Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008836.1

Orthogroup ID

OG0002246

Physical Location & Seq

Genomic Coordinates Forward (+)

15483 .. 16848

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008836.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgaaggctgctttgggagatgtggtgttgacgtttatgtgggttttctgcgcatcgacgcttggactgatgacgagtctgatcgcaaatgcaattgggcttcaaggccccgagctctgggcttctttcggcatcaccacttgcctcgtcttcgtcctcgtcttcgtcttcaccatcatcggagacgctttgggtggggccagcttcaaccccactggcaccgcctctttctatgccgccggcgttggtgccgacaccctcttctccatggccctccgctttcctgcccagactttgggtgctgtgggtggcgctctggccattaaggaagtcatcccccctcagtacaagcacatgattggaggcccctccttaaaagttgacttgcataccggagctattgccgagggggtcttgactttccttatctccttcattgtccttgtcatcatcctcaggggtcctcgtagctcattcctgaagacattgcttcttgctgtggtgactgtcgcattggttgttgctggttctgtctatactgggccttccatgaatcctgctaatattgttctattgtcattctgctacatagctttgcttccaacaaacttttggtttctacatggtgatgcatcactgaggaatttacttctcccagaacttaggaatgagtacacttggatatgtagatggattttctttgagtgcatcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012505 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

238

Amino Acids

25.49

Weight (kDa)

7.64

Isoelectric Point (pI)

26.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04090 AT5G18290 AT5G18290
fragaria_vesca	FvH4_6g00600 FvH4_6g00600 FvH4_6g43020 FvH4_6g43030
malus_domestica	MD09G1110400.v1.1 MD14G1000500.v1.1 MD17G1098100.v1.1
prunus_persica	Prupe.3G216100_v2.0.a1 Prupe.7G000900_v2.0.a1
pyrus_communis	pycom09g03280 pycom49g00030
rosa_chinensis	RchiOBHm_Chr2g0159011 RchiOBHm_Chr2g0159031 RchiOBHm_Chr3g0497551 RchiOBHm_Chr5g0069711
rosa_laevigata	RLG00000021130 RLG00000021131 RLG00000022454
rosa_multiflora	Rmu_co8255671.1_g000001 Rmu_sc0000212.1_g000020 Rmu_sc0008836.1_g000002 Rmu_sc0012866.1_g000001 Rmu_ssc0000226.1_g000032
rosa_roxburghii	Rroxscaffold_6G00387940
rosa_rugosa	Rorug02G0473400 Rorug02G0473500 Rorug03G0293400 Rorug03G0293400 Rorug03G0293400
rosa_samantha	Rh2BG552800 Rh2BG552900 Rh2DG562800 Rh2DG562900 Rh3AG337500 Rh3BG375800 Rh3CG371800 Rh3DG372400
rosa_wichuraiana	Rw0G011440 Rw2G044700 Rw2G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	52
AccB1I	GGYRCC	2 cut(s)	218, 248
AccB7I	CCANNNNNTGG	1 cut(s)	295
AciI	CCGC	3 cut(s)	222, 237, 277
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	2 cut(s)	347, 674
AfiI	CCNNNNNNNGG	2 cut(s)	117, 295
AgsI	TTSAA	2 cut(s)	104, 208
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	5 cut(s)	115, 204, 398, 471, 593
AluI	AGCT	5 cut(s)	115, 204, 398, 471, 593
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	6 cut(s)	106, 198, 270, 318, 364, 542
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	643
AspLEI	GCGC	2 cut(s)	53, 314
AspS9I	GGNCC	6 cut(s)	107, 198, 271, 365, 461, 542
AsuHPI	GGTGA	4 cut(s)	127, 163, 514, 638
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	461
AxyI	CCTNAGG	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	320
BanI	GGYRCC	2 cut(s)	218, 248
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	4 cut(s)	142, 154, 160, 488
Bbv12I	GWGCWC	1 cut(s)	117
BccI	CCATC	2 cut(s)	182, 684
BcoDI	GTCTC	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	315
BisI	GCNGC	2 cut(s)	9, 237
BlsI	GCNGC	2 cut(s)	10, 238
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	6 cut(s)	107, 198, 271, 365, 461, 542
BmiI	GGNNCC	6 cut(s)	109, 199, 220, 250, 367, 462
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	4 cut(s)	62, 141, 619, 641
BmuI	ACTGGG	1 cut(s)	549
BpiI	GAAGAC	4 cut(s)	142, 154, 160, 488
BsaJI	CCNNGG	2 cut(s)	267, 405
BsaWI	WCCGGW	1 cut(s)	392
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 295
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	220, 544
Bse21I	CCTNAGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	485
BseDI	CCNNGG	2 cut(s)	267, 405
BseGI	GGATG	2 cut(s)	333, 450
BseLI	CCNNNNNNNGG	2 cut(s)	117, 295
BseMI	GCAATG	1 cut(s)	485
BseMII	CTCAG	3 cut(s)	356, 469, 629
BseNI	ACTGG	2 cut(s)	220, 544
BshFI	GGCC	6 cut(s)	108, 200, 272, 320, 366, 544
BshNI	GGYRCC	2 cut(s)	218, 248
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	240, 393
BslI	CCNNNNNNNGG	2 cut(s)	117, 295
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BsnI	GGCC	6 cut(s)	108, 200, 272, 320, 366, 544
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	3 cut(s)	222, 237, 277
BspANI	GGCC	6 cut(s)	108, 200, 272, 320, 366, 544
BspCNI	CTCAG	3 cut(s)	355, 468, 630
BspLI	GGNNCC	6 cut(s)	109, 199, 220, 250, 367, 462
BspT107I	GGYRCC	2 cut(s)	218, 248
BsrDI	GCAATG	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	220, 544
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	267, 405
BssMI	GATC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	202, 241
BstDEI	CTNAG	4 cut(s)	342, 455, 638, 662
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	333, 450
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	2 cut(s)	53, 314
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	81
BstV2I	GAAGAC	4 cut(s)	142, 154, 160, 488
Bsu36I	CCTNAGG	1 cut(s)	455
BsuRI	GGCC	6 cut(s)	108, 200, 272, 320, 366, 544
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	333, 450
BtsIMutI	CAGTG	2 cut(s)	213, 635
Cac8I	GCNNGC	2 cut(s)	202, 241
CfoI	GCGC	2 cut(s)	53, 314
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	6 cut(s)	107, 198, 271, 365, 461, 542
CseI	GACGC	2 cut(s)	67, 194
Csp6I	GTAC	2 cut(s)	346, 673
CviAII	CATG	4 cut(s)	268, 355, 550, 623
CviQI	GTAC	2 cut(s)	346, 673
DdeI	CTNAG	4 cut(s)	342, 455, 638, 662
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	461
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	500
Eco81I	CCTNAGG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	115
EcoO109I	RGGNCCY	3 cut(s)	107, 365, 461
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	4 cut(s)	271, 358, 553, 626
FatI	CATG	4 cut(s)	267, 354, 549, 622
Fnu4HI	GCNGC	2 cut(s)	9, 237
FokI	GGATG	2 cut(s)	320, 437
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	9, 237
FspI	TGCGCA	1 cut(s)	52
GlaI	GCGC	2 cut(s)	52, 313
GluI	GCNGC	2 cut(s)	9, 237
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	6 cut(s)	108, 200, 272, 320, 366, 544
HapII	CCGG	2 cut(s)	240, 393
HgaI	GACGC	2 cut(s)	67, 194
HhaI	GCGC	2 cut(s)	53, 314
Hin1II	CATG	4 cut(s)	271, 358, 553, 626
Hin6I	GCGC	2 cut(s)	51, 312
HinP1I	GCGC	2 cut(s)	51, 312
HincII	GTYRAC	2 cut(s)	30, 382
HindII	GTYRAC	2 cut(s)	30, 382
HinfI	GANTC	2 cut(s)	76, 553
HpaII	CCGG	2 cut(s)	240, 393
HphI	GGTGA	4 cut(s)	127, 163, 514, 638
Hpy166II	GTNNAC	3 cut(s)	30, 382, 675
Hpy188I	TCNGA	2 cut(s)	81, 182
Hpy188III	TCNNGA	2 cut(s)	415, 478
Hpy8I	GTNNAC	3 cut(s)	30, 382, 675
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	442, 555
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	4 cut(s)	92, 388, 632, 708
HpyF3I	CTNAG	4 cut(s)	342, 455, 638, 662
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	4 cut(s)	271, 358, 553, 626
HspAI	GCGC	2 cut(s)	51, 312
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	395
LweI	GCATC	4 cut(s)	62, 141, 619, 641
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	5 cut(s)	142, 154, 160, 253, 493
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	2 cut(s)	93, 643
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	626
Mox20I	TGGCCA	1 cut(s)	320
Mph1103I	ATGCAT	1 cut(s)	634
MreI	CGCCGGCG	1 cut(s)	239
MroNI	GCCGGC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	2 cut(s)	324, 374
MslI	CAYNNNNRTG	1 cut(s)	627
Msp20I	TGGCCA	1 cut(s)	320
MspI	CCGG	2 cut(s)	240, 393
MunI	CAATTG	1 cut(s)	93
NaeI	GCCGGC	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	81
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	4 cut(s)	271, 358, 553, 626
NlaIV	GGNNCC	6 cut(s)	109, 199, 220, 250, 367, 462
NmeAIII	GCCGAG	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	502
NsbI	TGCGCA	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	634
PdiI	GCCGGC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	553
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	10, 238
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PpuMI	RGGWCCY	1 cut(s)	461
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	461
PspN4I	GGNNCC	6 cut(s)	109, 199, 220, 250, 367, 462
PspPI	GGNCC	6 cut(s)	107, 198, 271, 365, 461, 542
PspPPI	RGGWCCY	1 cut(s)	461
RsaI	GTAC	2 cut(s)	347, 674
RsaNI	GTAC	2 cut(s)	346, 673
RseI	CAYNNNNRTG	1 cut(s)	627
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	324, 374
SatI	GCNGC	2 cut(s)	9, 237
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	6 cut(s)	107, 198, 271, 365, 461, 542
SchI	GAGTC	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	6 cut(s)	35, 117, 206, 400, 473, 595
SfaNI	GCATC	4 cut(s)	62, 141, 619, 641
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	627
Sse9I	AATT	2 cut(s)	93, 643
SsiI	CCGC	3 cut(s)	222, 237, 277
SspI	AATATT	1 cut(s)	565
SstI	GAGCTC	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	56
TasI	AATT	2 cut(s)	93, 643
TatI	WGTACW	2 cut(s)	345, 672
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	2 cut(s)	324, 374
Tru9I	TTAA	2 cut(s)	324, 374
TscAI	CASTG	2 cut(s)	220, 642
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	3 cut(s)	17, 424, 566
TspRI	CASTG	2 cut(s)	220, 642
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	1 cut(s)	643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	609
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.