Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002246

Physical Location & Seq

Genomic Coordinates Reverse (-)

47575043 .. 47579900

Gene Structure 4858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG372400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGTGCCATGAAGGCTGCTTTGGGAGATGTGGTGTTGACGTTTATGTGGGTTTTCTGCGCATCGACGCTTGGACTGATGACGAGTCTGATCGCAAATGCAATTGGGCTTCAAGGCCCCGAGCTCTGGGCTTCTTTCGGCATCACCACTTGCCTCGTCTTCGTCCTCGTCTTCGTCTTCACCATCATCGGAGACGCTTTGGGTGGGGCCAGCTTCAACCCCACTGGCACCGCCTCTTTCTATGCCGCCGGCGTTGGTGCCGACACCCTCTTCTCCATGGCCCTCCGCTTTCCTGCCCAGACTTTGGGTGCTGTGGGTGGCGCTCTGGCCATTAAGGAAGTCATCCCCCCTCAGTACAAGCACATGATTGGAGGCCCCTCCTTAAAAGTTGACTTGCATACCGGAGCTCTTGCCGAGGGGGTCTTGACTTTCCTTATCTCCTTCATTGTCCTTGTCATCATCCTCAGGGGTCCTCGTAGCTCATTCCTGAAGACATTGCTTCTTGCTGTGGTGACTGTCGCATTGGTTGTTGCTGGTTCTGTCTATACTGGGCCTTCCATGAATCCTGCTAATGTAAGCAAACCATTTCCTTTTTCTTTTCTTTTTTCTTTTTTTTTTTGTCTTTTTCTTTCAGAGTCACAATGGTGTGTAGAACAAATGGAATTCAGTTTAGAAACAGATATAAACCACCAGCTTTGCACCGGTAAGGTTTTAGGAAGTACTCTTAGATCAAAATTAGAAATTTTTTGGCTTCACCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012505 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

253

Amino Acids

26.98

Weight (kDa)

6.4

Isoelectric Point (pI)

26.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	3 - 191	6.9e-08	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04090 AT5G18290 AT5G18290
fragaria_vesca	FvH4_6g00600 FvH4_6g00600 FvH4_6g43020 FvH4_6g43030
malus_domestica	MD09G1110400.v1.1 MD14G1000500.v1.1 MD17G1098100.v1.1
prunus_persica	Prupe.3G216100_v2.0.a1 Prupe.7G000900_v2.0.a1
pyrus_communis	pycom09g03280 pycom49g00030
rosa_chinensis	RchiOBHm_Chr2g0159011 RchiOBHm_Chr2g0159031 RchiOBHm_Chr3g0497551 RchiOBHm_Chr5g0069711
rosa_laevigata	RLG00000021130 RLG00000021131 RLG00000022454
rosa_multiflora	Rmu_co8255671.1_g000001 Rmu_sc0000212.1_g000020 Rmu_sc0008836.1_g000002 Rmu_sc0012866.1_g000001 Rmu_ssc0000226.1_g000032
rosa_roxburghii	Rroxscaffold_6G00387940
rosa_rugosa	Rorug02G0473400 Rorug02G0473500 Rorug03G0293400 Rorug03G0293400 Rorug03G0293400
rosa_samantha	Rh2BG552800 Rh2BG552900 Rh2DG562800 Rh2DG562900 Rh3AG337500 Rh3BG375800 Rh3CG371800 Rh3DG372400
rosa_wichuraiana	Rw0G011440 Rw2G044700 Rw2G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	61
AccB1I	GGYRCC	3 cut(s)	5, 227, 257
AccB7I	CCANNNNNTGG	1 cut(s)	304
AciI	CCGC	3 cut(s)	231, 246, 286
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	662, 741
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	2 cut(s)	356, 721
AfiI	CCNNNNNNNGG	2 cut(s)	126, 304
AgeI	ACCGGT	1 cut(s)	701
AgsI	TTSAA	2 cut(s)	113, 217
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AleI	CACNNNNGTG	1 cut(s)	643
AluBI	AGCT	5 cut(s)	124, 213, 407, 480, 694
AluI	AGCT	5 cut(s)	124, 213, 407, 480, 694
Alw21I	GWGCWC	2 cut(s)	126, 409
Alw26I	GTCTC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	6 cut(s)	115, 207, 279, 327, 373, 551
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	2 cut(s)	662, 741
AsiGI	ACCGGT	1 cut(s)	701
AspLEI	GCGC	2 cut(s)	62, 323
AspS9I	GGNCC	6 cut(s)	116, 207, 280, 374, 470, 551
AsuHPI	GGTGA	4 cut(s)	136, 172, 523, 746
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	470
AxyI	CCTNAGG	1 cut(s)	464
BalI	TGGCCA	1 cut(s)	329
BanI	GGYRCC	3 cut(s)	5, 227, 257
BanII	GRGCYC	2 cut(s)	126, 409
BbsI	GAAGAC	4 cut(s)	151, 163, 169, 497
Bbv12I	GWGCWC	2 cut(s)	126, 409
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	760
BfoI	RGCGCY	1 cut(s)	324
BglI	GCCNNNNNGGC	1 cut(s)	14
BisI	GCNGC	2 cut(s)	18, 246
BlsI	GCNGC	2 cut(s)	19, 247
BmcAI	AGTACT	1 cut(s)	721
Bme18I	GGWCC	1 cut(s)	470
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	6 cut(s)	116, 207, 280, 374, 470, 551
BmiI	GGNNCC	7 cut(s)	7, 118, 208, 229, 259, 376, 471
BmrI	ACTGGG	1 cut(s)	558
BmsI	GCATC	2 cut(s)	71, 150
BmuI	ACTGGG	1 cut(s)	558
BpiI	GAAGAC	4 cut(s)	151, 163, 169, 497
BsaJI	CCNNGG	2 cut(s)	276, 414
BsaWI	WCCGGW	2 cut(s)	401, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 304
Bse118I	RCCGGY	2 cut(s)	248, 701
Bse1I	ACTGG	2 cut(s)	229, 553
Bse21I	CCTNAGG	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	276, 414
BseGI	GGATG	2 cut(s)	342, 459
BseLI	CCNNNNNNNGG	2 cut(s)	126, 304
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	2 cut(s)	365, 478
BseNI	ACTGG	2 cut(s)	229, 553
BseXI	GCAGC	1 cut(s)	4
BshFI	GGCC	6 cut(s)	117, 209, 281, 329, 375, 553
BshNI	GGYRCC	3 cut(s)	5, 227, 257
BshTI	ACCGGT	1 cut(s)	701
BsiHKAI	GWGCWC	2 cut(s)	126, 409
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	249, 402, 702
BslI	CCNNNNNNNGG	2 cut(s)	126, 304
BsmAI	GTCTC	1 cut(s)	186
BsmBI	CGTCTC	1 cut(s)	186
BsnI	GGCC	6 cut(s)	117, 209, 281, 329, 375, 553
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	126, 409
Bsp143I	GATC	2 cut(s)	90, 728
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	3 cut(s)	231, 246, 286
BspANI	GGCC	6 cut(s)	117, 209, 281, 329, 375, 553
BspCNI	CTCAG	2 cut(s)	364, 477
BspLI	GGNNCC	7 cut(s)	7, 118, 208, 229, 259, 376, 471
BspT107I	GGYRCC	3 cut(s)	5, 227, 257
BsrDI	GCAATG	1 cut(s)	494
BsrFI	RCCGGY	2 cut(s)	248, 701
BsrI	ACTGG	2 cut(s)	229, 553
BssAI	RCCGGY	2 cut(s)	248, 701
BssECI	CCNNGG	2 cut(s)	276, 414
BssMI	GATC	2 cut(s)	90, 728
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	211, 250
BstDEI	CTNAG	3 cut(s)	351, 464, 725
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	342, 459
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	2 cut(s)	62, 323
BstKTI	GATC	2 cut(s)	93, 731
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	2 cut(s)	90, 728
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	4
BstV2I	GAAGAC	4 cut(s)	151, 163, 169, 497
Bsu36I	CCTNAGG	1 cut(s)	464
BsuRI	GGCC	6 cut(s)	117, 209, 281, 329, 375, 553
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	342, 459
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	211, 250
CfoI	GCGC	2 cut(s)	62, 323
Cfr10I	RCCGGY	2 cut(s)	248, 701
Cfr13I	GGNCC	6 cut(s)	116, 207, 280, 374, 470, 551
CseI	GACGC	2 cut(s)	76, 203
Csp6I	GTAC	2 cut(s)	355, 720
CspAI	ACCGGT	1 cut(s)	701
CspCI	CAANNNNNGTGG	2 cut(s)	677, 712
CviAII	CATG	4 cut(s)	10, 277, 364, 559
CviQI	GTAC	2 cut(s)	355, 720
DdeI	CTNAG	3 cut(s)	351, 464, 725
DpnI	GATC	2 cut(s)	92, 730
DpnII	GATC	2 cut(s)	90, 728
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Ecl136II	GAGCTC	2 cut(s)	124, 407
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	2 cut(s)	126, 409
Eco47I	GGWCC	1 cut(s)	470
Eco53kI	GAGCTC	2 cut(s)	124, 407
Eco57I	CTGAAG	1 cut(s)	509
Eco81I	CCTNAGG	1 cut(s)	464
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	2 cut(s)	124, 407
EcoO109I	RGGNCCY	3 cut(s)	116, 374, 470
EcoRI	GAATTC	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	126, 409
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	4 cut(s)	13, 280, 367, 562
FaiI	YATR	9 cut(s)	11, 47, 243, 278, 365, 399, 546, 560, 683
FatI	CATG	4 cut(s)	9, 276, 363, 558
Fnu4HI	GCNGC	2 cut(s)	18, 246
FokI	GGATG	2 cut(s)	329, 446
FriOI	GRGCYC	2 cut(s)	126, 409
Fsp4HI	GCNGC	2 cut(s)	18, 246
FspBI	CTAG	1 cut(s)	760
FspI	TGCGCA	1 cut(s)	61
GlaI	GCGC	2 cut(s)	61, 322
GluI	GCNGC	2 cut(s)	18, 246
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	6 cut(s)	117, 209, 281, 329, 375, 553
HapII	CCGG	3 cut(s)	249, 402, 702
HgaI	GACGC	2 cut(s)	76, 203
HhaI	GCGC	2 cut(s)	62, 323
Hin1II	CATG	4 cut(s)	13, 280, 367, 562
Hin6I	GCGC	2 cut(s)	60, 321
HinP1I	GCGC	2 cut(s)	60, 321
HincII	GTYRAC	2 cut(s)	39, 391
HindII	GTYRAC	2 cut(s)	39, 391
HinfI	GANTC	3 cut(s)	85, 562, 635
HpaII	CCGG	3 cut(s)	249, 402, 702
HphI	GGTGA	4 cut(s)	136, 172, 523, 746
Hpy166II	GTNNAC	2 cut(s)	39, 391
Hpy188I	TCNGA	3 cut(s)	90, 191, 634
Hpy188III	TCNNGA	2 cut(s)	424, 487
Hpy8I	GTNNAC	2 cut(s)	39, 391
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	3 cut(s)	7, 451, 564
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	101, 397, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	3 cut(s)	351, 464, 725
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	13, 280, 367, 562
HspAI	GCGC	2 cut(s)	60, 321
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	90, 728
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	2 cut(s)	71, 150
MaeI	CTAG	1 cut(s)	760
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	511, 636
MalI	GATC	2 cut(s)	92, 730
MboI	GATC	2 cut(s)	90, 728
MboII	GAAGA	5 cut(s)	151, 163, 169, 262, 502
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	126, 409
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	4 cut(s)	102, 662, 734, 741
MluNI	TGGCCA	1 cut(s)	329
MlyI	GAGTC	2 cut(s)	94, 644
Mox20I	TGGCCA	1 cut(s)	329
MreI	CGCCGGCG	1 cut(s)	248
MroNI	GCCGGC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	2 cut(s)	333, 383
MslI	CAYNNNNRTG	1 cut(s)	643
Msp20I	TGGCCA	1 cut(s)	329
MspI	CCGG	3 cut(s)	249, 402, 702
MunI	CAATTG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	14
NaeI	GCCGGC	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	90, 728
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	4 cut(s)	13, 280, 367, 562
NlaIV	GGNNCC	7 cut(s)	7, 118, 208, 229, 259, 376, 471
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	2 cut(s)	511, 636
NsbI	TGCGCA	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	643
PdiI	GCCGGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	562
PflMI	CCANNNNNTGG	1 cut(s)	304
PinAI	ACCGGT	1 cut(s)	701
PkrI	GCNGC	2 cut(s)	19, 247
PleI	GAGTC	2 cut(s)	93, 643
PpsI	GAGTC	2 cut(s)	93, 643
PpuMI	RGGWCCY	1 cut(s)	470
Psp124BI	GAGCTC	2 cut(s)	126, 409
Psp5II	RGGWCCY	1 cut(s)	470
PspN4I	GGNNCC	7 cut(s)	7, 118, 208, 229, 259, 376, 471
PspPI	GGNCC	6 cut(s)	116, 207, 280, 374, 470, 551
PspPPI	RGGWCCY	1 cut(s)	470
RsaI	GTAC	2 cut(s)	356, 721
RsaNI	GTAC	2 cut(s)	355, 720
RseI	CAYNNNNRTG	1 cut(s)	643
SacI	GAGCTC	2 cut(s)	126, 409
SaqAI	TTAA	2 cut(s)	333, 383
SatI	GCNGC	2 cut(s)	18, 246
Sau3AI	GATC	2 cut(s)	90, 728
Sau96I	GGNCC	6 cut(s)	116, 207, 280, 374, 470, 551
ScaI	AGTACT	1 cut(s)	721
SchI	GAGTC	2 cut(s)	94, 644
SduI	GDGCHC	2 cut(s)	126, 409
SetI	ASST	7 cut(s)	44, 126, 215, 409, 482, 696, 711
SfaNI	GCATC	2 cut(s)	71, 150
SgrAI	CRCCGGYG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	643
Sse9I	AATT	4 cut(s)	102, 662, 734, 741
SsiI	CCGC	3 cut(s)	231, 246, 286
SspMI	CTAG	1 cut(s)	760
SstI	GAGCTC	2 cut(s)	126, 409
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	65
TasI	AATT	4 cut(s)	102, 662, 734, 741
TatI	WGTACW	2 cut(s)	354, 719
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	2 cut(s)	333, 383
Tru9I	TTAA	2 cut(s)	333, 383
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	2 cut(s)	511, 636
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	511, 636
TspDTI	ATGAA	3 cut(s)	26, 433, 575
TspRI	CASTG	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	470
XapI	RAATTY	2 cut(s)	662, 741
XspI	CTAG	1 cut(s)	760
ZrmI	AGTACT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.