MD17G1064200.v1.1

COBRA-like protein 1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
5206559 .. 5209674
3116 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1064200.v1.1.491

Sequence Viewer

Length: 1374 bp
ATGGGGTTTCTGTTCCTGCCCATGATTCGATCAGTCCCACAATTCATCAGTTTCGCCACCTTTCTTGTCTTTGTGCTTTCTTGCACCACCAGCTTCATTGCAACAGAAGCGTATGATCCACTCGACCCGAACGGAAATATCACCATCAAATGGGATATCTTAAGCTGGACTCCTGATGGCTATGTTGCTGCTGTTACACTTTTTAACTTCCAAAAGTATCGGCACATTCAGGCACCGGGATGGTCGCTAGGGTGGACATGGGCAAAGAAGGAGGTTATATGGAACATGGTGGGAGGACAAGCCACAGAGCAAGGGGATTGTTCAAGATTCAAAACAACACTCCCCCATTGCTGTAAGAAGACTCCTACAGTTGTTGATCTATTGCCCGGAACACCTTACAATCAACAATACACAAATTGTTGCAAAGGAGGGGTACTTAGTTCATGGGTGCAAGATCCAGAAAAGGCTGTAGGTTCTTTTCAAATAAGCGTTGGTCAAGCAGGAACCACAAACAAGACCGTCAGACTGCCTAAAAACTTCACCCTGAACACACCCGGTCCTGGGTATACTTGTGCTCGCGCCAAAGTAGTCAAACCAACTAAATTTATCAGTCCGGATAAAAGGAGAGTCACTCAAGCTATGATGACATGGAATGTGACGTGCACATATTCGCAAATACTGGCTCAGAAAACTCCTACATGTTGTGTCTCGCTCTCATCGTTCTACAACGACACTATAGTGCCCTGCCCAAATTGCTCATGCGGTTGCCAGAGAAACGCAACTCATCCAGGAAGCTGTGTAGAACCAGATTCCCCCTACTTGGCTTCAGTTGTCTCAGCCTCCAACAAGAATAGCTACACGCCTCTAGTTAGATGCACTGCGCACATGTGCCCAATCCGAGTTCACTGGCATGTCAAGGTAAACTACAAACAATACTGGCGAGTGAAGGTTACAGTTACAAACTTCAATTACAGGATGAATTATTCCGATTGGAACATGGTTGTCCAACACCCAAACTTTGACAATCTGACCCAGATTTTCAGCTACAACTACAAGTCGATAACTCCTTATGCGACAATAAATGATACTGGCATGTTATGGGGAATTAAGTTCTACAATGATATTCTGATGCAAGCTGGGCCCCTTGGTAATGTACAGTCAGAGCTGCTTTTCCAAAAGGATGAAGCAACTTTCACATTTGATAAGGGTTGGGCGTTCCCTCGAAGGGTCTATTTCAACGGTGATAACTGTGTGATGCCACCTCCAGATGCCTATCCATGGTTGCCAAATTCTGGTTTCCGGCAGTATGTTTCTCTGCTCACTCTAATCATGACTTGTCTATCGACCATTGCAGTCATGTATGCTTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

51.58

Weight (kDa)

8.96

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 61 - 224 1.1e-67 COBRA-like protein
COB_C PF25079 233 - 426 1.8e-61 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 882
AccB1I GGYRCC 1 cut(s) 232
AccB7I CCANNNNNTGG 2 cut(s) 150, 1292
AccI GTMKAC 1 cut(s) 566
AccII CGCG 1 cut(s) 579
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 1 cut(s) 762
AclWI GGATC 2 cut(s) 110, 449
AcsI RAATTY 2 cut(s) 602, 1288
AcuI CTGAAG 1 cut(s) 810
AfaI GTAC 2 cut(s) 435, 1155
AfiI CCNNNNNNNGG 7 cut(s) 150, 560, 561, 820, 1225, 1278, 1292
AflII CTTAAG 1 cut(s) 160
AflIII ACRYGT 2 cut(s) 698, 885
AgsI TTSAA 5 cut(s) 324, 331, 482, 967, 1237
AjiI CACGTC 1 cut(s) 660
AjnI CCWGG 2 cut(s) 559, 787
AleI CACNNNNGTG 1 cut(s) 737
AluBI AGCT 8 cut(s) 93, 165, 638, 795, 855, 1044, 1136, 1165
AluI AGCT 8 cut(s) 93, 165, 638, 795, 855, 1044, 1136, 1165
Alw21I GWGCWC 2 cut(s) 577, 665
Alw26I GTCTC 2 cut(s) 712, 838
Alw44I GTGCAC 1 cut(s) 661
AlwI GGATC 2 cut(s) 110, 449
Aor13HI TCCGGA 1 cut(s) 613
AoxI GGCC 1 cut(s) 1139
ApaI GGGCCC 1 cut(s) 1143
ApaLI GTGCAC 1 cut(s) 661
ApeKI GCWGC 2 cut(s) 188, 1165
ApoI RAATTY 2 cut(s) 602, 1288
AspLEI GCGC 2 cut(s) 581, 883
AspS9I GGNCC 3 cut(s) 557, 1139, 1140
AsuC2I CCSGG 3 cut(s) 237, 387, 555
AsuHPI GGTGA 3 cut(s) 133, 532, 1253
AvaII GGWCC 1 cut(s) 557
BaeGI GKGCMC 4 cut(s) 665, 744, 893, 1143
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 1143
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 2 cut(s) 577, 665
BbvI GCAGC 2 cut(s) 175, 1152
BccI CCATC 3 cut(s) 152, 170, 234
BciT130I CCWGG 2 cut(s) 561, 789
BcnI CCSGG 3 cut(s) 237, 387, 555
BcoDI GTCTC 2 cut(s) 712, 838
BfaI CTAG 2 cut(s) 248, 866
BfmI CTRYAG 3 cut(s) 366, 468, 735
BfrI CTTAAG 1 cut(s) 160
BisI GCNGC 2 cut(s) 189, 1166
BlsI GCNGC 2 cut(s) 190, 1167
Bme1390I CCNGG 5 cut(s) 237, 387, 555, 561, 789
Bme18I GGWCC 1 cut(s) 557
BmgBI CACGTC 1 cut(s) 660
BmgT120I GGNCC 3 cut(s) 557, 1139, 1140
BmiI GGNNCC 4 cut(s) 234, 505, 1141, 1142
BmrFI CCNGG 5 cut(s) 237, 387, 555, 561, 789
BmsI GCATC 4 cut(s) 863, 1119, 1245, 1258
BpiI GAAGAC 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 616, 648
BpmI CTGGAG 1 cut(s) 1248
BpuEI CTTGAG 1 cut(s) 618
BpuMI CCSGG 3 cut(s) 237, 387, 555
BsaBI GATNNNNATC 1 cut(s) 1272
BsaJI CCNNGG 3 cut(s) 560, 1144, 1277
BsaWI WCCGGW 1 cut(s) 613
Bsc4I CCNNNNNNNGG 7 cut(s) 150, 560, 561, 820, 1225, 1278, 1292
Bse1I ACTGG 4 cut(s) 684, 911, 941, 1093
Bse3DI GCAATG 3 cut(s) 96, 346, 1347
Bse8I GATNNNNATC 1 cut(s) 1272
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 2 cut(s) 561, 789
BseDI CCNNGG 3 cut(s) 560, 1144, 1277
BseGI GGATG 4 cut(s) 245, 784, 981, 1186
BseJI GATNNNNATC 1 cut(s) 1272
BseLI CCNNNNNNNGG 7 cut(s) 150, 560, 561, 820, 1225, 1278, 1292
BseMI GCAATG 3 cut(s) 96, 346, 1347
BseMII CTCAG 2 cut(s) 698, 849
BseNI ACTGG 4 cut(s) 684, 911, 941, 1093
BseSI GKGCMC 4 cut(s) 665, 744, 893, 1143
BseXI GCAGC 2 cut(s) 175, 1152
BseYI CCCAGC 1 cut(s) 1136
Bsh1236I CGCG 1 cut(s) 579
BshFI GGCC 1 cut(s) 1141
BshNI GGYRCC 1 cut(s) 232
BsiHKAI GWGCWC 2 cut(s) 577, 665
BsiSI CCGG 5 cut(s) 236, 387, 555, 614, 1300
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 7 cut(s) 150, 560, 561, 820, 1225, 1278, 1292
BsmAI GTCTC 2 cut(s) 712, 838
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 1141
Bsp120I GGGCCC 1 cut(s) 1139
Bsp1286I GDGCHC 5 cut(s) 577, 665, 744, 893, 1143
Bsp13I TCCGGA 1 cut(s) 613
Bsp1407I TGTACA 1 cut(s) 1153
Bsp143I GATC 4 cut(s) 29, 115, 376, 454
Bsp19I CCATGG 1 cut(s) 1277
BspACI CCGC 1 cut(s) 762
BspANI GGCC 1 cut(s) 1141
BspCNI CTCAG 2 cut(s) 697, 848
BspEI TCCGGA 1 cut(s) 613
BspFNI CGCG 1 cut(s) 579
BspHI TCATGA 1 cut(s) 1329
BspLI GGNNCC 4 cut(s) 234, 505, 1141, 1142
BspPI GGATC 2 cut(s) 110, 449
BspT107I GGYRCC 1 cut(s) 232
BspTI CTTAAG 1 cut(s) 160
BsrDI GCAATG 3 cut(s) 96, 346, 1347
BsrGI TGTACA 1 cut(s) 1153
BsrI ACTGG 4 cut(s) 684, 911, 941, 1093
BssECI CCNNGG 3 cut(s) 560, 1144, 1277
BssMI GATC 4 cut(s) 29, 115, 376, 454
BssNAI GTATAC 1 cut(s) 567
BssT1I CCWWGG 2 cut(s) 1144, 1277
Bst1107I GTATAC 1 cut(s) 567
Bst2UI CCWGG 2 cut(s) 561, 789
Bst4CI ACNGT 6 cut(s) 370, 520, 955, 1158, 1241, 1250
BstAFI CTTAAG 1 cut(s) 160
BstAUI TGTACA 1 cut(s) 1153
BstC8I GCNNGC 2 cut(s) 577, 1134
BstDEI CTNAG 3 cut(s) 437, 684, 835
BstDSI CCRYGG 1 cut(s) 1277
BstF5I GGATG 4 cut(s) 245, 784, 981, 1186
BstFNI CGCG 1 cut(s) 579
BstHHI GCGC 2 cut(s) 581, 883
BstKTI GATC 4 cut(s) 32, 118, 379, 457
BstMAI GTCTC 2 cut(s) 712, 838
BstMBI GATC 4 cut(s) 29, 115, 376, 454
BstMWI GCNNNNNNNGC 4 cut(s) 90, 107, 753, 1138
BstNI CCWGG 2 cut(s) 561, 789
BstNSI RCATGY 4 cut(s) 702, 889, 914, 1096
BstSCI CCNGG 5 cut(s) 235, 385, 553, 559, 787
BstSFI CTRYAG 3 cut(s) 366, 468, 735
BstSLI GKGCMC 4 cut(s) 665, 744, 893, 1143
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 2 cut(s) 175, 1152
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BstZ17I GTATAC 1 cut(s) 567
BsuRI GGCC 1 cut(s) 1141
BtgI CCRYGG 1 cut(s) 1277
BtrI CACGTC 1 cut(s) 660
BtsCI GGATG 4 cut(s) 245, 784, 981, 1186
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 2 cut(s) 876, 904
Cac8I GCNNGC 2 cut(s) 577, 1134
CciI TCATGA 1 cut(s) 1329
CfoI GCGC 2 cut(s) 581, 883
Cfr13I GGNCC 3 cut(s) 557, 1139, 1140
Csp6I GTAC 2 cut(s) 434, 1154
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviQI GTAC 2 cut(s) 434, 1154
DdeI CTNAG 3 cut(s) 437, 684, 835
DpnI GATC 4 cut(s) 31, 117, 378, 456
DpnII GATC 4 cut(s) 29, 115, 376, 454
Eco130I CCWWGG 2 cut(s) 1144, 1277
Eco24I GRGCYC 1 cut(s) 1143
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 557
Eco57I CTGAAG 1 cut(s) 810
EcoO109I RGGNCCY 1 cut(s) 1140
EcoRII CCWGG 2 cut(s) 559, 787
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 2 cut(s) 1144, 1277
EcoT38I GRGCYC 1 cut(s) 1143
ErhI CCWWGG 2 cut(s) 1144, 1277
FaqI GGGAC 1 cut(s) 20
FblI GTMKAC 1 cut(s) 566
Fnu4HI GCNGC 2 cut(s) 189, 1166
FokI GGATG 4 cut(s) 252, 771, 988, 1193
FriOI GRGCYC 1 cut(s) 1143
Fsp4HI GCNGC 2 cut(s) 189, 1166
FspBI CTAG 2 cut(s) 248, 866
FspI TGCGCA 1 cut(s) 882
GlaI GCGC 2 cut(s) 580, 882
GluI GCNGC 2 cut(s) 189, 1166
GsaI CCCAGC 1 cut(s) 1140
GsuI CTGGAG 1 cut(s) 1248
HaeIII GGCC 1 cut(s) 1141
HapII CCGG 5 cut(s) 236, 387, 555, 614, 1300
HhaI GCGC 2 cut(s) 581, 883
Hin6I GCGC 2 cut(s) 579, 881
HinP1I GCGC 2 cut(s) 579, 881
HinfI GANTC 6 cut(s) 25, 169, 327, 361, 627, 809
HpaII CCGG 5 cut(s) 236, 387, 555, 614, 1300
HphI GGTGA 3 cut(s) 133, 532, 1253
Hpy166II GTNNAC 5 cut(s) 255, 567, 663, 904, 922
Hpy188I TCNGA 7 cut(s) 524, 687, 899, 988, 1029, 1128, 1162
Hpy188III TCNNGA 6 cut(s) 173, 324, 458, 614, 1265, 1330
Hpy8I GTNNAC 5 cut(s) 255, 567, 663, 904, 922
HpyAV CCTTC 3 cut(s) 262, 940, 1218
HpyCH4III ACNGT 6 cut(s) 370, 520, 955, 1158, 1241, 1250
HpyCH4IV ACGT 1 cut(s) 659
HpyCH4V TGCA 8 cut(s) 84, 101, 423, 451, 663, 876, 1132, 1352
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 107, 753, 1138
HpyF3I CTNAG 3 cut(s) 437, 684, 835
HpySE526I ACGT 1 cut(s) 659
HspAI GCGC 2 cut(s) 579, 881
Kpn2I TCCGGA 1 cut(s) 613
Kzo9I GATC 4 cut(s) 29, 115, 376, 454
Lsp1109I GCAGC 2 cut(s) 175, 1152
LweI GCATC 4 cut(s) 863, 1119, 1245, 1258
MaeI CTAG 2 cut(s) 248, 866
MaeII ACGT 1 cut(s) 659
MaeIII GTNAC 5 cut(s) 193, 628, 655, 949, 955
MalI GATC 4 cut(s) 31, 117, 378, 456
MboI GATC 4 cut(s) 29, 115, 376, 454
MboII GAAGA 1 cut(s) 370
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 5 cut(s) 577, 665, 744, 893, 1143
MluCI AATT 8 cut(s) 41, 415, 602, 751, 967, 979, 1104, 1288
MlyI GAGTC 3 cut(s) 163, 355, 636
MmeI TCCRAC 2 cut(s) 867, 1030
MnlI CCTC 7 cut(s) 265, 287, 422, 850, 873, 1230, 1272
MroI TCCGGA 1 cut(s) 613
MseI TTAA 4 cut(s) 161, 204, 1107, 1372
MslI CAYNNNNRTG 3 cut(s) 238, 737, 909
MspCI CTTAAG 1 cut(s) 160
MspI CCGG 5 cut(s) 236, 387, 555, 614, 1300
MspR9I CCNGG 5 cut(s) 237, 387, 555, 561, 789
MvaI CCWGG 2 cut(s) 561, 789
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 4 cut(s) 90, 107, 753, 1138
NciI CCSGG 3 cut(s) 237, 387, 555
NcoI CCATGG 1 cut(s) 1277
NdeII GATC 4 cut(s) 29, 115, 376, 454
NlaIV GGNNCC 4 cut(s) 234, 505, 1141, 1142
NmuCI GTSAC 2 cut(s) 628, 655
NsbI TGCGCA 1 cut(s) 882
NspI RCATGY 4 cut(s) 702, 889, 914, 1096
OliI CACNNNNGTG 1 cut(s) 737
PagI TCATGA 1 cut(s) 1329
PciI ACATGT 2 cut(s) 698, 885
PcsI WCGNNNNNNNCGW 1 cut(s) 716
PfeI GAWTC 3 cut(s) 25, 327, 809
PflMI CCANNNNNTGG 2 cut(s) 150, 1292
PfoI TCCNGGA 1 cut(s) 787
PkrI GCNGC 2 cut(s) 190, 1167
PleI GAGTC 3 cut(s) 163, 355, 635
PpsI GAGTC 3 cut(s) 163, 355, 635
PscI ACATGT 2 cut(s) 698, 885
Psp6I CCWGG 2 cut(s) 559, 787
PspFI CCCAGC 1 cut(s) 1136
PspGI CCWGG 2 cut(s) 559, 787
PspN4I GGNNCC 4 cut(s) 234, 505, 1141, 1142
PspOMI GGGCCC 1 cut(s) 1139
PspPI GGNCC 3 cut(s) 557, 1139, 1140
PsuI RGATCY 1 cut(s) 454
RsaI GTAC 2 cut(s) 435, 1155
RsaNI GTAC 2 cut(s) 434, 1154
RseI CAYNNNNRTG 3 cut(s) 238, 737, 909
SaqAI TTAA 4 cut(s) 161, 204, 1107, 1372
SatI GCNGC 2 cut(s) 189, 1166
Sau3AI GATC 4 cut(s) 29, 115, 376, 454
Sau96I GGNCC 3 cut(s) 557, 1139, 1140
SchI GAGTC 3 cut(s) 163, 355, 636
ScrFI CCNGG 5 cut(s) 237, 387, 555, 561, 789
SduI GDGCHC 5 cut(s) 577, 665, 744, 893, 1143
SfaNI GCATC 4 cut(s) 863, 1119, 1245, 1258
SfcI CTRYAG 3 cut(s) 366, 468, 735
SinI GGWCC 1 cut(s) 557
SmiMI CAYNNNNRTG 3 cut(s) 238, 737, 909
SmlI CTYRAG 2 cut(s) 160, 633
SmoI CTYRAG 2 cut(s) 160, 633
Sse9I AATT 8 cut(s) 41, 415, 602, 751, 967, 979, 1104, 1288
SsiI CCGC 1 cut(s) 762
SspMI CTAG 2 cut(s) 248, 866
StyD4I CCNGG 5 cut(s) 235, 385, 553, 559, 787
StyI CCWWGG 2 cut(s) 1144, 1277
TaaI ACNGT 6 cut(s) 370, 520, 955, 1158, 1241, 1250
TaiI ACGT 1 cut(s) 662
TaqI TCGA 5 cut(s) 28, 123, 1058, 1222, 1343
TasI AATT 8 cut(s) 41, 415, 602, 751, 967, 979, 1104, 1288
TatI WGTACW 1 cut(s) 1153
TfiI GAWTC 3 cut(s) 25, 327, 809
Tru1I TTAA 4 cut(s) 161, 204, 1107, 1372
Tru9I TTAA 4 cut(s) 161, 204, 1107, 1372
TscAI CASTG 2 cut(s) 883, 911
TseFI GTSAC 2 cut(s) 628, 655
TseI GCWGC 2 cut(s) 188, 1165
Tsp45I GTSAC 2 cut(s) 628, 655
TspDTI ATGAA 5 cut(s) 34, 85, 432, 992, 1197
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 2 cut(s) 883, 911
Van91I CCANNNNNTGG 2 cut(s) 150, 1292
Vha464I CTTAAG 1 cut(s) 160
VneI GTGCAC 1 cut(s) 661
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 2 cut(s) 602, 1288
XceI RCATGY 4 cut(s) 702, 889, 914, 1096
XmiI GTMKAC 1 cut(s) 566
XspI CTAG 2 cut(s) 248, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.