Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001097.1

Orthogroup ID

OG0004894

Physical Location & Seq

Genomic Coordinates Reverse (-)

179877 .. 184624

Gene Structure 4748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001097.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

atggcacgctggggtggtccgggttgcacagaagtggcactggtctgctctgggtcagaactaactatagattctctgccttggttggtgggtggtacgattgttgctttcagtggtggtggttgtgccaacgggtacatagtcatacacatggacaatctaacaggaaaaatggggtttctgttgtccaagttaaccagctttgccactgtccttctatttgtgctttgttgcttcagcttcagctcaacagatgcatatgatcctcttgatcccaatggcaacatcacgattaagtgggatattataagctggacccctgatggctatgttgctgttgttaccatttataactaccagcagtatagacacattcaagcaccagggtggtcgctaggatggacatgggcaaagaaggaggtgatttgggacatggtcggaggacaagctaccgagcaaggggactgttcaagatttaagacaactcccccgcattgctgtaaaaagaaaccaaccattattgatctactccctggaactccgtacaataagcaatattccaattgctgcaaaggtggagtgctgagttcatggatgcaggatccagccaacgctgcagcttcttttcaactaagtgttggtcaagcgggaaccagcaatagaacagttaagcatccaaaaaacttcactctaatgggacctggaccagggtacacttgtggtgctgcaagagttgtcaaaccaactaaatacttttctccagataaaaggcgagtctctcaagtcatgatgacatggaagttgacatgcacatattcacagtttctggctcagaaaactcctgcttgctgtgtctcactgtcttcgttctacaatgacacagtagtgccctgcccaatatgttcttgtggctgtcaaaacaacataactcatccaggaagctgtgtagatccaaagtctccatatttggcttcagttgtttcagctgctgaaaaaaattcgcctttggttcgatgtactcgccatatgtgcccgatcagagttcattggcatgtcaagctgaattacagagaatactggcgagtgaaggttacagttacaaactttgactacagcaggaattattcagattggaatttggttatccagcatccaaactttgacaatctgacccaagttttcagcttcaactcaaagtccttgaccccttatggaaccataaatgatactgcaatgctgtggggaatcaagttctacaacgatctgctgatgcaatcggggcctgtcggtaatgtgcagtcagagctgcttttccggaagaatccagcaactttcacttttgagaagggttgggctttcccgagaagaatctctttcaatggtgatacttgtgtaatgccacctccagacgcctttccatatttgccaaatgctggttctcgacagtatatctctctgctgacactaatcatgatttgtgcatcgacttttgcatttacatatgcttatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

504

Amino Acids

55.95

Weight (kDa)

8.86

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02210 AT3G29810
fragaria_vesca	FvH4_6g46460 FvH4_6g46530
malus_domestica	MD09G1072800.v1.1 MD17G1064200.v1.1
prunus_persica	Prupe.3G250400_v2.0.a1 Prupe.3G250400_v2.0.a1
pyrus_communis	pycom12433g00030 pycom17g06430
rosa_chinensis	RchiOBHm_Chr2g0153051 RchiOBHm_Chr2g0165011 RchiOBHm_Chr2g0165171 RchiOBHm_Chr5g0001191
rosa_multiflora	Rmu_sc0001097.1_g000020 Rmu_sc0001097.1_g000043
rosa_roxburghii	Rroxscaffold_2G00085970 Rroxscaffold_2G00086120
rosa_rugosa	Rorug02G0512200 Rorug02G0512300 Rorug02G0512900
rosa_samantha	Rh2AG580300 Rh2AG581100 Rh2BG591600 Rh2BG592400 Rh2CG562100 Rh2CG563100 Rh2DG601700 Rh2DG602400
rosa_wichuraiana	Rw2G048170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	308, 351
AccB7I	CCANNNNNTGG	1 cut(s)	1433
AccIII	TCCGGA	1 cut(s)	1314
AciI	CCGC	2 cut(s)	491, 647
AclWI	GGATC	5 cut(s)	257, 266, 596, 609, 944
AcsI	RAATTY	2 cut(s)	997, 1135
AcuI	CTGAAG	3 cut(s)	220, 226, 957
AcyI	GRCGYC	1 cut(s)	1410
AfaI	GTAC	5 cut(s)	97, 137, 545, 713, 1018
AfiI	CCNNNNNNNGG	3 cut(s)	459, 707, 1433
AgsI	TTSAA	5 cut(s)	377, 471, 629, 1189, 1378
AjnI	CCWGG	5 cut(s)	382, 532, 700, 706, 934
AjuI	GAANNNNNNNTTGG	2 cut(s)	1420, 1452
AleI	CACNNNNGTG	3 cut(s)	32, 385, 884
Alw26I	GTCTC	3 cut(s)	781, 859, 963
AlwI	GGATC	5 cut(s)	257, 266, 596, 609, 944
AlwNI	CAGNNNCTG	2 cut(s)	826, 989
Ama87I	CYCGRG	1 cut(s)	1360
Aor13HI	TCCGGA	1 cut(s)	1314
AoxI	GGCC	1 cut(s)	1280
ApeKI	GCWGC	6 cut(s)	567, 614, 617, 725, 986, 1306
ApoI	RAATTY	2 cut(s)	997, 1135
AspS9I	GGNCC	5 cut(s)	17, 315, 698, 704, 1280
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	433, 1394
AvaI	CYCGRG	1 cut(s)	1360
AvaII	GGWCC	4 cut(s)	17, 315, 698, 704
BaeGI	GKGCMC	2 cut(s)	891, 1034
BaeI	ACNNNNGTAYC	6 cut(s)	87, 120, 703, 736, 1377, 1410
BamHI	GGATCC	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	855
BbvI	GCAGC	6 cut(s)	554, 601, 629, 712, 973, 1293
BccI	CCATC	2 cut(s)	317, 393
BciT130I	CCWGG	5 cut(s)	384, 534, 702, 708, 936
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	3 cut(s)	781, 859, 963
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	3 cut(s)	66, 615, 1111
BisI	GCNGC	6 cut(s)	568, 615, 618, 726, 987, 1307
BlsI	GCNGC	6 cut(s)	569, 616, 619, 727, 988, 1308
Bme1390I	CCNGG	6 cut(s)	21, 384, 534, 702, 708, 936
Bme18I	GGWCC	4 cut(s)	17, 315, 698, 704
BmeT110I	CYCGRG	1 cut(s)	1360
BmgT120I	GGNCC	5 cut(s)	17, 315, 698, 704, 1280
BmiI	GGNNCC	6 cut(s)	317, 603, 652, 699, 1216, 1281
BmrFI	CCNGG	6 cut(s)	21, 384, 534, 702, 708, 936
BmsI	GCATC	6 cut(s)	244, 585, 682, 1159, 1260, 1490
BpiI	GAAGAC	1 cut(s)	855
BpmI	CTGGAG	2 cut(s)	744, 1389
BpuEI	CTTGAG	1 cut(s)	765
BpuMI	CCSGG	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	1410
BsaJI	CCNNGG	4 cut(s)	80, 383, 532, 707
BsaWI	WCCGGW	1 cut(s)	1314
Bsc4I	CCNNNNNNNGG	3 cut(s)	459, 707, 1433
Bse1I	ACTGG	2 cut(s)	45, 1082
Bse3DI	GCAATG	2 cut(s)	493, 1239
BseAI	TCCGGA	1 cut(s)	1314
BseBI	CCWGG	5 cut(s)	384, 534, 702, 708, 936
BseDI	CCNNGG	4 cut(s)	80, 383, 532, 707
BseGI	GGATG	5 cut(s)	404, 600, 673, 931, 1150
BseLI	CCNNNNNNNGG	3 cut(s)	459, 707, 1433
BseMI	GCAATG	2 cut(s)	493, 1239
BseMII	CTCAG	2 cut(s)	575, 845
BseNI	ACTGG	2 cut(s)	45, 1082
BseSI	GKGCMC	2 cut(s)	891, 1034
BseXI	GCAGC	6 cut(s)	554, 601, 629, 712, 973, 1293
BseYI	CCCAGC	1 cut(s)	9
BsgI	GTGCAG	1 cut(s)	1316
BshFI	GGCC	1 cut(s)	1282
BsiHKCI	CYCGRG	1 cut(s)	1360
BsiSI	CCGG	2 cut(s)	20, 1315
BslFI	GGGAC	3 cut(s)	443, 476, 711
BslI	CCNNNNNNNGG	3 cut(s)	459, 707, 1433
BsmAI	GTCTC	3 cut(s)	781, 859, 963
BsmFI	GGGAC	3 cut(s)	443, 476, 711
BsnI	GGCC	1 cut(s)	1282
BsoBI	CYCGRG	1 cut(s)	1360
Bsp1286I	GDGCHC	2 cut(s)	891, 1034
Bsp13I	TCCGGA	1 cut(s)	1314
Bsp143I	GATC	7 cut(s)	262, 271, 523, 601, 949, 1035, 1261
BspACI	CCGC	2 cut(s)	491, 647
BspANI	GGCC	1 cut(s)	1282
BspCNI	CTCAG	2 cut(s)	576, 844
BspEI	TCCGGA	1 cut(s)	1314
BspHI	TCATGA	2 cut(s)	786, 1470
BspLI	GGNNCC	6 cut(s)	317, 603, 652, 699, 1216, 1281
BspMAI	CTGCAG	1 cut(s)	619
BspPI	GGATC	5 cut(s)	257, 266, 596, 609, 944
BsrDI	GCAATG	2 cut(s)	493, 1239
BsrI	ACTGG	2 cut(s)	45, 1082
BssECI	CCNNGG	4 cut(s)	80, 383, 532, 707
BssMI	GATC	7 cut(s)	262, 271, 523, 601, 949, 1035, 1261
BssNI	GRCGYC	1 cut(s)	1410
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	5 cut(s)	384, 534, 702, 708, 936
Bst4CI	ACNGT	8 cut(s)	211, 467, 667, 822, 861, 883, 1096, 1446
BstACI	GRCGYC	1 cut(s)	1410
BstC8I	GCNNGC	2 cut(s)	7, 847
BstDEI	CTNAG	3 cut(s)	584, 632, 831
BstENI	CCTNNNNNAGG	1 cut(s)	705
BstF5I	GGATG	5 cut(s)	404, 600, 673, 931, 1150
BstKTI	GATC	7 cut(s)	265, 274, 526, 604, 952, 1038, 1264
BstMAI	GTCTC	3 cut(s)	781, 859, 963
BstMBI	GATC	7 cut(s)	262, 271, 523, 601, 949, 1035, 1261
BstMWI	GCNNNNNNNGC	5 cut(s)	614, 1029, 1057, 1279, 1303
BstNI	CCWGG	5 cut(s)	384, 534, 702, 708, 936
BstNSI	RCATGY	2 cut(s)	810, 1055
BstSCI	CCNGG	6 cut(s)	19, 382, 532, 700, 706, 934
BstSFI	CTRYAG	3 cut(s)	66, 615, 1111
BstSLI	GKGCMC	2 cut(s)	891, 1034
BstV1I	GCAGC	6 cut(s)	554, 601, 629, 712, 973, 1293
BstV2I	GAAGAC	1 cut(s)	855
BstX2I	RGATCY	2 cut(s)	601, 949
BstYI	RGATCY	2 cut(s)	601, 949
BsuRI	GGCC	1 cut(s)	1282
BtsCI	GGATG	5 cut(s)	404, 600, 673, 931, 1150
BtsIMutI	CAGTG	4 cut(s)	38, 118, 207, 857
Cac8I	GCNNGC	2 cut(s)	7, 847
CaiI	CAGNNNCTG	2 cut(s)	826, 989
CciI	TCATGA	2 cut(s)	786, 1470
Cfr13I	GGNCC	5 cut(s)	17, 315, 698, 704, 1280
CseI	GACGC	1 cut(s)	1418
Csp6I	GTAC	5 cut(s)	96, 136, 544, 712, 1017
CviAII	CATG	9 cut(s)	151, 405, 433, 591, 787, 795, 807, 1052, 1471
CviQI	GTAC	5 cut(s)	96, 136, 544, 712, 1017
DdeI	CTNAG	3 cut(s)	584, 632, 831
DpnI	GATC	7 cut(s)	264, 273, 525, 603, 951, 1037, 1263
DpnII	GATC	7 cut(s)	262, 271, 523, 601, 949, 1035, 1261
Eco130I	CCWWGG	1 cut(s)	80
Eco47I	GGWCC	4 cut(s)	17, 315, 698, 704
Eco57I	CTGAAG	3 cut(s)	220, 226, 957
Eco88I	CYCGRG	1 cut(s)	1360
EcoNI	CCTNNNNNAGG	1 cut(s)	705
EcoO109I	RGGNCCY	2 cut(s)	698, 1280
EcoRII	CCWGG	5 cut(s)	382, 532, 700, 706, 934
EcoT14I	CCWWGG	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	9 cut(s)	154, 408, 436, 594, 790, 798, 810, 1055, 1474
FalI	AAGNNNNNCTT	2 cut(s)	1357, 1389
FaqI	GGGAC	3 cut(s)	443, 476, 711
FatI	CATG	9 cut(s)	150, 404, 432, 590, 786, 794, 806, 1051, 1470
FauI	CCCGC	2 cut(s)	498, 640
FauNDI	CATATG	3 cut(s)	259, 1026, 1501
Fnu4HI	GCNGC	6 cut(s)	568, 615, 618, 726, 987, 1307
FokI	GGATG	5 cut(s)	411, 607, 660, 918, 1137
Fsp4HI	GCNGC	6 cut(s)	568, 615, 618, 726, 987, 1307
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	6 cut(s)	568, 615, 618, 726, 987, 1307
GsaI	CCCAGC	1 cut(s)	13
GsuI	CTGGAG	2 cut(s)	744, 1389
HaeIII	GGCC	1 cut(s)	1282
HapII	CCGG	2 cut(s)	20, 1315
HgaI	GACGC	1 cut(s)	1418
Hin1I	GRCGYC	1 cut(s)	1410
Hin1II	CATG	9 cut(s)	154, 408, 436, 594, 790, 798, 810, 1055, 1474
HincII	GTYRAC	2 cut(s)	195, 804
HindII	GTYRAC	2 cut(s)	195, 804
HinfI	GANTC	5 cut(s)	71, 774, 1245, 1321, 1368
HpaI	GTTAAC	1 cut(s)	195
HpaII	CCGG	2 cut(s)	20, 1315
HphI	GGTGA	2 cut(s)	433, 1394
Hpy166II	GTNNAC	3 cut(s)	195, 714, 804
Hpy188I	TCNGA	7 cut(s)	58, 440, 834, 1040, 1129, 1170, 1303
Hpy8I	GTNNAC	3 cut(s)	195, 714, 804
HpyAV	CCTTC	4 cut(s)	224, 409, 1081, 1339
HpyCH4III	ACNGT	8 cut(s)	211, 467, 667, 822, 861, 883, 1096, 1446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	614, 1029, 1057, 1279, 1303
HpyF3I	CTNAG	3 cut(s)	584, 632, 831
Hsp92I	GRCGYC	1 cut(s)	1410
Hsp92II	CATG	9 cut(s)	154, 408, 436, 594, 790, 798, 810, 1055, 1474
Kpn2I	TCCGGA	1 cut(s)	1314
KspAI	GTTAAC	1 cut(s)	195
Kzo9I	GATC	7 cut(s)	262, 271, 523, 601, 949, 1035, 1261
Lsp1109I	GCAGC	6 cut(s)	554, 601, 629, 712, 973, 1293
LweI	GCATC	6 cut(s)	244, 585, 682, 1159, 1260, 1490
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	3 cut(s)	340, 1090, 1096
MalI	GATC	7 cut(s)	264, 273, 525, 603, 951, 1037, 1263
MboI	GATC	7 cut(s)	262, 271, 523, 601, 949, 1035, 1261
MboII	GAAGA	3 cut(s)	855, 1330, 1377
MfeI	CAATTG	1 cut(s)	562
MflI	RGATCY	2 cut(s)	601, 949
MhlI	GDGCHC	2 cut(s)	891, 1034
MluCI	AATT	5 cut(s)	562, 997, 1063, 1120, 1135
MlyI	GAGTC	1 cut(s)	783
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	4 cut(s)	276, 412, 434, 1413
Mph1103I	ATGCAT	1 cut(s)	259
MroI	TCCGGA	1 cut(s)	1314
MseI	TTAA	5 cut(s)	194, 294, 477, 669, 1513
MslI	CAYNNNNRTG	6 cut(s)	32, 149, 385, 692, 884, 1050
MspA1I	CMGCKG	1 cut(s)	986
MspI	CCGG	2 cut(s)	20, 1315
MspR9I	CCNGG	6 cut(s)	21, 384, 534, 702, 708, 936
MunI	CAATTG	1 cut(s)	562
MvaI	CCWGG	5 cut(s)	384, 534, 702, 708, 936
MwoI	GCNNNNNNNGC	5 cut(s)	614, 1029, 1057, 1279, 1303
NciI	CCSGG	1 cut(s)	21
NdeI	CATATG	3 cut(s)	259, 1026, 1501
NdeII	GATC	7 cut(s)	262, 271, 523, 601, 949, 1035, 1261
NlaIII	CATG	9 cut(s)	154, 408, 436, 594, 790, 798, 810, 1055, 1474
NlaIV	GGNNCC	6 cut(s)	317, 603, 652, 699, 1216, 1281
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	2 cut(s)	810, 1055
OliI	CACNNNNGTG	3 cut(s)	32, 385, 884
PagI	TCATGA	2 cut(s)	786, 1470
PfeI	GAWTC	4 cut(s)	71, 1245, 1321, 1368
PflFI	GACNNNGTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	1433
PfoI	TCCNGGA	1 cut(s)	934
PkrI	GCNGC	6 cut(s)	569, 616, 619, 727, 988, 1308
PleI	GAGTC	1 cut(s)	782
PpsI	GAGTC	1 cut(s)	782
PpuMI	RGGWCCY	1 cut(s)	698
PsiI	TTATAA	2 cut(s)	308, 351
Psp5II	RGGWCCY	1 cut(s)	698
Psp6I	CCWGG	5 cut(s)	382, 532, 700, 706, 934
PspFI	CCCAGC	1 cut(s)	9
PspGI	CCWGG	5 cut(s)	382, 532, 700, 706, 934
PspN4I	GGNNCC	6 cut(s)	317, 603, 652, 699, 1216, 1281
PspPI	GGNCC	5 cut(s)	17, 315, 698, 704, 1280
PspPPI	RGGWCCY	1 cut(s)	698
PstI	CTGCAG	1 cut(s)	619
PstNI	CAGNNNCTG	2 cut(s)	826, 989
PsuI	RGATCY	2 cut(s)	601, 949
PsyI	GACNNNGTC	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	986
RsaI	GTAC	5 cut(s)	97, 137, 545, 713, 1018
RsaNI	GTAC	5 cut(s)	96, 136, 544, 712, 1017
RseI	CAYNNNNRTG	6 cut(s)	32, 149, 385, 692, 884, 1050
SaqAI	TTAA	5 cut(s)	194, 294, 477, 669, 1513
SatI	GCNGC	6 cut(s)	568, 615, 618, 726, 987, 1307
Sau3AI	GATC	7 cut(s)	262, 271, 523, 601, 949, 1035, 1261
Sau96I	GGNCC	5 cut(s)	17, 315, 698, 704, 1280
SchI	GAGTC	1 cut(s)	783
ScrFI	CCNGG	6 cut(s)	21, 384, 534, 702, 708, 936
SduI	GDGCHC	2 cut(s)	891, 1034
SfaNI	GCATC	6 cut(s)	244, 585, 682, 1159, 1260, 1490
SfcI	CTRYAG	3 cut(s)	66, 615, 1111
SinI	GGWCC	4 cut(s)	17, 315, 698, 704
SmiMI	CAYNNNNRTG	6 cut(s)	32, 149, 385, 692, 884, 1050
SmlI	CTYRAG	1 cut(s)	780
SmoI	CTYRAG	1 cut(s)	780
Sse9I	AATT	5 cut(s)	562, 997, 1063, 1120, 1135
SsiI	CCGC	2 cut(s)	491, 647
SspI	AATATT	1 cut(s)	557
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	6 cut(s)	19, 382, 532, 700, 706, 934
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	8 cut(s)	211, 467, 667, 822, 861, 883, 1096, 1446
TaqI	TCGA	3 cut(s)	1012, 1441, 1484
TasI	AATT	5 cut(s)	562, 997, 1063, 1120, 1135
TatI	WGTACW	1 cut(s)	1016
TfiI	GAWTC	4 cut(s)	71, 1245, 1321, 1368
Tru1I	TTAA	5 cut(s)	194, 294, 477, 669, 1513
Tru9I	TTAA	5 cut(s)	194, 294, 477, 669, 1513
TscAI	CASTG	4 cut(s)	45, 118, 214, 864
TseI	GCWGC	6 cut(s)	567, 614, 617, 725, 986, 1306
TspDTI	ATGAA	2 cut(s)	579, 1034
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	4 cut(s)	45, 118, 214, 864
Tth111I	GACNNNGTC	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	1433
VpaK11BI	GGWCC	4 cut(s)	17, 315, 698, 704
XagI	CCTNNNNNAGG	1 cut(s)	705
XapI	RAATTY	2 cut(s)	997, 1135
XceI	RCATGY	2 cut(s)	810, 1055
XspI	CTAG	1 cut(s)	395
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.