Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002246

Physical Location & Seq

Genomic Coordinates Reverse (-)

1071984 .. 1074244

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATGGGTGTGTTGAAGTCGGCGATTGGGGATATGTTGATGACCTTCTCTTGGGTTGTCCTCTCCGCTACCTTTGGAATTCAGACGGCGGCGATTATCTCCGCCGGTGATTTTCAGGCAATCACTTGGGCTCCGTTGGTGATTTTGACGTCGTTGATTTTCGTCTACGTCTCGATCTTCACCGTTATCTTCGGTAGCGCTAGCTTCAATCCTACCGGAAGCGCTGCCTTTTATGTCGCCGGTGTCCCCGGAGATACTCTTTTCTCCTTGGCGATTAGATTACCTGCTCAGGCAATTGGTGCTGCAGGAGGTGCATTGGCGATCATGGAGTTCATACCAGAGAAATACAAGCATATGATTGGAGGTCCTTCTCTTCAGGTTGATGTGCACACTGGAGCTATTGCTGAAACGATCTTAAGTTTTGGTATTACCTTTGCGGTTTTGCTAATTATCCTCAGGGGTCCACGGAGATTGCTTGCTAAGACGTTCTTGCTTGCTCTTGCAACCATCTCATTTGTTGTCGCCGGATCTAAATACACTGGACCAGCCATGAATCCTGCCATTGCGTTTGGATGGGCATACATGTACAGCTCCCACAACACATGGGACCATATCTACGTCTACTGGATCAGTTCTTTCGTAGGAGCATTATCTGCTGCATTGCTTTTCCGTTCTATCTTCCCGCCACCTCGGCCCCAGAAGAAGAAACAAAAGAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012505 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

240

Amino Acids

25.71

Weight (kDa)

9.8

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	4 - 223	2.3e-11	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04090 AT5G18290 AT5G18290
fragaria_vesca	FvH4_6g00600 FvH4_6g00600 FvH4_6g43020 FvH4_6g43030
malus_domestica	MD09G1110400.v1.1 MD14G1000500.v1.1 MD17G1098100.v1.1
prunus_persica	Prupe.3G216100_v2.0.a1 Prupe.7G000900_v2.0.a1
pyrus_communis	pycom09g03280 pycom49g00030
rosa_chinensis	RchiOBHm_Chr2g0159011 RchiOBHm_Chr2g0159031 RchiOBHm_Chr3g0497551 RchiOBHm_Chr5g0069711
rosa_laevigata	RLG00000021130 RLG00000021131 RLG00000022454
rosa_multiflora	Rmu_co8255671.1_g000001 Rmu_sc0000212.1_g000020 Rmu_sc0008836.1_g000002 Rmu_sc0012866.1_g000001 Rmu_ssc0000226.1_g000032
rosa_roxburghii	Rroxscaffold_6G00387940
rosa_rugosa	Rorug02G0473400 Rorug02G0473500 Rorug03G0293400 Rorug03G0293400 Rorug03G0293400
rosa_samantha	Rh2BG552800 Rh2BG552900 Rh2DG562800 Rh2DG562900 Rh3AG337500 Rh3BG375800 Rh3CG371800 Rh3DG372400
rosa_wichuraiana	Rw0G011440 Rw2G044700 Rw2G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	292
AccI	GTMKAC	2 cut(s)	165, 621
AciI	CCGC	5 cut(s)	66, 89, 102, 437, 683
AclWI	GGATC	2 cut(s)	535, 635
AcsI	RAATTY	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	587
AfeI	AGCGCT	2 cut(s)	199, 223
AfiI	CCNNNNNNNGG	1 cut(s)	51
AflII	CTTAAG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	2 cut(s)	16, 208
AluBI	AGCT	3 cut(s)	204, 398, 591
AluI	AGCT	3 cut(s)	204, 398, 591
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	175
Alw44I	GTGCAC	1 cut(s)	386
AlwI	GGATC	2 cut(s)	535, 635
Aor51HI	AGCGCT	2 cut(s)	199, 223
AoxI	GGCC	1 cut(s)	692
ApaLI	GTGCAC	1 cut(s)	386
ApeKI	GCWGC	3 cut(s)	224, 302, 656
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	2 cut(s)	200, 224
AspS9I	GGNCC	5 cut(s)	365, 461, 542, 607, 693
AsuC2I	CCSGG	1 cut(s)	249
AsuHPI	GGTGA	3 cut(s)	119, 151, 172
AsuNHI	GCTAGC	1 cut(s)	200
AvaII	GGWCC	4 cut(s)	365, 461, 542, 607
AxyI	CCTNAGG	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	211, 289, 643
BccI	CCATC	2 cut(s)	515, 567
BceAI	ACGGC	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	303
BfoI	RGCGCY	2 cut(s)	201, 225
BfrI	CTTAAG	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	292
BglI	GCCNNNNNGGC	1 cut(s)	691
BisI	GCNGC	4 cut(s)	90, 225, 303, 657
BlsI	GCNGC	4 cut(s)	91, 226, 304, 658
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	4 cut(s)	365, 461, 542, 607
BmgT120I	GGNCC	5 cut(s)	365, 461, 542, 607, 693
BmiI	GGNNCC	4 cut(s)	132, 462, 608, 695
BmrFI	CCNGG	1 cut(s)	249
BmtI	GCTAGC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	247, 267, 464, 689
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse118I	RCCGGY	2 cut(s)	104, 239
Bse1I	ACTGG	3 cut(s)	397, 544, 629
Bse21I	CCTNAGG	1 cut(s)	455
Bse3DI	GCAATG	2 cut(s)	561, 659
BseDI	CCNNGG	4 cut(s)	247, 267, 464, 689
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMI	GCAATG	2 cut(s)	561, 659
BseMII	CTCAG	2 cut(s)	302, 469
BseNI	ACTGG	3 cut(s)	397, 544, 629
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	3 cut(s)	211, 289, 643
BshFI	GGCC	1 cut(s)	694
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	5 cut(s)	105, 216, 240, 249, 525
BslFI	GGGAC	2 cut(s)	230, 620
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	175
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	2 cut(s)	230, 620
BsnI	GGCC	1 cut(s)	694
Bsp1286I	GDGCHC	2 cut(s)	133, 390
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	5 cut(s)	174, 321, 411, 527, 627
BspACI	CCGC	5 cut(s)	66, 89, 102, 437, 683
BspANI	GGCC	1 cut(s)	694
BspCNI	CTCAG	2 cut(s)	301, 468
BspLI	GGNNCC	4 cut(s)	132, 462, 608, 695
BspMAI	CTGCAG	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	535, 635
BspTI	CTTAAG	1 cut(s)	415
BsrDI	GCAATG	2 cut(s)	561, 659
BsrFI	RCCGGY	2 cut(s)	104, 239
BsrGI	TGTACA	1 cut(s)	585
BsrI	ACTGG	3 cut(s)	397, 544, 629
BssAI	RCCGGY	2 cut(s)	104, 239
BssECI	CCNNGG	4 cut(s)	247, 267, 464, 689
BssMI	GATC	5 cut(s)	174, 321, 411, 527, 627
BssNI	GRCGYC	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	149
BstAFI	CTTAAG	1 cut(s)	415
BstAPI	GCANNNNNTGC	3 cut(s)	299, 311, 653
BstAUI	TGTACA	1 cut(s)	585
BstC8I	GCNNGC	3 cut(s)	202, 477, 495
BstDEI	CTNAG	3 cut(s)	288, 455, 480
BstDSI	CCRYGG	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	578
BstH2I	RGCGCY	2 cut(s)	201, 225
BstHHI	GCGC	2 cut(s)	200, 224
BstKTI	GATC	5 cut(s)	177, 324, 414, 530, 630
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	5 cut(s)	174, 321, 411, 527, 627
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 311, 653, 691
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	3 cut(s)	211, 289, 643
BstX2I	RGATCY	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	527
Bsu36I	CCTNAGG	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	694
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	578
BtsIMutI	CAGTG	2 cut(s)	390, 537
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	202, 477, 495
CfoI	GCGC	2 cut(s)	200, 224
Cfr10I	RCCGGY	2 cut(s)	104, 239
Cfr13I	GGNCC	5 cut(s)	365, 461, 542, 607, 693
Csp6I	GTAC	1 cut(s)	586
CspCI	CAANNNNNGTGG	2 cut(s)	453, 488
CviAII	CATG	4 cut(s)	325, 550, 583, 603
CviJI	RGCY	7 cut(s)	131, 204, 398, 548, 591, 694, 719
CviKI_1	RGCY	7 cut(s)	131, 204, 398, 548, 591, 694, 719
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	3 cut(s)	288, 455, 480
DpnI	GATC	5 cut(s)	176, 323, 413, 529, 629
DpnII	GATC	5 cut(s)	174, 321, 411, 527, 627
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	4 cut(s)	365, 461, 542, 607
Eco47III	AGCGCT	2 cut(s)	199, 223
Eco57I	CTGAAG	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	4 cut(s)	328, 553, 586, 606
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	2 cut(s)	230, 620
FatI	CATG	4 cut(s)	324, 549, 582, 602
FauI	CCCGC	1 cut(s)	690
FauNDI	CATATG	1 cut(s)	354
FblI	GTMKAC	2 cut(s)	165, 621
Fnu4HI	GCNGC	4 cut(s)	90, 225, 303, 657
FokI	GGATG	1 cut(s)	585
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	4 cut(s)	90, 225, 303, 657
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	2 cut(s)	199, 223
GluI	GCNGC	4 cut(s)	90, 225, 303, 657
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	2 cut(s)	201, 225
HaeIII	GGCC	1 cut(s)	694
HapII	CCGG	5 cut(s)	105, 216, 240, 249, 525
HhaI	GCGC	2 cut(s)	200, 224
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	4 cut(s)	328, 553, 586, 606
Hin6I	GCGC	2 cut(s)	198, 222
HinP1I	GCGC	2 cut(s)	198, 222
HinfI	GANTC	1 cut(s)	553
HpaII	CCGG	5 cut(s)	105, 216, 240, 249, 525
HphI	GGTGA	3 cut(s)	119, 151, 172
Hpy166II	GTNNAC	4 cut(s)	166, 388, 464, 622
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	4 cut(s)	166, 388, 464, 622
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	55, 378
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	4 cut(s)	149, 168, 485, 618
HpyCH4V	TGCA	5 cut(s)	305, 314, 388, 503, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 311, 653, 691
HpyF3I	CTNAG	3 cut(s)	288, 455, 480
HpySE526I	ACGT	4 cut(s)	149, 168, 485, 618
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	4 cut(s)	328, 553, 586, 606
HspAI	GCGC	2 cut(s)	198, 222
Kzo9I	GATC	5 cut(s)	174, 321, 411, 527, 627
LmnI	GCTCC	4 cut(s)	136, 395, 596, 644
Lsp1109I	GCAGC	3 cut(s)	211, 289, 643
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	4 cut(s)	149, 168, 485, 618
MalI	GATC	5 cut(s)	176, 323, 413, 529, 629
MboI	GATC	5 cut(s)	174, 321, 411, 527, 627
MboII	GAAGA	6 cut(s)	169, 181, 365, 670, 712, 715
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	1 cut(s)	527
MhlI	GDGCHC	2 cut(s)	133, 390
MluCI	AATT	3 cut(s)	78, 294, 447
MnlI	CCTC	5 cut(s)	71, 302, 356, 464, 699
MseI	TTAA	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	415
MspI	CCGG	5 cut(s)	105, 216, 240, 249, 525
MspR9I	CCNGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	299, 311, 653, 691
NciI	CCSGG	1 cut(s)	249
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	5 cut(s)	174, 321, 411, 527, 627
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	4 cut(s)	328, 553, 586, 606
NlaIV	GGNNCC	4 cut(s)	132, 462, 608, 695
NmeAIII	GCCGAG	1 cut(s)	670
NspI	RCATGY	1 cut(s)	586
PciI	ACATGT	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	553
PkrI	GCNGC	4 cut(s)	91, 226, 304, 658
PpuMI	RGGWCCY	1 cut(s)	365
PscI	ACATGT	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	365
PspN4I	GGNNCC	4 cut(s)	132, 462, 608, 695
PspPI	GGNCC	5 cut(s)	365, 461, 542, 607, 693
PspPPI	RGGWCCY	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	527
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	4 cut(s)	90, 225, 303, 657
Sau3AI	GATC	5 cut(s)	174, 321, 411, 527, 627
Sau96I	GGNCC	5 cut(s)	365, 461, 542, 607, 693
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	2 cut(s)	133, 390
SfcI	CTRYAG	1 cut(s)	303
SgrAI	CRCCGGYG	2 cut(s)	104, 239
SinI	GGWCC	4 cut(s)	365, 461, 542, 607
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	3 cut(s)	78, 294, 447
SsiI	CCGC	5 cut(s)	66, 89, 102, 437, 683
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	4 cut(s)	152, 171, 488, 621
TaqI	TCGA	1 cut(s)	173
TasI	AATT	3 cut(s)	78, 294, 447
TatI	WGTACW	1 cut(s)	585
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	2 cut(s)	397, 544
TseI	GCWGC	3 cut(s)	224, 302, 656
TspDTI	ATGAA	2 cut(s)	322, 566
TspGWI	ACGGA	3 cut(s)	123, 481, 659
TspRI	CASTG	2 cut(s)	397, 544
Vha464I	CTTAAG	1 cut(s)	415
VneI	GTGCAC	1 cut(s)	386
VpaK11BI	GGWCC	4 cut(s)	365, 461, 542, 607
XapI	RAATTY	1 cut(s)	78
XceI	RCATGY	1 cut(s)	586
XmiI	GTMKAC	2 cut(s)	165, 621
XspI	CTAG	1 cut(s)	201
ZraI	GACGTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.