Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004894

Physical Location & Seq

Genomic Coordinates Forward (+)

80046145 .. 80049490

Gene Structure 3346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53299

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGGGTTTCTGTTGTCCAAGCTAACCAGTTTGGTCACTGTTGTTCTATTTGGGCTTGGTTTCTGCATCTTCTTCACCTCAACAGATGCATATGATCCGCTTGATCCTAATGGCAACATCACAATTAAGTGGGATATTATAAGCTGGACACCTGATGGCTATGTTGCCGTTGTTACGCTTTTTAACTTCCAGCAGTATAGACACATTCAAGCACCAGGCTGGACGCTTGGATGGACATGGGCAAAGAAGGAGGTAATTTGGAACATGGTGGGAGGACAAGCCACCGATCAAGGCGATTGTTCAAAATTTAAGACAACTCCCCCACATTGCTGCAAAAAGACCCCAACCATTGTTGATCTACTCCCTGGAACTCCGTACAATCAGCAGTATTCCAATTGTTGTAGAGGGGGAGTGCTGAGCTCATGGATACAGGATCCATCCAATGCTGCAGCTTCTTTTCAAATAAGTGTTGGTCGATCTGGAACGACCAACAAGACAGTTAGGCTTCCGAAAAACTATACCCTATTAGGACCTGGGCCTGGGTACACTTGTGGTGTGGCAAAAGTTGTTAAACCAACTAAATTCTTTACAGCTGATAAAAGAAGAGTCTCTCAAGCCCTGATGACATGGAATGTGACATGCACATATTCACAGTTCCTGGCTCAGAAAGCTCCTACTTGCTGTGTCTCGTTGTCTTCCTTCTACAATGACACAGTAGTTCCCTGCCCGACATGTTCGTGTGGCTGCCAAAACAACATAACTCATCCTGGAAGCTGTGTAGTGCCAGAGTCTCCGTATTTGGCTTCAGTTGTTTCAGCTGCTGATAAGAATTCACCTTTGGTTAGATGTACTAGCCATATGTGCCCTATCAGAGTTCATTGGCACGTCAAGCTGAATTACAAGGAATACTGGCGAGTGAAGGTCACAATTACAAACTTTGATTACAGGAGGAATTATTCTGATTGGAACTTGGTTGCCCAACACCCAAATTTTGACAATCTTACCCAAATTTTCAGCTTCAACGCAAAGTCCTTGACTCCTTATGGAACCATAAATGATACTGTAATGCTATGGGGAACCAAGTTCTACAACGACATGCTGGTGCAATCTGGGCCTCTCGGTAATGTGCAGTCAGAGATGCTTTTCCGGAAGAATCCAGCCACCTTCACTTTTGACAAGGGATGGGCGTTCCCAAGAAGGATCTATTTCAATGGTGATACTTGTGTAATGCCACCCCCAGATGCCTTTCCACATTTGCCAAATGCTGGTTTCCGACAGTATGTTTCTCTGCTTACTGTGATCATGATTTCAGCATCAACATTTGCATTCACATATGCCTATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

448

Amino Acids

50.11

Weight (kDa)

9.01

Isoelectric Point (pI)

30.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	54 - 217	1.5e-67	COBRA-like protein
COB_C	PF25079	226 - 417	2.1e-58	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02210 AT3G29810
fragaria_vesca	FvH4_6g46460 FvH4_6g46530
malus_domestica	MD09G1072800.v1.1 MD17G1064200.v1.1
prunus_persica	Prupe.3G250400_v2.0.a1 Prupe.3G250400_v2.0.a1
pyrus_communis	pycom12433g00030 pycom17g06430
rosa_chinensis	RchiOBHm_Chr2g0153051 RchiOBHm_Chr2g0165011 RchiOBHm_Chr2g0165171 RchiOBHm_Chr5g0001191
rosa_multiflora	Rmu_sc0001097.1_g000020 Rmu_sc0001097.1_g000043
rosa_roxburghii	Rroxscaffold_2G00085970 Rroxscaffold_2G00086120
rosa_rugosa	Rorug02G0512200 Rorug02G0512300 Rorug02G0512900
rosa_samantha	Rh2AG580300 Rh2AG581100 Rh2BG591600 Rh2BG592400 Rh2CG562100 Rh2CG563100 Rh2DG601700 Rh2DG602400
rosa_wichuraiana	Rw2G048170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	1265
AccIII	TCCGGA	1 cut(s)	1146
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	5 cut(s)	89, 98, 428, 441, 1208
AcsI	RAATTY	5 cut(s)	305, 581, 829, 988, 1008
AcuI	CTGAAG	1 cut(s)	789
AfaI	GTAC	3 cut(s)	377, 545, 850
AfiI	CCNNNNNNNGG	2 cut(s)	539, 1265
AflIII	ACRYGT	1 cut(s)	731
AgsI	TTSAA	5 cut(s)	209, 303, 461, 1021, 1210
AjiI	CACGTC	1 cut(s)	886
AjnI	CCWGG	6 cut(s)	214, 364, 532, 538, 657, 766
AjuI	GAANNNNNNNTTGG	2 cut(s)	821, 853
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	3 cut(s)	613, 691, 795
AlwI	GGATC	5 cut(s)	89, 98, 428, 441, 1208
AlwNI	CAGNNNCTG	2 cut(s)	658, 821
Aor13HI	TCCGGA	1 cut(s)	1146
AoxI	GGCC	2 cut(s)	536, 1112
ApeKI	GCWGC	5 cut(s)	330, 446, 449, 744, 818
ApoI	RAATTY	5 cut(s)	305, 581, 829, 988, 1008
AspS9I	GGNCC	3 cut(s)	530, 536, 1112
AsuHPI	GGTGA	3 cut(s)	67, 825, 1226
AvaII	GGWCC	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	866
BaeI	ACNNNNGTAYC	4 cut(s)	535, 568, 1209, 1242
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	5 cut(s)	317, 433, 461, 731, 805
BccI	CCATC	4 cut(s)	149, 225, 445, 1176
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	6 cut(s)	216, 366, 534, 540, 659, 768
BciVI	GTATCC	1 cut(s)	420
BclI	TGATCA	1 cut(s)	1299
BcoDI	GTCTC	3 cut(s)	613, 691, 795
BfaI	CTAG	1 cut(s)	852
BfmI	CTRYAG	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	420
BisI	GCNGC	5 cut(s)	331, 447, 450, 745, 819
BlpI	GCTNAGC	1 cut(s)	416
BlsI	GCNGC	5 cut(s)	332, 448, 451, 746, 820
Bme1390I	CCNGG	6 cut(s)	216, 366, 534, 540, 659, 768
Bme18I	GGWCC	1 cut(s)	530
BmgBI	CACGTC	1 cut(s)	886
BmgT120I	GGNCC	3 cut(s)	530, 536, 1112
BmiI	GGNNCC	3 cut(s)	435, 1048, 1078
BmrFI	CCNGG	6 cut(s)	216, 366, 534, 540, 659, 768
BmsI	GCATC	5 cut(s)	75, 76, 1128, 1231, 1322
BpiI	GAAGAC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	597
BsaJI	CCNNGG	3 cut(s)	364, 533, 539
BsaWI	WCCGGW	1 cut(s)	1146
Bsc4I	CCNNNNNNNGG	2 cut(s)	539, 1265
Bse1I	ACTGG	2 cut(s)	27, 914
Bse3DI	GCAATG	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	1146
BseBI	CCWGG	6 cut(s)	216, 366, 534, 540, 659, 768
BseDI	CCNNGG	3 cut(s)	364, 533, 539
BseGI	GGATG	4 cut(s)	236, 437, 763, 1187
BseLI	CCNNNNNNNGG	2 cut(s)	539, 1265
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	407, 677
BseNI	ACTGG	2 cut(s)	27, 914
BseSI	GKGCMC	1 cut(s)	866
BseXI	GCAGC	5 cut(s)	317, 433, 461, 731, 805
BsgI	GTGCAG	1 cut(s)	1148
BshFI	GGCC	2 cut(s)	538, 1114
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	1147
BslI	CCNNNNNNNGG	2 cut(s)	539, 1265
BsmAI	GTCTC	3 cut(s)	613, 691, 795
BsmI	GAATGC	1 cut(s)	1325
BsnI	GGCC	2 cut(s)	538, 1114
Bsp1286I	GDGCHC	2 cut(s)	422, 866
Bsp13I	TCCGGA	1 cut(s)	1146
Bsp143I	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1200, 1299
Bsp1720I	GCTNAGC	1 cut(s)	416
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	2 cut(s)	538, 1114
BspCNI	CTCAG	2 cut(s)	408, 676
BspEI	TCCGGA	1 cut(s)	1146
BspHI	TCATGA	1 cut(s)	1302
BspLI	GGNNCC	3 cut(s)	435, 1048, 1078
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	5 cut(s)	89, 98, 428, 441, 1208
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	27, 914
BssECI	CCNNGG	3 cut(s)	364, 533, 539
BssMI	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1200, 1299
Bst2UI	CCWGG	6 cut(s)	216, 366, 534, 540, 659, 768
Bst4CI	ACNGT	7 cut(s)	40, 499, 654, 715, 1063, 1278, 1297
Bst6I	CTCTTC	1 cut(s)	598
BstDEI	CTNAG	3 cut(s)	416, 663, 1344
BstF5I	GGATG	4 cut(s)	236, 437, 763, 1187
BstKTI	GATC	8 cut(s)	97, 106, 289, 358, 436, 479, 1203, 1302
BstMAI	GTCTC	3 cut(s)	613, 691, 795
BstMBI	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1200, 1299
BstMWI	GCNNNNNNNGC	4 cut(s)	668, 861, 889, 1111
BstNI	CCWGG	6 cut(s)	216, 366, 534, 540, 659, 768
BstNSI	RCATGY	3 cut(s)	642, 735, 1099
BstSCI	CCNGG	6 cut(s)	214, 364, 532, 538, 657, 766
BstSFI	CTRYAG	1 cut(s)	447
BstSLI	GKGCMC	1 cut(s)	866
BstV1I	GCAGC	5 cut(s)	317, 433, 461, 731, 805
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	2 cut(s)	433, 1200
BstYI	RGATCY	2 cut(s)	433, 1200
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	538, 1114
BtrI	CACGTC	1 cut(s)	886
BtsCI	GGATG	4 cut(s)	236, 437, 763, 1187
BtsIMutI	CAGTG	1 cut(s)	36
CaiI	CAGNNNCTG	2 cut(s)	658, 821
CciI	TCATGA	1 cut(s)	1302
Cfr13I	GGNCC	3 cut(s)	530, 536, 1112
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	3 cut(s)	376, 544, 849
CviAII	CATG	8 cut(s)	237, 265, 423, 627, 639, 732, 1096, 1303
CviQI	GTAC	3 cut(s)	376, 544, 849
DdeI	CTNAG	3 cut(s)	416, 663, 1344
DpnI	GATC	8 cut(s)	96, 105, 288, 357, 435, 478, 1202, 1301
DpnII	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1200, 1299
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
Ecl136II	GAGCTC	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	530
Eco53kI	GAGCTC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	789
EcoICRI	GAGCTC	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	6 cut(s)	214, 364, 532, 538, 657, 766
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	422
FaeI	CATG	8 cut(s)	240, 268, 426, 630, 642, 735, 1099, 1306
FatI	CATG	8 cut(s)	236, 264, 422, 626, 638, 731, 1095, 1302
FauNDI	CATATG	3 cut(s)	91, 858, 1333
FbaI	TGATCA	1 cut(s)	1299
Fnu4HI	GCNGC	5 cut(s)	331, 447, 450, 745, 819
FokI	GGATG	4 cut(s)	243, 424, 750, 1194
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	5 cut(s)	331, 447, 450, 745, 819
FspBI	CTAG	1 cut(s)	852
GluI	GCNGC	5 cut(s)	331, 447, 450, 745, 819
HaeIII	GGCC	2 cut(s)	538, 1114
HapII	CCGG	1 cut(s)	1147
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	8 cut(s)	240, 268, 426, 630, 642, 735, 1099, 1306
HinfI	GANTC	4 cut(s)	606, 788, 1036, 1153
HpaII	CCGG	1 cut(s)	1147
HphI	GGTGA	3 cut(s)	67, 825, 1226
Hpy166II	GTNNAC	1 cut(s)	546
Hpy188I	TCNGA	6 cut(s)	510, 666, 872, 961, 1135, 1274
Hpy188III	TCNNGA	3 cut(s)	480, 1147, 1303
Hpy8I	GTNNAC	1 cut(s)	546
HpyAV	CCTTC	5 cut(s)	241, 709, 913, 1174, 1191
HpyCH4III	ACNGT	7 cut(s)	40, 499, 654, 715, 1063, 1278, 1297
HpyCH4IV	ACGT	1 cut(s)	885
HpyCH4V	TGCA	8 cut(s)	66, 89, 333, 449, 642, 1105, 1129, 1325
HpyF10VI	GCNNNNNNNGC	4 cut(s)	668, 861, 889, 1111
HpyF3I	CTNAG	3 cut(s)	416, 663, 1344
HpySE526I	ACGT	1 cut(s)	885
Hsp92II	CATG	8 cut(s)	240, 268, 426, 630, 642, 735, 1099, 1306
Kpn2I	TCCGGA	1 cut(s)	1146
Ksp22I	TGATCA	1 cut(s)	1299
Kzo9I	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1200, 1299
LmnI	GCTCC	1 cut(s)	676
Lsp1109I	GCAGC	5 cut(s)	317, 433, 461, 731, 805
LweI	GCATC	5 cut(s)	75, 76, 1128, 1231, 1322
MaeI	CTAG	1 cut(s)	852
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	4 cut(s)	34, 172, 634, 922
MalI	GATC	8 cut(s)	96, 105, 288, 357, 435, 478, 1202, 1301
MboI	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1200, 1299
MboII	GAAGA	5 cut(s)	61, 64, 615, 687, 1162
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	2 cut(s)	433, 1200
MhlI	GDGCHC	2 cut(s)	422, 866
MlyI	GAGTC	3 cut(s)	615, 797, 1030
MmeI	TCCRAC	1 cut(s)	1297
MnlI	CCTC	6 cut(s)	88, 244, 266, 398, 942, 1125
Mph1103I	ATGCAT	1 cut(s)	91
MroI	TCCGGA	1 cut(s)	1146
MseI	TTAA	4 cut(s)	126, 183, 309, 570
MslI	CAYNNNNRTG	2 cut(s)	736, 1100
MspA1I	CMGCKG	2 cut(s)	593, 818
MspI	CCGG	1 cut(s)	1147
MspR9I	CCNGG	6 cut(s)	216, 366, 534, 540, 659, 768
MunI	CAATTG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	1325
MvaI	CCWGG	6 cut(s)	216, 366, 534, 540, 659, 768
MwoI	GCNNNNNNNGC	4 cut(s)	668, 861, 889, 1111
NdeI	CATATG	3 cut(s)	91, 858, 1333
NdeII	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1200, 1299
NlaIII	CATG	8 cut(s)	240, 268, 426, 630, 642, 735, 1099, 1306
NlaIV	GGNNCC	3 cut(s)	435, 1048, 1078
NmuCI	GTSAC	3 cut(s)	34, 634, 922
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	3 cut(s)	642, 735, 1099
PagI	TCATGA	1 cut(s)	1302
PciI	ACATGT	1 cut(s)	731
PctI	GAATGC	1 cut(s)	1325
PfeI	GAWTC	1 cut(s)	1153
PflMI	CCANNNNNTGG	1 cut(s)	1265
PfoI	TCCNGGA	1 cut(s)	766
PkrI	GCNGC	5 cut(s)	332, 448, 451, 746, 820
PleI	GAGTC	3 cut(s)	614, 796, 1030
PpsI	GAGTC	3 cut(s)	614, 796, 1030
PpuMI	RGGWCCY	1 cut(s)	530
PscI	ACATGT	1 cut(s)	731
PsiI	TTATAA	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	6 cut(s)	214, 364, 532, 538, 657, 766
PspGI	CCWGG	6 cut(s)	214, 364, 532, 538, 657, 766
PspN4I	GGNNCC	3 cut(s)	435, 1048, 1078
PspPI	GGNCC	3 cut(s)	530, 536, 1112
PspPPI	RGGWCCY	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	2 cut(s)	658, 821
PsuI	RGATCY	2 cut(s)	433, 1200
PvuII	CAGCTG	2 cut(s)	593, 818
RsaI	GTAC	3 cut(s)	377, 545, 850
RsaNI	GTAC	3 cut(s)	376, 544, 849
RseI	CAYNNNNRTG	2 cut(s)	736, 1100
SacI	GAGCTC	1 cut(s)	422
SaqAI	TTAA	4 cut(s)	126, 183, 309, 570
SatI	GCNGC	5 cut(s)	331, 447, 450, 745, 819
Sau3AI	GATC	8 cut(s)	94, 103, 286, 355, 433, 476, 1200, 1299
Sau96I	GGNCC	3 cut(s)	530, 536, 1112
SchI	GAGTC	3 cut(s)	615, 797, 1030
ScrFI	CCNGG	6 cut(s)	216, 366, 534, 540, 659, 768
SduI	GDGCHC	2 cut(s)	422, 866
SfaNI	GCATC	5 cut(s)	75, 76, 1128, 1231, 1322
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	2 cut(s)	736, 1100
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	852
SstI	GAGCTC	1 cut(s)	422
StyD4I	CCNGG	6 cut(s)	214, 364, 532, 538, 657, 766
TaaI	ACNGT	7 cut(s)	40, 499, 654, 715, 1063, 1278, 1297
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	1 cut(s)	475
TatI	WGTACW	1 cut(s)	848
TfiI	GAWTC	1 cut(s)	1153
Tru1I	TTAA	4 cut(s)	126, 183, 309, 570
Tru9I	TTAA	4 cut(s)	126, 183, 309, 570
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	3 cut(s)	34, 634, 922
TseI	GCWGC	5 cut(s)	330, 446, 449, 744, 818
Tsp45I	GTSAC	3 cut(s)	34, 634, 922
TspDTI	ATGAA	1 cut(s)	866
TspGWI	ACGGA	2 cut(s)	363, 783
TspRI	CASTG	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	1265
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	5 cut(s)	305, 581, 829, 988, 1008
XceI	RCATGY	3 cut(s)	642, 735, 1099
XspI	CTAG	1 cut(s)	852
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.