Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004894

Physical Location & Seq

Genomic Coordinates Reverse (-)

81064264 .. 81066998

Gene Structure 2735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG581100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGGGTTTCTGTTGTCCAAGTTAACCAGCTTTGCCACTGTCCTTCTATTTGTGCTTTGTTGCTTCAGCTTCAGCTCAACAGATGCATATGATCCTCTTGATCCCAATGGCAACATCACGATTAAGTGGGATATTATAAGCTGGACCCCTGATGGCTATGTTGCGGTTGTTACCATTTATAACTACCAGCAGTATAGACACATTCAAGCACCAGGGTGGTCGCTAGGATGGACATGGGCAAAGAAGGAGGTGATTTGGGACATGGTCGGAGGACAAGCTACCGAGCAAGGGGACTGTTCAAGATTTAAGACAACTCCGCCGCATTGCTGTAAAAAGAAACCAACCATTATTGATCTACTCCCTGGAACTCCGTACAATAAGCAATATTCCAATTGCTGCAAAGGTGGAGTGCTGAGTTCATGGATGCAGGATCCAGCCAACGCTGCAGCTTCTTTTCAACTAAGTGTTGGTCAAGCGGGAACCAGCAATAGAACAGTTAAGCGTCCAAAAAACTTCACTCTAATGGGACCTGGACCAGGGTACACTTGTGGTGCTGCAAGAGTTGTCAAACCAACTAAATACTTTTCTCCAGATAAAAGGCGAGTCTCTCAAGTCATGATGACATGGAAGTTGACATGCACATATTCACAGTTTCTGGCTCAGAAAACTCCTGCTTGCTGTGTCTCACTGTCTTCGTTCTACAATGACACAGTAGTGCCCTGCCCAATATGTTCGTGTGGCTGTCAAAACAACATAACTCATCCAGGAAGCTGTGTAGATCCAAAGTCTCCATATTTGGCTTCAGTTGTTTCAGCTGCTGACAAAAATTCGCCTTTGGTTCGATGTACTCGCCATATGTGCCCGATCAGAGTTCATTGGCATGTCAAGCTGAATTACAGAGAATACTGGCGAGTGAAGGTTACAGTTACAAACTTTGACTACAGCAGGAATTATTCAGATTGGAATTTGGTTATCCAGCATCCAAACTTTGACAATCTGACCCAAGTTTTCAGCTTCAACTCAAAGTCCTTGACCCCTTATGGAACCATAAATGATACTGCAATGCTGTGGGGAATCAAGTTCTACAACGATCTGCTGATGCAATCGGGGCCTGTCGGTAATGTGCAGTCAGAGCTGCTTTTCCGGAAGAATCCAGCAACTTTCACTTTTGAGAAGGGTTGGGCTTTCCCGAGAAGAATCTCTTTCAATGGTGATACTTGTGTAATGCCACCTCCAGACGCCTTTCCATATTTGCCAAATGCTGGTTCTCGACAGTATATCTCTCTGCTGACACTAATCATGATTTGTGCATCGACTTTTGCATTTACATATGCTTATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

447

Amino Acids

50.19

Weight (kDa)

9.08

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	53 - 216	4.1e-67	COBRA-like protein
COB_C	PF25079	226 - 416	4.6e-57	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02210 AT3G29810
fragaria_vesca	FvH4_6g46460 FvH4_6g46530
malus_domestica	MD09G1072800.v1.1 MD17G1064200.v1.1
prunus_persica	Prupe.3G250400_v2.0.a1 Prupe.3G250400_v2.0.a1
pyrus_communis	pycom12433g00030 pycom17g06430
rosa_chinensis	RchiOBHm_Chr2g0153051 RchiOBHm_Chr2g0165011 RchiOBHm_Chr2g0165171 RchiOBHm_Chr5g0001191
rosa_multiflora	Rmu_sc0001097.1_g000020 Rmu_sc0001097.1_g000043
rosa_roxburghii	Rroxscaffold_2G00085970 Rroxscaffold_2G00086120
rosa_rugosa	Rorug02G0512200 Rorug02G0512300 Rorug02G0512900
rosa_samantha	Rh2AG580300 Rh2AG581100 Rh2BG591600 Rh2BG592400 Rh2CG562100 Rh2CG563100 Rh2DG601700 Rh2DG602400
rosa_wichuraiana	Rw2G048170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	137, 180
AccB7I	CCANNNNNTGG	1 cut(s)	1262
AccIII	TCCGGA	1 cut(s)	1143
AciI	CCGC	4 cut(s)	164, 317, 320, 476
AclWI	GGATC	5 cut(s)	86, 95, 425, 438, 773
AcsI	RAATTY	2 cut(s)	826, 964
AcuI	CTGAAG	3 cut(s)	49, 55, 786
AcyI	GRCGYC	1 cut(s)	1239
AfaI	GTAC	3 cut(s)	374, 542, 847
AfiI	CCNNNNNNNGG	3 cut(s)	288, 536, 1262
AgsI	TTSAA	5 cut(s)	206, 300, 458, 1018, 1207
AjnI	CCWGG	5 cut(s)	211, 361, 529, 535, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	1249, 1281
AleI	CACNNNNGTG	2 cut(s)	214, 713
Alw26I	GTCTC	3 cut(s)	610, 688, 792
AlwI	GGATC	5 cut(s)	86, 95, 425, 438, 773
AlwNI	CAGNNNCTG	2 cut(s)	655, 818
Ama87I	CYCGRG	1 cut(s)	1189
Aor13HI	TCCGGA	1 cut(s)	1143
AoxI	GGCC	1 cut(s)	1109
ApeKI	GCWGC	6 cut(s)	396, 443, 446, 554, 815, 1135
ApoI	RAATTY	2 cut(s)	826, 964
AspS9I	GGNCC	4 cut(s)	144, 527, 533, 1109
AsuHPI	GGTGA	2 cut(s)	262, 1223
AvaI	CYCGRG	1 cut(s)	1189
AvaII	GGWCC	3 cut(s)	144, 527, 533
BaeGI	GKGCMC	2 cut(s)	720, 863
BaeI	ACNNNNGTAYC	4 cut(s)	532, 565, 1206, 1239
BamHI	GGATCC	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	684
BbvI	GCAGC	6 cut(s)	383, 430, 458, 541, 802, 1122
BccI	CCATC	2 cut(s)	146, 222
BciT130I	CCWGG	5 cut(s)	213, 363, 531, 537, 765
BcoDI	GTCTC	3 cut(s)	610, 688, 792
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	2 cut(s)	444, 940
BisI	GCNGC	7 cut(s)	320, 397, 444, 447, 555, 816, 1136
BlsI	GCNGC	7 cut(s)	321, 398, 445, 448, 556, 817, 1137
Bme1390I	CCNGG	5 cut(s)	213, 363, 531, 537, 765
Bme18I	GGWCC	3 cut(s)	144, 527, 533
BmeT110I	CYCGRG	1 cut(s)	1189
BmgT120I	GGNCC	4 cut(s)	144, 527, 533, 1109
BmiI	GGNNCC	6 cut(s)	146, 432, 481, 528, 1045, 1110
BmrFI	CCNGG	5 cut(s)	213, 363, 531, 537, 765
BmsI	GCATC	5 cut(s)	73, 414, 988, 1089, 1319
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	2 cut(s)	573, 1218
BpuEI	CTTGAG	1 cut(s)	594
BsaHI	GRCGYC	1 cut(s)	1239
BsaJI	CCNNGG	3 cut(s)	212, 361, 536
BsaWI	WCCGGW	1 cut(s)	1143
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 536, 1262
Bse1I	ACTGG	1 cut(s)	911
Bse3DI	GCAATG	2 cut(s)	322, 1068
BseAI	TCCGGA	1 cut(s)	1143
BseBI	CCWGG	5 cut(s)	213, 363, 531, 537, 765
BseDI	CCNNGG	3 cut(s)	212, 361, 536
BseGI	GGATG	4 cut(s)	233, 429, 760, 979
BseLI	CCNNNNNNNGG	3 cut(s)	288, 536, 1262
BseMI	GCAATG	2 cut(s)	322, 1068
BseMII	CTCAG	2 cut(s)	404, 674
BseNI	ACTGG	1 cut(s)	911
BseSI	GKGCMC	2 cut(s)	720, 863
BseXI	GCAGC	6 cut(s)	383, 430, 458, 541, 802, 1122
BsgI	GTGCAG	1 cut(s)	1145
BshFI	GGCC	1 cut(s)	1111
BsiHKCI	CYCGRG	1 cut(s)	1189
BsiSI	CCGG	1 cut(s)	1144
BslFI	GGGAC	3 cut(s)	272, 305, 540
BslI	CCNNNNNNNGG	3 cut(s)	288, 536, 1262
BsmAI	GTCTC	3 cut(s)	610, 688, 792
BsmFI	GGGAC	3 cut(s)	272, 305, 540
BsnI	GGCC	1 cut(s)	1111
BsoBI	CYCGRG	1 cut(s)	1189
Bsp1286I	GDGCHC	2 cut(s)	720, 863
Bsp13I	TCCGGA	1 cut(s)	1143
Bsp143I	GATC	7 cut(s)	91, 100, 352, 430, 778, 864, 1090
BspACI	CCGC	4 cut(s)	164, 317, 320, 476
BspANI	GGCC	1 cut(s)	1111
BspCNI	CTCAG	2 cut(s)	405, 673
BspEI	TCCGGA	1 cut(s)	1143
BspHI	TCATGA	2 cut(s)	615, 1299
BspLI	GGNNCC	6 cut(s)	146, 432, 481, 528, 1045, 1110
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	5 cut(s)	86, 95, 425, 438, 773
BsrDI	GCAATG	2 cut(s)	322, 1068
BsrI	ACTGG	1 cut(s)	911
BssECI	CCNNGG	3 cut(s)	212, 361, 536
BssMI	GATC	7 cut(s)	91, 100, 352, 430, 778, 864, 1090
BssNI	GRCGYC	1 cut(s)	1239
Bst2UI	CCWGG	5 cut(s)	213, 363, 531, 537, 765
Bst4CI	ACNGT	8 cut(s)	40, 296, 496, 651, 690, 712, 925, 1275
BstACI	GRCGYC	1 cut(s)	1239
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	3 cut(s)	413, 461, 660
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	4 cut(s)	233, 429, 760, 979
BstKTI	GATC	7 cut(s)	94, 103, 355, 433, 781, 867, 1093
BstMAI	GTCTC	3 cut(s)	610, 688, 792
BstMBI	GATC	7 cut(s)	91, 100, 352, 430, 778, 864, 1090
BstMWI	GCNNNNNNNGC	5 cut(s)	443, 858, 886, 1108, 1132
BstNI	CCWGG	5 cut(s)	213, 363, 531, 537, 765
BstNSI	RCATGY	2 cut(s)	639, 884
BstSCI	CCNGG	5 cut(s)	211, 361, 529, 535, 763
BstSFI	CTRYAG	2 cut(s)	444, 940
BstSLI	GKGCMC	2 cut(s)	720, 863
BstV1I	GCAGC	6 cut(s)	383, 430, 458, 541, 802, 1122
BstV2I	GAAGAC	1 cut(s)	684
BstX2I	RGATCY	2 cut(s)	430, 778
BstYI	RGATCY	2 cut(s)	430, 778
BsuRI	GGCC	1 cut(s)	1111
BtsCI	GGATG	4 cut(s)	233, 429, 760, 979
BtsIMutI	CAGTG	2 cut(s)	36, 686
Cac8I	GCNNGC	1 cut(s)	676
CaiI	CAGNNNCTG	2 cut(s)	655, 818
CciI	TCATGA	2 cut(s)	615, 1299
Cfr13I	GGNCC	4 cut(s)	144, 527, 533, 1109
CseI	GACGC	2 cut(s)	491, 1247
Csp6I	GTAC	3 cut(s)	373, 541, 846
CviAII	CATG	8 cut(s)	234, 262, 420, 616, 624, 636, 881, 1300
CviQI	GTAC	3 cut(s)	373, 541, 846
DdeI	CTNAG	3 cut(s)	413, 461, 660
DpnI	GATC	7 cut(s)	93, 102, 354, 432, 780, 866, 1092
DpnII	GATC	7 cut(s)	91, 100, 352, 430, 778, 864, 1090
EciI	GGCGGA	1 cut(s)	306
Eco47I	GGWCC	3 cut(s)	144, 527, 533
Eco57I	CTGAAG	3 cut(s)	49, 55, 786
Eco88I	CYCGRG	1 cut(s)	1189
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoO109I	RGGNCCY	2 cut(s)	527, 1109
EcoRII	CCWGG	5 cut(s)	211, 361, 529, 535, 763
EcoT22I	ATGCAT	1 cut(s)	88
FaeI	CATG	8 cut(s)	237, 265, 423, 619, 627, 639, 884, 1303
FalI	AAGNNNNNCTT	2 cut(s)	1186, 1218
FaqI	GGGAC	3 cut(s)	272, 305, 540
FatI	CATG	8 cut(s)	233, 261, 419, 615, 623, 635, 880, 1299
FauI	CCCGC	1 cut(s)	469
FauNDI	CATATG	3 cut(s)	88, 855, 1330
Fnu4HI	GCNGC	7 cut(s)	320, 397, 444, 447, 555, 816, 1136
FokI	GGATG	4 cut(s)	240, 436, 747, 966
Fsp4HI	GCNGC	7 cut(s)	320, 397, 444, 447, 555, 816, 1136
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	7 cut(s)	320, 397, 444, 447, 555, 816, 1136
GsuI	CTGGAG	2 cut(s)	573, 1218
HaeIII	GGCC	1 cut(s)	1111
HapII	CCGG	1 cut(s)	1144
HgaI	GACGC	2 cut(s)	491, 1247
Hin1I	GRCGYC	1 cut(s)	1239
Hin1II	CATG	8 cut(s)	237, 265, 423, 619, 627, 639, 884, 1303
HincII	GTYRAC	2 cut(s)	24, 633
HindII	GTYRAC	2 cut(s)	24, 633
HinfI	GANTC	4 cut(s)	603, 1074, 1150, 1197
HpaI	GTTAAC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	1144
HphI	GGTGA	2 cut(s)	262, 1223
Hpy166II	GTNNAC	3 cut(s)	24, 543, 633
Hpy188I	TCNGA	6 cut(s)	269, 663, 869, 958, 999, 1132
Hpy8I	GTNNAC	3 cut(s)	24, 543, 633
HpyAV	CCTTC	4 cut(s)	53, 238, 910, 1168
HpyCH4III	ACNGT	8 cut(s)	40, 296, 496, 651, 690, 712, 925, 1275
HpyF10VI	GCNNNNNNNGC	5 cut(s)	443, 858, 886, 1108, 1132
HpyF3I	CTNAG	3 cut(s)	413, 461, 660
Hsp92I	GRCGYC	1 cut(s)	1239
Hsp92II	CATG	8 cut(s)	237, 265, 423, 619, 627, 639, 884, 1303
Kpn2I	TCCGGA	1 cut(s)	1143
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	7 cut(s)	91, 100, 352, 430, 778, 864, 1090
Lsp1109I	GCAGC	6 cut(s)	383, 430, 458, 541, 802, 1122
LweI	GCATC	5 cut(s)	73, 414, 988, 1089, 1319
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	3 cut(s)	169, 919, 925
MalI	GATC	7 cut(s)	93, 102, 354, 432, 780, 866, 1092
MboI	GATC	7 cut(s)	91, 100, 352, 430, 778, 864, 1090
MboII	GAAGA	3 cut(s)	684, 1159, 1206
MfeI	CAATTG	1 cut(s)	391
MflI	RGATCY	2 cut(s)	430, 778
MhlI	GDGCHC	2 cut(s)	720, 863
MluCI	AATT	5 cut(s)	391, 826, 892, 949, 964
MlyI	GAGTC	1 cut(s)	612
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	4 cut(s)	105, 241, 263, 1242
Mph1103I	ATGCAT	1 cut(s)	88
MroI	TCCGGA	1 cut(s)	1143
MseI	TTAA	5 cut(s)	23, 123, 306, 498, 1342
MslI	CAYNNNNRTG	4 cut(s)	214, 521, 713, 879
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	1 cut(s)	1144
MspR9I	CCNGG	5 cut(s)	213, 363, 531, 537, 765
MunI	CAATTG	1 cut(s)	391
MvaI	CCWGG	5 cut(s)	213, 363, 531, 537, 765
MwoI	GCNNNNNNNGC	5 cut(s)	443, 858, 886, 1108, 1132
NdeI	CATATG	3 cut(s)	88, 855, 1330
NdeII	GATC	7 cut(s)	91, 100, 352, 430, 778, 864, 1090
NlaIII	CATG	8 cut(s)	237, 265, 423, 619, 627, 639, 884, 1303
NlaIV	GGNNCC	6 cut(s)	146, 432, 481, 528, 1045, 1110
NsiI	ATGCAT	1 cut(s)	88
NspI	RCATGY	2 cut(s)	639, 884
OliI	CACNNNNGTG	2 cut(s)	214, 713
PagI	TCATGA	2 cut(s)	615, 1299
PfeI	GAWTC	3 cut(s)	1074, 1150, 1197
PflFI	GACNNNGTC	1 cut(s)	263
PflMI	CCANNNNNTGG	1 cut(s)	1262
PfoI	TCCNGGA	1 cut(s)	763
PkrI	GCNGC	7 cut(s)	321, 398, 445, 448, 556, 817, 1137
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
PpuMI	RGGWCCY	1 cut(s)	527
PsiI	TTATAA	2 cut(s)	137, 180
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	5 cut(s)	211, 361, 529, 535, 763
PspGI	CCWGG	5 cut(s)	211, 361, 529, 535, 763
PspN4I	GGNNCC	6 cut(s)	146, 432, 481, 528, 1045, 1110
PspPI	GGNCC	4 cut(s)	144, 527, 533, 1109
PspPPI	RGGWCCY	1 cut(s)	527
PstI	CTGCAG	1 cut(s)	448
PstNI	CAGNNNCTG	2 cut(s)	655, 818
PsuI	RGATCY	2 cut(s)	430, 778
PsyI	GACNNNGTC	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	3 cut(s)	374, 542, 847
RsaNI	GTAC	3 cut(s)	373, 541, 846
RseI	CAYNNNNRTG	4 cut(s)	214, 521, 713, 879
SaqAI	TTAA	5 cut(s)	23, 123, 306, 498, 1342
SatI	GCNGC	7 cut(s)	320, 397, 444, 447, 555, 816, 1136
Sau3AI	GATC	7 cut(s)	91, 100, 352, 430, 778, 864, 1090
Sau96I	GGNCC	4 cut(s)	144, 527, 533, 1109
SchI	GAGTC	1 cut(s)	612
ScrFI	CCNGG	5 cut(s)	213, 363, 531, 537, 765
SduI	GDGCHC	2 cut(s)	720, 863
SfaNI	GCATC	5 cut(s)	73, 414, 988, 1089, 1319
SfcI	CTRYAG	2 cut(s)	444, 940
SinI	GGWCC	3 cut(s)	144, 527, 533
SmiMI	CAYNNNNRTG	4 cut(s)	214, 521, 713, 879
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	5 cut(s)	391, 826, 892, 949, 964
SsiI	CCGC	4 cut(s)	164, 317, 320, 476
SspI	AATATT	1 cut(s)	386
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	5 cut(s)	211, 361, 529, 535, 763
TaaI	ACNGT	8 cut(s)	40, 296, 496, 651, 690, 712, 925, 1275
TaqI	TCGA	3 cut(s)	841, 1270, 1313
TasI	AATT	5 cut(s)	391, 826, 892, 949, 964
TatI	WGTACW	1 cut(s)	845
TauI	GCSGC	1 cut(s)	322
TfiI	GAWTC	3 cut(s)	1074, 1150, 1197
Tru1I	TTAA	5 cut(s)	23, 123, 306, 498, 1342
Tru9I	TTAA	5 cut(s)	23, 123, 306, 498, 1342
TscAI	CASTG	2 cut(s)	43, 693
TseI	GCWGC	6 cut(s)	396, 443, 446, 554, 815, 1135
TspDTI	ATGAA	2 cut(s)	408, 863
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	43, 693
Tth111I	GACNNNGTC	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	1262
VpaK11BI	GGWCC	3 cut(s)	144, 527, 533
XagI	CCTNNNNNAGG	1 cut(s)	534
XapI	RAATTY	2 cut(s)	826, 964
XceI	RCATGY	2 cut(s)	639, 884
XspI	CTAG	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.