MspI	CCGG	4 cut(s)	387, 555, 578, 1262
MspR9I	CCNGG	7 cut(s)	237, 387, 555, 561, 680, 789, 998
Mva1269I	GAATGC	1 cut(s)	1187
MvaI	CCWGG	5 cut(s)	237, 561, 680, 789, 998
MwoI	GCNNNNNNNGC	6 cut(s)	107, 689, 753, 762, 836, 1138
NciI	CCSGG	2 cut(s)	387, 555
NdeII	GATC	5 cut(s)	29, 115, 307, 376, 454
NlaIV	GGNNCC	3 cut(s)	234, 505, 995
NmuCI	GTSAC	2 cut(s)	628, 655
NspI	RCATGY	5 cut(s)	702, 756, 889, 914, 1307
PagI	TCATGA	1 cut(s)	1326
PciI	ACATGT	2 cut(s)	698, 885
PctI	GAATGC	1 cut(s)	1187
PfeI	GAWTC	3 cut(s)	25, 803, 809
PflMI	CCANNNNNTGG	3 cut(s)	150, 1098, 1289
PfoI	TCCNGGA	1 cut(s)	787
PkrI	GCNGC	5 cut(s)	469, 472, 691, 767, 1302
PleI	GAGTC	3 cut(s)	355, 635, 1057
PpsI	GAGTC	3 cut(s)	355, 635, 1057
Ppu21I	YACGTR	1 cut(s)	928
PscI	ACATGT	2 cut(s)	698, 885
PshBI	ATTAAT	1 cut(s)	1080
Psp6I	CCWGG	5 cut(s)	235, 559, 678, 787, 996
PspGI	CCWGG	5 cut(s)	235, 559, 678, 787, 996
PspN4I	GGNNCC	3 cut(s)	234, 505, 995
PspPI	GGNCC	3 cut(s)	557, 575, 1139
PstI	CTGCAG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	3 cut(s)	435, 930, 1155
RsaNI	GTAC	3 cut(s)	434, 929, 1154
RseI	CAYNNNNRTG	3 cut(s)	238, 757, 909
SaqAI	TTAA	5 cut(s)	161, 204, 546, 1080, 1369
SatI	GCNGC	5 cut(s)	468, 471, 690, 766, 1301
Sau3AI	GATC	5 cut(s)	29, 115, 307, 376, 454
Sau96I	GGNCC	3 cut(s)	557, 575, 1139
ScaI	AGTACT	1 cut(s)	435
SchI	GAGTC	3 cut(s)	355, 636, 1057
ScrFI	CCNGG	7 cut(s)	237, 387, 555, 561, 680, 789, 998
SduI	GDGCHC	2 cut(s)	744, 893
SexAI	ACCWGGT	1 cut(s)	996
SfaNI	GCATC	4 cut(s)	863, 1119, 1242, 1255
SfcI	CTRYAG	2 cut(s)	102, 468
SinI	GGWCC	2 cut(s)	557, 575
SmiMI	CAYNNNNRTG	3 cut(s)	238, 757, 909
SmlI	CTYRAG	2 cut(s)	160, 633
SmoI	CTYRAG	2 cut(s)	160, 633
SnaBI	TACGTA	1 cut(s)	928
SspMI	CTAG	2 cut(s)	248, 866
StyD4I	CCNGG	7 cut(s)	235, 385, 553, 559, 678, 787, 996
TaaI	ACNGT	5 cut(s)	350, 955, 1158, 1247, 1278
TaiI	ACGT	4 cut(s)	662, 738, 930, 1112
TaqI	TCGA	5 cut(s)	28, 123, 1058, 1219, 1340
TatI	WGTACW	2 cut(s)	433, 1153
TfiI	GAWTC	3 cut(s)	25, 803, 809
Tru1I	TTAA	5 cut(s)	161, 204, 546, 1080, 1369
Tru9I	TTAA	5 cut(s)	161, 204, 546, 1080, 1369
TseFI	GTSAC	2 cut(s)	628, 655
TseI	GCWGC	5 cut(s)	467, 470, 689, 765, 1300
Tsp45I	GTSAC	2 cut(s)	628, 655
TspDTI	ATGAA	6 cut(s)	85, 432, 705, 744, 893, 992
TspGWI	ACGGA	1 cut(s)	147
Van91I	CCANNNNNTGG	3 cut(s)	150, 1098, 1289
Vha464I	CTTAAG	1 cut(s)	160
VpaK11BI	GGWCC	2 cut(s)	557, 575
VspI	ATTAAT	1 cut(s)	1080
XagI	CCTNNNNNAGG	1 cut(s)	683
XapI	RAATTY	3 cut(s)	41, 326, 1285
XceI	RCATGY	5 cut(s)	702, 756, 889, 914, 1307
XmiI	GTMKAC	1 cut(s)	566
XspI	CTAG	2 cut(s)	248, 866
ZrmI	AGTACT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.