Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000226.1

Orthogroup ID

OG0002246

Physical Location & Seq

Genomic Coordinates Forward (+)

111099 .. 111752

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000226.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgcgtgttttcacatccatcatagcttcatttcttggtttccaagctaggtccttggttggccgtttcatcaccaccatacatgccacagttctggtcctgatattcagcatgattggcaagctcttgggtggtgccagcttcaatccctccaccactgtcagtttgtacgccgccggcctcaacccaggaacttccctgatctcaatggcagtccagttcccggctcaggcggccggcggagcaggtggcgccaaggccatcctgcaagtgatgcctaaaaagtatgaacattttgtcaaagggccttctctgaaagtggatgtgaaaagtggtgctattgctgaagggttgttcactttttctctttgcttttctctgctttgggttatgcttaggggtcctaagaatctttttctgcaaatatggttggttaaagtggccactgtgggattggctattgtgggaagtgggtacacagggccttctatgaaccctgctaatgcttttggctgggcttatgttgataactggcacaatacttgggagctgttctatgtttattgggttggtcctttaattggagcagctttggctgctagggtcttcaagattttgtttcctccaccagaaacaaaggagaagaaagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

217

Amino Acids

23.32

Weight (kDa)

9.96

Isoelectric Point (pI)

21.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04090 AT5G18290 AT5G18290
fragaria_vesca	FvH4_6g00600 FvH4_6g00600 FvH4_6g43020 FvH4_6g43030
malus_domestica	MD09G1110400.v1.1 MD14G1000500.v1.1 MD17G1098100.v1.1
prunus_persica	Prupe.3G216100_v2.0.a1 Prupe.7G000900_v2.0.a1
pyrus_communis	pycom09g03280 pycom49g00030
rosa_chinensis	RchiOBHm_Chr2g0159011 RchiOBHm_Chr2g0159031 RchiOBHm_Chr3g0497551 RchiOBHm_Chr5g0069711
rosa_laevigata	RLG00000021130 RLG00000021131 RLG00000022454
rosa_multiflora	Rmu_co8255671.1_g000001 Rmu_sc0000212.1_g000020 Rmu_sc0008836.1_g000002 Rmu_sc0012866.1_g000001 Rmu_ssc0000226.1_g000032
rosa_roxburghii	Rroxscaffold_6G00387940
rosa_rugosa	Rorug02G0473400 Rorug02G0473500 Rorug03G0293400 Rorug03G0293400 Rorug03G0293400
rosa_samantha	Rh2BG552800 Rh2BG552900 Rh2DG562800 Rh2DG562900 Rh3AG337500 Rh3BG375800 Rh3CG371800 Rh3DG372400
rosa_wichuraiana	Rw0G011440 Rw2G044700 Rw2G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	236
AccB1I	GGYRCC	2 cut(s)	134, 251
AciI	CCGC	3 cut(s)	174, 233, 240
AcoI	YGGCCR	3 cut(s)	61, 234, 441
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	170, 476
AfiI	CCNNNNNNNGG	3 cut(s)	223, 229, 581
AgsI	TTSAA	2 cut(s)	145, 610
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	6 cut(s)	26, 47, 124, 141, 550, 590
AluI	AGCT	6 cut(s)	26, 47, 124, 141, 550, 590
AoxI	GGCC	7 cut(s)	61, 178, 234, 258, 305, 441, 482
ApeKI	GCWGC	2 cut(s)	587, 596
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	6 cut(s)	51, 97, 305, 401, 482, 572
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	4 cut(s)	51, 97, 401, 572
BalI	TGGCCA	1 cut(s)	443
BanI	GGYRCC	2 cut(s)	134, 251
BbsI	GAAGAC	1 cut(s)	598
BbvI	GCAGC	2 cut(s)	583, 599
BccI	CCATC	2 cut(s)	26, 269
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	2 cut(s)	48, 600
BfoI	RGCGCY	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	4 cut(s)	174, 234, 588, 597
BlsI	GCNGC	4 cut(s)	175, 235, 589, 598
Bme1390I	CCNGG	2 cut(s)	189, 224
Bme18I	GGWCC	4 cut(s)	51, 97, 401, 572
BmgT120I	GGNCC	6 cut(s)	51, 97, 305, 401, 482, 572
BmiI	GGNNCC	3 cut(s)	136, 253, 402
BmrFI	CCNGG	2 cut(s)	189, 224
BmsI	GCATC	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	598
Bpu10I	CCTNAGC	2 cut(s)	228, 395
BpuMI	CCSGG	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	54, 187, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 229, 581
Bse118I	RCCGGY	2 cut(s)	176, 236
Bse1I	ACTGG	2 cut(s)	217, 536
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	54, 187, 255
BseGI	GGATG	3 cut(s)	14, 261, 328
BseLI	CCNNNNNNNGG	3 cut(s)	223, 229, 581
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	2 cut(s)	217, 536
BseX3I	CGGCCG	1 cut(s)	234
BseXI	GCAGC	2 cut(s)	583, 599
BseYI	CCCAGC	1 cut(s)	513
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	7 cut(s)	63, 180, 236, 260, 307, 443, 484
BshNI	GGYRCC	2 cut(s)	134, 251
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	177, 224, 237
BslI	CCNNNNNNNGG	3 cut(s)	223, 229, 581
BsnI	GGCC	7 cut(s)	63, 180, 236, 260, 307, 443, 484
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	3 cut(s)	174, 233, 240
BspANI	GGCC	7 cut(s)	63, 180, 236, 260, 307, 443, 484
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	3 cut(s)	136, 253, 402
BspMI	ACCTGC	1 cut(s)	236
BspT107I	GGYRCC	2 cut(s)	134, 251
BsrFI	RCCGGY	2 cut(s)	176, 236
BsrI	ACTGG	2 cut(s)	217, 536
BssAI	RCCGGY	2 cut(s)	176, 236
BssECI	CCNNGG	3 cut(s)	54, 187, 255
BssMI	GATC	1 cut(s)	201
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	2 cut(s)	54, 255
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	3 cut(s)	91, 160, 448
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstC8I	GCNNGC	4 cut(s)	122, 139, 178, 238
BstDEI	CTNAG	3 cut(s)	228, 395, 405
BstF5I	GGATG	3 cut(s)	14, 261, 328
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	7 cut(s)	117, 233, 242, 251, 274, 593, 596
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	187, 222
BstV1I	GCAGC	2 cut(s)	583, 599
BstV2I	GAAGAC	1 cut(s)	598
BstXI	CCANNNNNNTGG	1 cut(s)	94
BstZI	CGGCCG	1 cut(s)	234
BsuRI	GGCC	7 cut(s)	63, 180, 236, 260, 307, 443, 484
BtsCI	GGATG	3 cut(s)	14, 261, 328
BtsIMutI	CAGTG	2 cut(s)	156, 444
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	4 cut(s)	122, 139, 178, 238
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	2 cut(s)	176, 236
Cfr13I	GGNCC	6 cut(s)	51, 97, 305, 401, 482, 572
Csp6I	GTAC	2 cut(s)	169, 475
CviAII	CATG	2 cut(s)	83, 112
CviQI	GTAC	2 cut(s)	169, 475
DdeI	CTNAG	3 cut(s)	228, 395, 405
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
EaeI	YGGCCR	3 cut(s)	61, 234, 441
EagI	CGGCCG	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	255
EclXI	CGGCCG	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	54, 255
Eco47I	GGWCC	4 cut(s)	51, 97, 401, 572
Eco52I	CGGCCG	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	366
EcoO109I	RGGNCCY	4 cut(s)	51, 305, 401, 482
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	54, 255
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
ErhI	CCWWGG	2 cut(s)	54, 255
FaeI	CATG	2 cut(s)	86, 115
FatI	CATG	2 cut(s)	82, 111
Fnu4HI	GCNGC	4 cut(s)	174, 234, 588, 597
FokI	GGATG	2 cut(s)	248, 335
Fsp4HI	GCNGC	4 cut(s)	174, 234, 588, 597
FspBI	CTAG	2 cut(s)	48, 600
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	4 cut(s)	174, 234, 588, 597
GsaI	CCCAGC	1 cut(s)	517
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	7 cut(s)	63, 180, 236, 260, 307, 443, 484
HapII	CCGG	3 cut(s)	177, 224, 237
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	86, 115
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	409
HpaII	CCGG	3 cut(s)	177, 224, 237
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	357, 477
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	2 cut(s)	100, 610
Hpy8I	GTNNAC	2 cut(s)	357, 477
HpyAV	CCTTC	3 cut(s)	318, 341, 495
HpyCH4III	ACNGT	3 cut(s)	91, 160, 448
HpyCH4V	TGCA	2 cut(s)	268, 421
HpyF10VI	GCNNNNNNNGC	7 cut(s)	117, 233, 242, 251, 274, 593, 596
HpyF3I	CTNAG	3 cut(s)	228, 395, 405
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	86, 115
HspAI	GCGC	1 cut(s)	252
KasI	GGCGCC	1 cut(s)	251
KroI	GCCGGC	2 cut(s)	176, 236
KroNI	GCCGGC	2 cut(s)	178, 238
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	3 cut(s)	242, 547, 584
Lsp1109I	GCAGC	2 cut(s)	583, 599
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	2 cut(s)	48, 600
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	1 cut(s)	598
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	1 cut(s)	579
MluNI	TGGCCA	1 cut(s)	443
Mly113I	GGCGCC	1 cut(s)	252
MnlI	CCTC	3 cut(s)	160, 191, 633
Mox20I	TGGCCA	1 cut(s)	443
MroNI	GCCGGC	2 cut(s)	176, 236
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	2 cut(s)	435, 578
Msp20I	TGGCCA	1 cut(s)	443
MspI	CCGG	3 cut(s)	177, 224, 237
MspR9I	CCNGG	2 cut(s)	189, 224
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	7 cut(s)	117, 233, 242, 251, 274, 593, 596
NaeI	GCCGGC	2 cut(s)	178, 238
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	201
NgoMIV	GCCGGC	2 cut(s)	176, 236
NlaIII	CATG	2 cut(s)	86, 115
NlaIV	GGNNCC	3 cut(s)	136, 253, 402
NspI	RCATGY	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	236
PdiI	GCCGGC	2 cut(s)	178, 238
PfeI	GAWTC	1 cut(s)	409
PkrI	GCNGC	4 cut(s)	175, 235, 589, 598
PluTI	GGCGCC	1 cut(s)	255
PpuMI	RGGWCCY	2 cut(s)	51, 401
Psp5II	RGGWCCY	2 cut(s)	51, 401
Psp6I	CCWGG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	136, 253, 402
PspPI	GGNCC	6 cut(s)	51, 97, 305, 401, 482, 572
PspPPI	RGGWCCY	2 cut(s)	51, 401
RsaI	GTAC	2 cut(s)	170, 476
RsaNI	GTAC	2 cut(s)	169, 475
SaqAI	TTAA	2 cut(s)	435, 578
SatI	GCNGC	4 cut(s)	174, 234, 588, 597
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	6 cut(s)	51, 97, 305, 401, 482, 572
ScrFI	CCNGG	2 cut(s)	189, 224
SetI	ASST	8 cut(s)	28, 49, 53, 126, 143, 250, 552, 592
SfaNI	GCATC	1 cut(s)	264
SfoI	GGCGCC	1 cut(s)	253
SinI	GGWCC	4 cut(s)	51, 97, 401, 572
Sse9I	AATT	1 cut(s)	579
SsiI	CCGC	3 cut(s)	174, 233, 240
SspDI	GGCGCC	1 cut(s)	251
SspMI	CTAG	2 cut(s)	48, 600
StyD4I	CCNGG	2 cut(s)	187, 222
StyI	CCWWGG	2 cut(s)	54, 255
TaaI	ACNGT	3 cut(s)	91, 160, 448
TasI	AATT	1 cut(s)	579
TauI	GCSGC	2 cut(s)	176, 236
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	2 cut(s)	435, 578
Tru9I	TTAA	2 cut(s)	435, 578
TscAI	CASTG	2 cut(s)	163, 451
TseI	GCWGC	2 cut(s)	587, 596
TspDTI	ATGAA	4 cut(s)	18, 58, 303, 506
TspRI	CASTG	2 cut(s)	163, 451
VpaK11BI	GGWCC	4 cut(s)	51, 97, 401, 572
XceI	RCATGY	1 cut(s)	86
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XspI	CTAG	2 cut(s)	48, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.