Rh2AG580300

cobra-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004894
Physical Location & Seq
Forward (+)
80949409 .. 80953547
4139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG580300.1

Sequence Viewer

Length: 1083 bp
ATGGTGGGAGGACAAGCCACCGATCAAGGCGATTGTTCAAAATTTAAGACAACTCCCCCACATTGCTGCAAAAAGACCCCAACCATTGTTGATCTACTCCCTGGAACTCCGTACAATCAGCAGTATTCCAATTGTTGTAGAGGGGGAGTGCTGAGCACATGGATTCAGGATCCATCCAATGCTGCAGCTTCTTTTCAAATAAGTGTTGGTCGATCTGGAACGACCAACAAGACAGTTAGGCTTCCGAAAAACTATACCCTAATGGGACCTGGGCCTGGGTACACTTGTGGTGTAGCAAAAGTTGTTAAACCAACTAAATTCTTTACAGCTGATAAAAGAAGAGTCTCTCAAGCCCTGATGACATGGAATGTGACATGCACGTATTCACAGTTCCTGGCTCATAAAGCTCCTACTTGCTGTGTCTCGTTGTCTTCCTTCTACAATGACACAGTAGTTCCCTGCCCGACATGTTCGTGCGGCTGCCAAAACAACATAACTCATCCTGGAAGCTGTGTAGTGCCAGAGTCTCCGTATTTGGCTTCAGTTGTTTCAGCTGCTGATAAGAATTCACCTTTGGTTAGATGTACTAGCCATATGTGCCCTATCAGAGTTCATTGGCACGTCAAGCTGAATTACAAGGAATACTGGCGAGTGAAGGTCACAATTACAAACTTTGATTACAGGAGGAATTATTCTGATTGGAACTTGGTTGCCCAACACCCAAATTTTGACAATCTTACCCAAATTTTCAGCTTCAACGCAAAGTCCTTGACTCCTTATGGAACCATAAATGATACTGTAATGCTATGGGGAACCAAGTTCTACAACGACATGCTGGTGCAATCTGGGCCTCTCGGTAATGTGCAGTCAGAGATGCTTTTCCGGAAGAATCCAGCCACCTTCACTTTTGACAAGGGATGGGCGTTCCCAAGAAGGATCTATTTCAATGGTGATACTTGTGTAATGCCACCCCCAGATGCCTTTCCACATTTGCCAAATGCTGGTTTCCGACAGTATGTTTCTCTGCTTACTGTGATCATGATTTCAGCATCAACATTTGCATTCACATATGCCTATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

360

Amino Acids

40.09

Weight (kDa)

9.13

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 1 - 129 7.1e-47 COBRA-like protein
COB_C PF25079 138 - 329 1.8e-58 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1001
AccIII TCCGGA 1 cut(s) 882
AciI CCGC 1 cut(s) 477
AclWI GGATC 3 cut(s) 164, 177, 944
AcsI RAATTY 5 cut(s) 41, 317, 565, 724, 744
AcuI CTGAAG 1 cut(s) 525
AfaI GTAC 3 cut(s) 113, 281, 586
AfiI CCNNNNNNNGG 2 cut(s) 275, 1001
AflIII ACRYGT 1 cut(s) 467
AgsI TTSAA 4 cut(s) 39, 197, 757, 946
AjiI CACGTC 1 cut(s) 622
AjnI CCWGG 5 cut(s) 100, 268, 274, 393, 502
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 7 cut(s) 188, 329, 407, 510, 554, 628, 753
AluI AGCT 7 cut(s) 188, 329, 407, 510, 554, 628, 753
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 3 cut(s) 349, 427, 531
AlwI GGATC 3 cut(s) 164, 177, 944
AlwNI CAGNNNCTG 2 cut(s) 394, 557
Aor13HI TCCGGA 1 cut(s) 882
AoxI GGCC 2 cut(s) 272, 848
ApeKI GCWGC 5 cut(s) 66, 182, 185, 480, 554
ApoI RAATTY 5 cut(s) 41, 317, 565, 724, 744
AspS9I GGNCC 3 cut(s) 266, 272, 848
AsuHPI GGTGA 2 cut(s) 561, 962
AvaII GGWCC 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 602
BaeI ACNNNNGTAYC 4 cut(s) 271, 304, 945, 978
BamHI GGATCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 5 cut(s) 53, 169, 197, 467, 541
BccI CCATC 2 cut(s) 181, 912
BciT130I CCWGG 5 cut(s) 102, 270, 276, 395, 504
BclI TGATCA 1 cut(s) 1035
BcoDI GTCTC 3 cut(s) 349, 427, 531
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 6 cut(s) 67, 183, 186, 478, 481, 555
BlpI GCTNAGC 1 cut(s) 152
BlsI GCNGC 6 cut(s) 68, 184, 187, 479, 482, 556
Bme1390I CCNGG 5 cut(s) 102, 270, 276, 395, 504
Bme18I GGWCC 1 cut(s) 266
BmgBI CACGTC 1 cut(s) 622
BmgT120I GGNCC 3 cut(s) 266, 272, 848
BmiI GGNNCC 4 cut(s) 171, 267, 784, 814
BmrFI CCNGG 5 cut(s) 102, 270, 276, 395, 504
BmsI GCATC 3 cut(s) 864, 967, 1058
BpiI GAAGAC 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 100, 269, 275
BsaWI WCCGGW 1 cut(s) 882
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 1001
Bse1I ACTGG 1 cut(s) 650
Bse3DI GCAATG 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 882
BseBI CCWGG 5 cut(s) 102, 270, 276, 395, 504
BseDI CCNNGG 3 cut(s) 100, 269, 275
BseGI GGATG 3 cut(s) 173, 499, 923
BseLI CCNNNNNNNGG 2 cut(s) 275, 1001
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 650
BseSI GKGCMC 1 cut(s) 602
BseXI GCAGC 5 cut(s) 53, 169, 197, 467, 541
BsgI GTGCAG 1 cut(s) 884
BshFI GGCC 2 cut(s) 274, 850
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 883
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 275, 1001
BsmAI GTCTC 3 cut(s) 349, 427, 531
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 1061
BsnI GGCC 2 cut(s) 274, 850
Bsp1286I GDGCHC 2 cut(s) 158, 602
Bsp13I TCCGGA 1 cut(s) 882
Bsp143I GATC 6 cut(s) 22, 91, 169, 212, 936, 1035
Bsp1720I GCTNAGC 1 cut(s) 152
BspACI CCGC 1 cut(s) 477
BspANI GGCC 2 cut(s) 274, 850
BspCNI CTCAG 1 cut(s) 144
BspEI TCCGGA 1 cut(s) 882
BspHI TCATGA 1 cut(s) 1038
BspLI GGNNCC 4 cut(s) 171, 267, 784, 814
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 3 cut(s) 164, 177, 944
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 1 cut(s) 650
BssECI CCNNGG 3 cut(s) 100, 269, 275
BssMI GATC 6 cut(s) 22, 91, 169, 212, 936, 1035
Bst2UI CCWGG 5 cut(s) 102, 270, 276, 395, 504
Bst4CI ACNGT 6 cut(s) 235, 390, 451, 799, 1014, 1033
Bst6I CTCTTC 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 152, 1080
BstF5I GGATG 3 cut(s) 173, 499, 923
BstKTI GATC 6 cut(s) 25, 94, 172, 215, 939, 1038
BstMAI GTCTC 3 cut(s) 349, 427, 531
BstMBI GATC 6 cut(s) 22, 91, 169, 212, 936, 1035
BstMWI GCNNNNNNNGC 4 cut(s) 404, 597, 625, 847
BstNI CCWGG 5 cut(s) 102, 270, 276, 395, 504
BstNSI RCATGY 3 cut(s) 378, 471, 835
BstSCI CCNGG 5 cut(s) 100, 268, 274, 393, 502
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 602
BstV1I GCAGC 5 cut(s) 53, 169, 197, 467, 541
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 2 cut(s) 169, 936
BstYI RGATCY 2 cut(s) 169, 936
BsuRI GGCC 2 cut(s) 274, 850
BtrI CACGTC 1 cut(s) 622
BtsCI GGATG 3 cut(s) 173, 499, 923
CaiI CAGNNNCTG 2 cut(s) 394, 557
CciI TCATGA 1 cut(s) 1038
Cfr13I GGNCC 3 cut(s) 266, 272, 848
Csp6I GTAC 3 cut(s) 112, 280, 585
CviAII CATG 6 cut(s) 159, 363, 375, 468, 832, 1039
CviQI GTAC 3 cut(s) 112, 280, 585
DdeI CTNAG 2 cut(s) 152, 1080
DpnI GATC 6 cut(s) 24, 93, 171, 214, 938, 1037
DpnII GATC 6 cut(s) 22, 91, 169, 212, 936, 1035
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 525
EcoO109I RGGNCCY 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 565
EcoRII CCWGG 5 cut(s) 100, 268, 274, 393, 502
FaeI CATG 6 cut(s) 162, 366, 378, 471, 835, 1042
FaqI GGGAC 1 cut(s) 279
FatI CATG 6 cut(s) 158, 362, 374, 467, 831, 1038
FauNDI CATATG 2 cut(s) 594, 1069
FbaI TGATCA 1 cut(s) 1035
Fnu4HI GCNGC 6 cut(s) 67, 183, 186, 478, 481, 555
FokI GGATG 3 cut(s) 160, 486, 930
Fsp4HI GCNGC 6 cut(s) 67, 183, 186, 478, 481, 555
FspBI CTAG 1 cut(s) 588
GluI GCNGC 6 cut(s) 67, 183, 186, 478, 481, 555
HaeIII GGCC 2 cut(s) 274, 850
HapII CCGG 1 cut(s) 883
Hin1II CATG 6 cut(s) 162, 366, 378, 471, 835, 1042
HinfI GANTC 5 cut(s) 163, 342, 524, 772, 889
HpaII CCGG 1 cut(s) 883
HphI GGTGA 2 cut(s) 561, 962
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 5 cut(s) 246, 608, 697, 871, 1010
Hpy188III TCNNGA 4 cut(s) 167, 216, 883, 1039
Hpy8I GTNNAC 1 cut(s) 282
HpyAV CCTTC 4 cut(s) 445, 649, 910, 927
HpyCH4III ACNGT 6 cut(s) 235, 390, 451, 799, 1014, 1033
HpyCH4IV ACGT 2 cut(s) 380, 621
HpyCH4V TGCA 6 cut(s) 69, 185, 378, 841, 865, 1061
HpyF10VI GCNNNNNNNGC 4 cut(s) 404, 597, 625, 847
HpyF3I CTNAG 2 cut(s) 152, 1080
HpySE526I ACGT 2 cut(s) 380, 621
Hsp92II CATG 6 cut(s) 162, 366, 378, 471, 835, 1042
Kpn2I TCCGGA 1 cut(s) 882
Ksp22I TGATCA 1 cut(s) 1035
Kzo9I GATC 6 cut(s) 22, 91, 169, 212, 936, 1035
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 5 cut(s) 53, 169, 197, 467, 541
LweI GCATC 3 cut(s) 864, 967, 1058
MaeI CTAG 1 cut(s) 588
MaeII ACGT 2 cut(s) 380, 621
MaeIII GTNAC 2 cut(s) 370, 658
MalI GATC 6 cut(s) 24, 93, 171, 214, 938, 1037
MboI GATC 6 cut(s) 22, 91, 169, 212, 936, 1035
MboII GAAGA 3 cut(s) 351, 423, 898
MfeI CAATTG 1 cut(s) 130
MflI RGATCY 2 cut(s) 169, 936
MhlI GDGCHC 2 cut(s) 158, 602
MluCI AATT 9 cut(s) 41, 130, 317, 565, 631, 663, 688, 724, 744
MlyI GAGTC 3 cut(s) 351, 533, 766
MmeI TCCRAC 1 cut(s) 1033
MnlI CCTC 3 cut(s) 134, 678, 861
MroI TCCGGA 1 cut(s) 882
MseI TTAA 2 cut(s) 45, 306
MslI CAYNNNNRTG 2 cut(s) 472, 836
MspA1I CMGCKG 2 cut(s) 329, 554
MspI CCGG 1 cut(s) 883
MspR9I CCNGG 5 cut(s) 102, 270, 276, 395, 504
MunI CAATTG 1 cut(s) 130
Mva1269I GAATGC 1 cut(s) 1061
MvaI CCWGG 5 cut(s) 102, 270, 276, 395, 504
MwoI GCNNNNNNNGC 4 cut(s) 404, 597, 625, 847
NdeI CATATG 2 cut(s) 594, 1069
NdeII GATC 6 cut(s) 22, 91, 169, 212, 936, 1035
NlaIII CATG 6 cut(s) 162, 366, 378, 471, 835, 1042
NlaIV GGNNCC 4 cut(s) 171, 267, 784, 814
NmuCI GTSAC 2 cut(s) 370, 658
NspI RCATGY 3 cut(s) 378, 471, 835
PagI TCATGA 1 cut(s) 1038
PciI ACATGT 1 cut(s) 467
PctI GAATGC 1 cut(s) 1061
PfeI GAWTC 2 cut(s) 163, 889
PflMI CCANNNNNTGG 1 cut(s) 1001
PfoI TCCNGGA 1 cut(s) 502
PkrI GCNGC 6 cut(s) 68, 184, 187, 479, 482, 556
PleI GAGTC 3 cut(s) 350, 532, 766
PpsI GAGTC 3 cut(s) 350, 532, 766
Ppu21I YACGTR 1 cut(s) 381
PpuMI RGGWCCY 1 cut(s) 266
PscI ACATGT 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 5 cut(s) 100, 268, 274, 393, 502
PspGI CCWGG 5 cut(s) 100, 268, 274, 393, 502
PspN4I GGNNCC 4 cut(s) 171, 267, 784, 814
PspPI GGNCC 3 cut(s) 266, 272, 848
PspPPI RGGWCCY 1 cut(s) 266
PsrI GAACNNNNNNTAC 2 cut(s) 374, 406
PstI CTGCAG 1 cut(s) 187
PstNI CAGNNNCTG 2 cut(s) 394, 557
PsuI RGATCY 2 cut(s) 169, 936
PvuII CAGCTG 2 cut(s) 329, 554
RsaI GTAC 3 cut(s) 113, 281, 586
RsaNI GTAC 3 cut(s) 112, 280, 585
RseI CAYNNNNRTG 2 cut(s) 472, 836
SaqAI TTAA 2 cut(s) 45, 306
SatI GCNGC 6 cut(s) 67, 183, 186, 478, 481, 555
Sau3AI GATC 6 cut(s) 22, 91, 169, 212, 936, 1035
Sau96I GGNCC 3 cut(s) 266, 272, 848
SchI GAGTC 3 cut(s) 351, 533, 766
ScrFI CCNGG 5 cut(s) 102, 270, 276, 395, 504
SduI GDGCHC 2 cut(s) 158, 602
SfaNI GCATC 3 cut(s) 864, 967, 1058
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 2 cut(s) 472, 836
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 9 cut(s) 41, 130, 317, 565, 631, 663, 688, 724, 744
SsiI CCGC 1 cut(s) 477
SspMI CTAG 1 cut(s) 588
StyD4I CCNGG 5 cut(s) 100, 268, 274, 393, 502
TaaI ACNGT 6 cut(s) 235, 390, 451, 799, 1014, 1033
TaiI ACGT 2 cut(s) 383, 624
TaqI TCGA 1 cut(s) 211
TasI AATT 9 cut(s) 41, 130, 317, 565, 631, 663, 688, 724, 744
TatI WGTACW 1 cut(s) 584
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 2 cut(s) 163, 889
Tru1I TTAA 2 cut(s) 45, 306
Tru9I TTAA 2 cut(s) 45, 306
TseFI GTSAC 2 cut(s) 370, 658
TseI GCWGC 5 cut(s) 66, 182, 185, 480, 554
Tsp45I GTSAC 2 cut(s) 370, 658
TspDTI ATGAA 1 cut(s) 602
TspGWI ACGGA 2 cut(s) 99, 519
Van91I CCANNNNNTGG 1 cut(s) 1001
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 5 cut(s) 41, 317, 565, 724, 744
XceI RCATGY 3 cut(s) 378, 471, 835
XspI CTAG 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.