Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004894

Physical Location & Seq

Genomic Coordinates Reverse (-)

35475230 .. 35478660

Gene Structure 3431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGGGTTTCTGCTGTCCAAGTTAACCAGCTTTGCCACTGTGCTTGTATTTTGGCTTTGTTGCTTCACCTTCACCTCAACAGATGCATATGACCCTCTTGATCCCAGTGGCAACATTACGATTAAGTGGGATATTAAAAGCTGGACCCCTGATGGCTATCTTGCCATGGTTACCATTTATAATTACCAGCAGTATAGACACATTCAAGCACCAGGCTGGTCACTAGGATGGGCATGGAAAAATAAGGAGGTGATTTGGGACATGGTGGGAGGACAAGCTACCGAACAAGGGGACTGTTCACGATTTAAGACATTTCCCCCGCATTGCTGTAAAAAGAAACCAACCATTGTTGATCTACTCCCTGGAACTCCGTACAATAAGCAAGTCTCCAATTGCTGCAAAGGTGGAGTGCTGAGTTCATGGATGCAGGATCCATTCAATGCTGCAGCTTCTTTTCAACTTAGTGTTGGTCAAGCGGGAACCACTAATAAAAAAGTTAAGCCTCCAGAAAACTTCACTCTGATGGCACCTGGACCGGGCTACACTTGTGGCGCTTTAAAAGTTGTCAAACCAACTAAATACTTTTCTCCAGATAAAAGGCGAGTCACTCAAGCCATGATGACATGGAAGTTGACATGCACATATTCACAATTTCTGGCTCAGAAAACTCCTGCTTGCTGTGTCTCACTGTCTTCGTTCTACAATGACACAGTAGTTCCCTGCCCAACATGTTCATGCGGCTGTCAAAACAACCTAACTCATCCAGGAAGCTGTGTAGATCCAAAGTCTCCGTATTTGGCTTCAGTTGTTTCAGCTGCTGACAAAAATTCGCCTTTGGTTCGATGTACTCACCATATGTGCCCGATCAGAGTTCATTGGCATATCAAGCTGAATTACAGAGAATACTGGCGAGTGAAGGTTACCATTACAAACTTTGATTACAGGAGAAATTACTCGGACTGGAATTTGGTTATGCAGCATCCAAATTTTGACAATCTGACCCAAGTTTTCAGCTTCAACTCAAAGTCCTTGACCCCTTACGGAACCTTCAATGATACTGCAATGCTGTGGGGAATCAAGTTCTACAACGATATGCTGATGCAATCCGGTCCTGTCGGTAATGTGCAGTCAGAGCTGCTTTTCCACAAGAATCCAGCAACTTTCACTTTCGAGAAGGGCTGGGCTTTCCCGAGAAGAATCTCTTTTAACGGTGATACTTGTGTAATGCCACCTCCAGATGCCTATCCATATTTGCCAAATGCTGGTTCTTGTCAGTATATCTCTCTGCTTACACTGATCATGGTGTGTGCATTGACCTTTGCATTTGCATATGCTTATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

448

Amino Acids

50.42

Weight (kDa)

8.9

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	53 - 216	1.4e-67	COBRA-like protein
COB_C	PF25079	226 - 416	2.2e-57	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02210 AT3G29810
fragaria_vesca	FvH4_6g46460 FvH4_6g46530
malus_domestica	MD09G1072800.v1.1 MD17G1064200.v1.1
prunus_persica	Prupe.3G250400_v2.0.a1 Prupe.3G250400_v2.0.a1
pyrus_communis	pycom12433g00030 pycom17g06430
rosa_chinensis	RchiOBHm_Chr2g0153051 RchiOBHm_Chr2g0165011 RchiOBHm_Chr2g0165171 RchiOBHm_Chr5g0001191
rosa_multiflora	Rmu_sc0001097.1_g000020 Rmu_sc0001097.1_g000043
rosa_roxburghii	Rroxscaffold_2G00085970 Rroxscaffold_2G00086120
rosa_rugosa	Rorug02G0512200 Rorug02G0512300 Rorug02G0512900
rosa_samantha	Rh2AG580300 Rh2AG581100 Rh2BG591600 Rh2BG592400 Rh2CG562100 Rh2CG563100 Rh2DG601700 Rh2DG602400
rosa_wichuraiana	Rw2G048170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	526
AccB7I	CCANNNNNTGG	1 cut(s)	1262
AciI	CCGC	3 cut(s)	320, 476, 738
AclWI	GGATC	4 cut(s)	95, 425, 438, 773
AcsI	RAATTY	3 cut(s)	826, 964, 985
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	2 cut(s)	374, 847
AfiI	CCNNNNNNNGG	3 cut(s)	288, 536, 1262
AflIII	ACRYGT	1 cut(s)	728
AgsI	TTSAA	5 cut(s)	206, 439, 458, 1018, 1051
AjnI	CCWGG	4 cut(s)	211, 361, 529, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	1249, 1281
AluBI	AGCT	9 cut(s)	30, 141, 278, 449, 771, 815, 889, 1014, 1135
AluI	AGCT	9 cut(s)	30, 141, 278, 449, 771, 815, 889, 1014, 1135
Alw26I	GTCTC	3 cut(s)	391, 688, 792
AlwI	GGATC	4 cut(s)	95, 425, 438, 773
AlwNI	CAGNNNCTG	1 cut(s)	818
Ama87I	CYCGRG	1 cut(s)	1189
ApeKI	GCWGC	6 cut(s)	396, 443, 446, 815, 976, 1135
ApoI	RAATTY	3 cut(s)	826, 964, 985
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	3 cut(s)	144, 533, 1109
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	5 cut(s)	58, 64, 262, 842, 1223
AvaI	CYCGRG	1 cut(s)	1189
AvaII	GGWCC	3 cut(s)	144, 533, 1109
BaeGI	GKGCMC	1 cut(s)	863
BaeI	ACNNNNGTAYC	2 cut(s)	1206, 1239
BamHI	GGATCC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	526
BbsI	GAAGAC	1 cut(s)	684
BbvI	GCAGC	6 cut(s)	383, 430, 458, 802, 988, 1122
BccI	CCATC	3 cut(s)	146, 222, 517
BciT130I	CCWGG	4 cut(s)	213, 363, 531, 765
BclI	TGATCA	1 cut(s)	1296
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	3 cut(s)	391, 688, 792
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	555
BisI	GCNGC	7 cut(s)	397, 444, 447, 739, 816, 977, 1136
BlsI	GCNGC	7 cut(s)	398, 445, 448, 740, 817, 978, 1137
Bme1390I	CCNGG	5 cut(s)	213, 363, 531, 537, 765
Bme18I	GGWCC	3 cut(s)	144, 533, 1109
BmeT110I	CYCGRG	1 cut(s)	1189
BmgT120I	GGNCC	3 cut(s)	144, 533, 1109
BmiI	GGNNCC	5 cut(s)	146, 432, 481, 528, 1045
BmrFI	CCNGG	5 cut(s)	213, 363, 531, 537, 765
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	5 cut(s)	73, 414, 988, 1089, 1228
BmuI	ACTGGG	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	3 cut(s)	489, 573, 1218
BpuEI	CTTGAG	1 cut(s)	594
BpuMI	CCSGG	1 cut(s)	537
BsaBI	GATNNNNATC	2 cut(s)	156, 1242
BsaJI	CCNNGG	2 cut(s)	165, 361
BsaWI	WCCGGW	1 cut(s)	1106
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 536, 1262
Bse1I	ACTGG	3 cut(s)	105, 911, 965
Bse3DI	GCAATG	2 cut(s)	322, 1068
Bse8I	GATNNNNATC	2 cut(s)	156, 1242
BseBI	CCWGG	4 cut(s)	213, 363, 531, 765
BseDI	CCNNGG	2 cut(s)	165, 361
BseGI	GGATG	4 cut(s)	233, 429, 760, 979
BseJI	GATNNNNATC	2 cut(s)	156, 1242
BseLI	CCNNNNNNNGG	3 cut(s)	288, 536, 1262
BseMI	GCAATG	2 cut(s)	322, 1068
BseMII	CTCAG	2 cut(s)	404, 674
BseNI	ACTGG	3 cut(s)	105, 911, 965
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	6 cut(s)	383, 430, 458, 802, 988, 1122
BseYI	CCCAGC	1 cut(s)	1179
BsgI	GTGCAG	1 cut(s)	1145
BshNI	GGYRCC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	1189
BsiSI	CCGG	2 cut(s)	536, 1107
BslFI	GGGAC	2 cut(s)	272, 305
BslI	CCNNNNNNNGG	3 cut(s)	288, 536, 1262
BsmAI	GTCTC	3 cut(s)	391, 688, 792
BsmFI	GGGAC	2 cut(s)	272, 305
BsoBI	CYCGRG	1 cut(s)	1189
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp143I	GATC	6 cut(s)	100, 352, 430, 778, 864, 1296
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	3 cut(s)	320, 476, 738
BspCNI	CTCAG	2 cut(s)	405, 673
BspLI	GGNNCC	5 cut(s)	146, 432, 481, 528, 1045
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	4 cut(s)	95, 425, 438, 773
BspT107I	GGYRCC	1 cut(s)	526
BsrDI	GCAATG	2 cut(s)	322, 1068
BsrI	ACTGG	3 cut(s)	105, 911, 965
BssECI	CCNNGG	2 cut(s)	165, 361
BssMI	GATC	6 cut(s)	100, 352, 430, 778, 864, 1296
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	4 cut(s)	213, 363, 531, 765
Bst4CI	ACNGT	5 cut(s)	40, 296, 690, 712, 1211
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	3 cut(s)	413, 461, 660
BstDSI	CCRYGG	1 cut(s)	165
BstEII	GGTNACC	2 cut(s)	169, 919
BstF5I	GGATG	4 cut(s)	233, 429, 760, 979
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	6 cut(s)	103, 355, 433, 781, 867, 1299
BstMAI	GTCTC	3 cut(s)	391, 688, 792
BstMBI	GATC	6 cut(s)	100, 352, 430, 778, 864, 1296
BstMWI	GCNNNNNNNGC	2 cut(s)	886, 1132
BstNI	CCWGG	4 cut(s)	213, 363, 531, 765
BstNSI	RCATGY	2 cut(s)	639, 732
BstPI	GGTNACC	2 cut(s)	169, 919
BstSCI	CCNGG	5 cut(s)	211, 361, 529, 535, 763
BstSFI	CTRYAG	1 cut(s)	444
BstSLI	GKGCMC	1 cut(s)	863
BstV1I	GCAGC	6 cut(s)	383, 430, 458, 802, 988, 1122
BstV2I	GAAGAC	1 cut(s)	684
BstX2I	RGATCY	2 cut(s)	430, 778
BstYI	RGATCY	2 cut(s)	430, 778
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	4 cut(s)	233, 429, 760, 979
BtsIMutI	CAGTG	4 cut(s)	36, 112, 686, 1292
Cac8I	GCNNGC	1 cut(s)	676
CaiI	CAGNNNCTG	1 cut(s)	818
CfoI	GCGC	1 cut(s)	554
Cfr13I	GGNCC	3 cut(s)	144, 533, 1109
Csp6I	GTAC	2 cut(s)	373, 846
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviQI	GTAC	2 cut(s)	373, 846
DdeI	CTNAG	3 cut(s)	413, 461, 660
DpnI	GATC	6 cut(s)	102, 354, 432, 780, 866, 1298
DpnII	GATC	6 cut(s)	100, 352, 430, 778, 864, 1296
DraI	TTTAAA	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	144, 533, 1109
Eco57I	CTGAAG	1 cut(s)	786
Eco88I	CYCGRG	1 cut(s)	1189
Eco91I	GGTNACC	2 cut(s)	169, 919
EcoO65I	GGTNACC	2 cut(s)	169, 919
EcoRII	CCWGG	4 cut(s)	211, 361, 529, 763
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	165
FalI	AAGNNNNNCTT	2 cut(s)	1186, 1218
FaqI	GGGAC	2 cut(s)	272, 305
FauI	CCCGC	2 cut(s)	327, 469
FauNDI	CATATG	3 cut(s)	88, 855, 1330
FbaI	TGATCA	1 cut(s)	1296
Fnu4HI	GCNGC	7 cut(s)	397, 444, 447, 739, 816, 977, 1136
FokI	GGATG	4 cut(s)	240, 436, 747, 966
Fsp4HI	GCNGC	7 cut(s)	397, 444, 447, 739, 816, 977, 1136
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	7 cut(s)	397, 444, 447, 739, 816, 977, 1136
GsaI	CCCAGC	1 cut(s)	1183
GsuI	CTGGAG	3 cut(s)	489, 573, 1218
HaeII	RGCGCY	1 cut(s)	555
HapII	CCGG	2 cut(s)	536, 1107
HhaI	GCGC	1 cut(s)	554
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HincII	GTYRAC	2 cut(s)	24, 633
HindII	GTYRAC	2 cut(s)	24, 633
HinfI	GANTC	4 cut(s)	603, 1074, 1150, 1197
HpaI	GTTAAC	1 cut(s)	24
HpaII	CCGG	2 cut(s)	536, 1107
HphI	GGTGA	5 cut(s)	58, 64, 262, 842, 1223
Hpy166II	GTNNAC	3 cut(s)	24, 299, 633
Hpy188I	TCNGA	6 cut(s)	522, 663, 869, 958, 999, 1132
Hpy188III	TCNNGA	7 cut(s)	98, 300, 506, 590, 1171, 1189, 1235
Hpy8I	GTNNAC	3 cut(s)	24, 299, 633
HpyAV	CCTTC	4 cut(s)	79, 910, 1057, 1168
HpyCH4III	ACNGT	5 cut(s)	40, 296, 690, 712, 1211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	886, 1132
HpyF3I	CTNAG	3 cut(s)	413, 461, 660
HspAI	GCGC	1 cut(s)	552
Ksp22I	TGATCA	1 cut(s)	1296
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	6 cut(s)	100, 352, 430, 778, 864, 1296
Lsp1109I	GCAGC	6 cut(s)	383, 430, 458, 802, 988, 1122
LweI	GCATC	5 cut(s)	73, 414, 988, 1089, 1228
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	4 cut(s)	169, 219, 604, 919
MalI	GATC	6 cut(s)	102, 354, 432, 780, 866, 1298
MboI	GATC	6 cut(s)	100, 352, 430, 778, 864, 1296
MboII	GAAGA	2 cut(s)	684, 1206
MfeI	CAATTG	1 cut(s)	391
MflI	RGATCY	2 cut(s)	430, 778
MhlI	GDGCHC	1 cut(s)	863
MluCI	AATT	8 cut(s)	181, 391, 650, 826, 892, 949, 964, 985
MlyI	GAGTC	1 cut(s)	612
MnlI	CCTC	6 cut(s)	85, 105, 241, 263, 513, 1242
Mph1103I	ATGCAT	1 cut(s)	88
MseI	TTAA	8 cut(s)	23, 123, 135, 306, 498, 557, 1206, 1342
MslI	CAYNNNNRTG	3 cut(s)	226, 521, 733
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	2 cut(s)	536, 1107
MspR9I	CCNGG	5 cut(s)	213, 363, 531, 537, 765
MunI	CAATTG	1 cut(s)	391
MvaI	CCWGG	4 cut(s)	213, 363, 531, 765
MwoI	GCNNNNNNNGC	2 cut(s)	886, 1132
NciI	CCSGG	1 cut(s)	537
NcoI	CCATGG	1 cut(s)	165
NdeI	CATATG	3 cut(s)	88, 855, 1330
NdeII	GATC	6 cut(s)	100, 352, 430, 778, 864, 1296
NlaIV	GGNNCC	5 cut(s)	146, 432, 481, 528, 1045
NmuCI	GTSAC	2 cut(s)	219, 604
NsiI	ATGCAT	1 cut(s)	88
NspI	RCATGY	2 cut(s)	639, 732
PciI	ACATGT	1 cut(s)	728
PfeI	GAWTC	3 cut(s)	1074, 1150, 1197
PflMI	CCANNNNNTGG	1 cut(s)	1262
PfoI	TCCNGGA	1 cut(s)	763
PkrI	GCNGC	7 cut(s)	398, 445, 448, 740, 817, 978, 1137
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
PscI	ACATGT	1 cut(s)	728
PsiI	TTATAA	1 cut(s)	180
Psp6I	CCWGG	4 cut(s)	211, 361, 529, 763
PspEI	GGTNACC	2 cut(s)	169, 919
PspFI	CCCAGC	1 cut(s)	1179
PspGI	CCWGG	4 cut(s)	211, 361, 529, 763
PspN4I	GGNNCC	5 cut(s)	146, 432, 481, 528, 1045
PspPI	GGNCC	3 cut(s)	144, 533, 1109
PstI	CTGCAG	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	818
PsuI	RGATCY	2 cut(s)	430, 778
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	2 cut(s)	374, 847
RsaNI	GTAC	2 cut(s)	373, 846
RseI	CAYNNNNRTG	3 cut(s)	226, 521, 733
SaqAI	TTAA	8 cut(s)	23, 123, 135, 306, 498, 557, 1206, 1342
SatI	GCNGC	7 cut(s)	397, 444, 447, 739, 816, 977, 1136
Sau3AI	GATC	6 cut(s)	100, 352, 430, 778, 864, 1296
Sau96I	GGNCC	3 cut(s)	144, 533, 1109
SchI	GAGTC	1 cut(s)	612
ScrFI	CCNGG	5 cut(s)	213, 363, 531, 537, 765
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	5 cut(s)	73, 414, 988, 1089, 1228
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	3 cut(s)	144, 533, 1109
SmiMI	CAYNNNNRTG	3 cut(s)	226, 521, 733
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	8 cut(s)	181, 391, 650, 826, 892, 949, 964, 985
SsiI	CCGC	3 cut(s)	320, 476, 738
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	5 cut(s)	211, 361, 529, 535, 763
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	5 cut(s)	40, 296, 690, 712, 1211
TaqI	TCGA	2 cut(s)	841, 1170
TasI	AATT	8 cut(s)	181, 391, 650, 826, 892, 949, 964, 985
TatI	WGTACW	1 cut(s)	845
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	3 cut(s)	1074, 1150, 1197
Tru1I	TTAA	8 cut(s)	23, 123, 135, 306, 498, 557, 1206, 1342
Tru9I	TTAA	8 cut(s)	23, 123, 135, 306, 498, 557, 1206, 1342
TscAI	CASTG	4 cut(s)	43, 112, 693, 1299
TseFI	GTSAC	2 cut(s)	219, 604
TseI	GCWGC	6 cut(s)	396, 443, 446, 815, 976, 1135
Tsp45I	GTSAC	2 cut(s)	219, 604
TspDTI	ATGAA	3 cut(s)	408, 723, 863
TspGWI	ACGGA	3 cut(s)	360, 780, 1056
TspRI	CASTG	4 cut(s)	43, 112, 693, 1299
Van91I	CCANNNNNTGG	1 cut(s)	1262
VpaK11BI	GGWCC	3 cut(s)	144, 533, 1109
XapI	RAATTY	3 cut(s)	826, 964, 985
XceI	RCATGY	2 cut(s)	639, 732
XspI	CTAG	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.