Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004894

Physical Location & Seq

Genomic Coordinates Reverse (-)

64271987 .. 64272892

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0512300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCTTCGTCTCATCAAATGGTCACCTGAGTTCTCACCATCCACCTACAAAAACACTTTCGCGCAGGTTTGGGTGCGCTTCTGGGACTTAGGGTTTGCTTACTGGGATCAGCAAACTCTATTTGAAATTGCATCAGGTCTTGGTACACCTTTAAAACTTGACACTCGAACCAAGAACCGAACAATTGGGTTGTTTGCTAGAGTTCTAGTCGACATCGACCTCTCTCAATCTCTTCATGATAAAATCAGAATCACCAGAGCAAATGGTGAGGTCGTTGTGGTCGGGGTTGAATATGAGTCACCTCCTGATATTTGTAGCAGATGTGGGATTGTAGGGCATATCGCGGCAAACTGCCATGCTGCGCCCTCTGAGAGCCCTGAGGATGCCGGTGTCCCAACTGAGCGTGGCAAGTCCGTCGCGCGCTCTACGCAGAAACGAAGGAAGAAGAATAAGTCGCGCTCCCAGCGACGTTCAAAATTAGACCCTACATCGGGTCTGGCACCAACCAGGAACATCACCTCTACTGTTAGGGCAGAGGCCGTAACAAATACGGTGGAAGAGGCTCCTTTGATTCCTGAGAACACTATAGTTTCCAGTGATAGTGTTCCTCCAGGCTTCCAAAGACTGGTTCCGGAAATTGAAGCGCAAGACTCAAGCTCCACATCAACTCCCGTGGTGTCGGCAGTGGCTCCTCCAATTGTTATCGCAGACTGTAATCAAACCTCAGAGGATTGCCCGTTGGAGGAGAGTACTGAGGTGCTAGAAGAAGGTGAATTCACACCAGTCCTTTCTAAGAAATCAAAGAAACTGCTGAAGCAGAATGACAAAACGAAAAAGAAAGTTGTCTCCCGCAAGCCCTCTGGACGTGCTCTCCTTAACAAGGGAGCTAATCTCAAGTGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

301

Amino Acids

33.07

Weight (kDa)

9.17

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02210 AT3G29810
fragaria_vesca	FvH4_6g46460 FvH4_6g46530
malus_domestica	MD09G1072800.v1.1 MD17G1064200.v1.1
prunus_persica	Prupe.3G250400_v2.0.a1 Prupe.3G250400_v2.0.a1
pyrus_communis	pycom12433g00030 pycom17g06430
rosa_chinensis	RchiOBHm_Chr2g0153051 RchiOBHm_Chr2g0165011 RchiOBHm_Chr2g0165171 RchiOBHm_Chr5g0001191
rosa_multiflora	Rmu_sc0001097.1_g000020 Rmu_sc0001097.1_g000043
rosa_roxburghii	Rroxscaffold_2G00085970 Rroxscaffold_2G00086120
rosa_rugosa	Rorug02G0512200 Rorug02G0512300 Rorug02G0512900
rosa_samantha	Rh2AG580300 Rh2AG581100 Rh2BG591600 Rh2BG592400 Rh2CG562100 Rh2CG563100 Rh2DG601700 Rh2DG602400
rosa_wichuraiana	Rw2G048170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
AccB1I	GGYRCC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	5 cut(s)	62, 344, 419, 421, 457
AccIII	TCCGGA	1 cut(s)	631
AciI	CCGC	2 cut(s)	344, 850
AclWI	GGATC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	773
AcuI	CTGAAG	1 cut(s)	833
AfaI	GTAC	2 cut(s)	145, 751
AfiI	CCNNNNNNNGG	5 cut(s)	490, 491, 625, 742, 880
AgsI	TTSAA	4 cut(s)	125, 290, 474, 641
AjiI	CACGTC	1 cut(s)	866
AjnI	CCWGG	2 cut(s)	506, 610
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AluBI	AGCT	2 cut(s)	657, 887
AluI	AGCT	2 cut(s)	657, 887
Alw21I	GWGCWC	1 cut(s)	871
Alw26I	GTCTC	2 cut(s)	14, 850
AlwI	GGATC	1 cut(s)	114
Aor13HI	TCCGGA	1 cut(s)	631
AoxI	GGCC	1 cut(s)	537
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	773
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspLEI	GCGC	7 cut(s)	64, 78, 364, 421, 423, 459, 646
AsuHPI	GGTGA	7 cut(s)	15, 27, 244, 278, 291, 508, 782
AxyI	CCTNAGG	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	871
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	524
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BciT130I	CCWGG	2 cut(s)	508, 612
BcoDI	GTCTC	2 cut(s)	14, 850
BfaI	CTAG	3 cut(s)	198, 206, 761
BfmI	CTRYAG	1 cut(s)	585
BfuAI	ACCTGC	1 cut(s)	55
BisI	GCNGC	2 cut(s)	345, 360
BlsI	GCNGC	2 cut(s)	346, 361
BmcAI	AGTACT	1 cut(s)	751
Bme1390I	CCNGG	2 cut(s)	508, 612
BmgBI	CACGTC	1 cut(s)	866
BmiI	GGNNCC	4 cut(s)	501, 564, 630, 690
BmrFI	CCNGG	2 cut(s)	508, 612
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	140, 373
BmuI	ACTGGG	1 cut(s)	112
BplI	GAGNNNNNCTC	1 cut(s)	876
BpmI	CTGGAG	1 cut(s)	594
BpuEI	CTTGAG	2 cut(s)	637, 878
BsaJI	CCNNGG	1 cut(s)	672
BsaWI	WCCGGW	1 cut(s)	631
BsaXI	ACNNNNNCTCC	6 cut(s)	641, 652, 671, 682, 855, 885
Bsc4I	CCNNNNNNNGG	5 cut(s)	490, 491, 625, 742, 880
Bse118I	RCCGGY	1 cut(s)	386
Bse1I	ACTGG	4 cut(s)	107, 594, 630, 782
Bse21I	CCTNAGG	1 cut(s)	378
BseAI	TCCGGA	1 cut(s)	631
BseBI	CCWGG	2 cut(s)	508, 612
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	2 cut(s)	38, 388
BseLI	CCNNNNNNNGG	5 cut(s)	490, 491, 625, 742, 880
BseMII	CTCAG	7 cut(s)	18, 360, 369, 390, 567, 738, 744
BseNI	ACTGG	4 cut(s)	107, 594, 630, 782
BsePI	GCGCGC	1 cut(s)	419
BseRI	GAGGAG	2 cut(s)	681, 758
BseXI	GCAGC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	462
Bsh1236I	CGCG	5 cut(s)	62, 344, 419, 421, 457
BshFI	GGCC	1 cut(s)	539
BshNI	GGYRCC	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	871
BsiSI	CCGG	2 cut(s)	387, 632
BslFI	GGGAC	2 cut(s)	98, 377
BslI	CCNNNNNNNGG	5 cut(s)	490, 491, 625, 742, 880
BsmAI	GTCTC	2 cut(s)	14, 850
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	98, 377
BsnI	GGCC	1 cut(s)	539
Bsp1286I	GDGCHC	2 cut(s)	377, 871
Bsp13I	TCCGGA	1 cut(s)	631
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	344, 850
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	7 cut(s)	19, 361, 370, 391, 568, 737, 745
BspEI	TCCGGA	1 cut(s)	631
BspFNI	CGCG	5 cut(s)	62, 344, 419, 421, 457
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	4 cut(s)	501, 564, 630, 690
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	386
BsrI	ACTGG	4 cut(s)	107, 594, 630, 782
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	672
BssHII	GCGCGC	1 cut(s)	419
BssMI	GATC	1 cut(s)	106
Bst2UI	CCWGG	2 cut(s)	508, 612
Bst4CI	ACNGT	3 cut(s)	526, 553, 713
Bst6I	CTCTTC	2 cut(s)	237, 552
BstC8I	GCNNGC	2 cut(s)	421, 854
BstDEI	CTNAG	9 cut(s)	27, 88, 369, 378, 399, 576, 724, 753, 792
BstDSI	CCRYGG	1 cut(s)	672
BstEII	GGTNACC	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	878
BstF5I	GGATG	2 cut(s)	38, 388
BstFNI	CGCG	5 cut(s)	62, 344, 419, 421, 457
BstHHI	GCGC	7 cut(s)	64, 78, 364, 421, 423, 459, 646
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	2 cut(s)	14, 850
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	427, 463
BstNI	CCWGG	2 cut(s)	508, 612
BstPI	GGTNACC	1 cut(s)	21
BstSCI	CCNGG	2 cut(s)	506, 610
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	5 cut(s)	62, 344, 419, 421, 457
BstV1I	GCAGC	1 cut(s)	346
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	539
BtgI	CCRYGG	1 cut(s)	672
BtrI	CACGTC	1 cut(s)	866
BtsCI	GGATG	2 cut(s)	38, 388
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	2 cut(s)	601, 690
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	421, 854
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	7 cut(s)	64, 78, 364, 421, 423, 459, 646
Cfr10I	RCCGGY	1 cut(s)	386
Csp6I	GTAC	2 cut(s)	144, 750
CspCI	CAANNNNNGTGG	4 cut(s)	534, 569, 654, 689
CviAII	CATG	2 cut(s)	236, 356
CviJI	RGCY	8 cut(s)	375, 539, 563, 615, 657, 689, 856, 887
CviKI_1	RGCY	8 cut(s)	375, 539, 563, 615, 657, 689, 856, 887
CviQI	GTAC	2 cut(s)	144, 750
DdeI	CTNAG	9 cut(s)	27, 88, 369, 378, 399, 576, 724, 753, 792
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
DraI	TTTAAA	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	237, 552
EarI	CTCTTC	2 cut(s)	237, 552
Eco24I	GRGCYC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	833
Eco81I	CCTNAGG	1 cut(s)	378
Eco91I	GGTNACC	1 cut(s)	21
EcoNI	CCTNNNNNAGG	1 cut(s)	878
EcoO65I	GGTNACC	1 cut(s)	21
EcoRI	GAATTC	1 cut(s)	773
EcoRII	CCWGG	2 cut(s)	506, 610
EcoT38I	GRGCYC	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	2 cut(s)	239, 359
FaiI	YATR	5 cut(s)	237, 294, 339, 357, 587
FaqI	GGGAC	2 cut(s)	98, 377
FatI	CATG	2 cut(s)	235, 355
FauI	CCCGC	1 cut(s)	857
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	345, 360
FokI	GGATG	2 cut(s)	25, 395
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	2 cut(s)	345, 360
FspBI	CTAG	3 cut(s)	198, 206, 761
GlaI	GCGC	7 cut(s)	63, 77, 363, 420, 422, 458, 645
GluI	GCNGC	2 cut(s)	345, 360
GsaI	CCCAGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	1 cut(s)	539
HapII	CCGG	2 cut(s)	387, 632
HhaI	GCGC	7 cut(s)	64, 78, 364, 421, 423, 459, 646
Hin1II	CATG	2 cut(s)	239, 359
Hin6I	GCGC	7 cut(s)	62, 76, 362, 419, 421, 457, 644
HinP1I	GCGC	7 cut(s)	62, 76, 362, 419, 421, 457, 644
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	4 cut(s)	249, 296, 571, 650
HpaII	CCGG	2 cut(s)	387, 632
HphI	GGTGA	7 cut(s)	15, 27, 244, 278, 291, 508, 782
Hpy166II	GTNNAC	2 cut(s)	146, 211
Hpy188I	TCNGA	3 cut(s)	248, 370, 727
Hpy188III	TCNNGA	5 cut(s)	236, 305, 575, 632, 861
Hpy8I	GTNNAC	2 cut(s)	146, 211
Hpy99I	CGWCG	2 cut(s)	419, 471
HpyAV	CCTTC	2 cut(s)	432, 761
HpyCH4III	ACNGT	3 cut(s)	526, 553, 713
HpyCH4IV	ACGT	2 cut(s)	469, 865
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	427, 463
HpyF3I	CTNAG	9 cut(s)	27, 88, 369, 378, 399, 576, 724, 753, 792
HpySE526I	ACGT	2 cut(s)	469, 865
Hsp92II	CATG	2 cut(s)	239, 359
HspAI	GCGC	7 cut(s)	62, 76, 362, 419, 421, 457, 644
Kpn2I	TCCGGA	1 cut(s)	631
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	5 cut(s)	464, 568, 662, 694, 884
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	140, 373
MaeI	CTAG	3 cut(s)	198, 206, 761
MaeII	ACGT	2 cut(s)	469, 865
MaeIII	GTNAC	3 cut(s)	21, 297, 541
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	5 cut(s)	224, 454, 457, 569, 776
MfeI	CAATTG	2 cut(s)	183, 696
MhlI	GDGCHC	2 cut(s)	377, 871
MluCI	AATT	6 cut(s)	126, 183, 476, 636, 696, 773
MlyI	GAGTC	2 cut(s)	305, 644
MmeI	TCCRAC	1 cut(s)	720
MroI	TCCGGA	1 cut(s)	631
MseI	TTAA	3 cut(s)	152, 876, 904
MspI	CCGG	2 cut(s)	387, 632
MspR9I	CCNGG	2 cut(s)	508, 612
MunI	CAATTG	2 cut(s)	183, 696
MvaI	CCWGG	2 cut(s)	508, 612
MvnI	CGCG	5 cut(s)	62, 344, 419, 421, 457
MwoI	GCNNNNNNNGC	2 cut(s)	427, 463
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	239, 359
NlaIV	GGNNCC	4 cut(s)	501, 564, 630, 690
NmuCI	GTSAC	2 cut(s)	21, 297
PagI	TCATGA	1 cut(s)	235
PauI	GCGCGC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	249, 571
PflMI	CCANNNNNTGG	1 cut(s)	625
PkrI	GCNGC	2 cut(s)	346, 361
PleI	GAGTC	2 cut(s)	304, 644
PpsI	GAGTC	2 cut(s)	304, 644
Psp6I	CCWGG	2 cut(s)	506, 610
PspEI	GGTNACC	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	2 cut(s)	506, 610
PspN4I	GGNNCC	4 cut(s)	501, 564, 630, 690
PteI	GCGCGC	1 cut(s)	419
RsaI	GTAC	2 cut(s)	145, 751
RsaNI	GTAC	2 cut(s)	144, 750
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	3 cut(s)	152, 876, 904
SatI	GCNGC	2 cut(s)	345, 360
Sau3AI	GATC	1 cut(s)	106
ScaI	AGTACT	1 cut(s)	751
SchI	GAGTC	2 cut(s)	305, 644
ScrFI	CCNGG	2 cut(s)	508, 612
SduI	GDGCHC	2 cut(s)	377, 871
SfaNI	GCATC	2 cut(s)	140, 373
SfcI	CTRYAG	1 cut(s)	585
SmlI	CTYRAG	2 cut(s)	652, 893
SmoI	CTYRAG	2 cut(s)	652, 893
Sse9I	AATT	6 cut(s)	126, 183, 476, 636, 696, 773
SsiI	CCGC	2 cut(s)	344, 850
SspMI	CTAG	3 cut(s)	198, 206, 761
StyD4I	CCNGG	2 cut(s)	506, 610
TaaI	ACNGT	3 cut(s)	526, 553, 713
TaiI	ACGT	2 cut(s)	472, 868
TaqI	TCGA	3 cut(s)	166, 210, 216
TasI	AATT	6 cut(s)	126, 183, 476, 636, 696, 773
TatI	WGTACW	1 cut(s)	749
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	249, 571
Tru1I	TTAA	3 cut(s)	152, 876, 904
Tru9I	TTAA	3 cut(s)	152, 876, 904
TscAI	CASTG	2 cut(s)	601, 690
TseFI	GTSAC	2 cut(s)	21, 297
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	2 cut(s)	21, 297
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	403
TspRI	CASTG	2 cut(s)	601, 690
Van91I	CCANNNNNTGG	1 cut(s)	625
XagI	CCTNNNNNAGG	1 cut(s)	878
XapI	RAATTY	1 cut(s)	773
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	3 cut(s)	198, 206, 761
ZrmI	AGTACT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.