Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8255671.1

Orthogroup ID

OG0002246

Physical Location & Seq

Genomic Coordinates Reverse (-)

46 .. 771

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8255671.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgggtagtctgattaaagcagctctgggagatgcagttttgacctccatgtgggttttcagcgccccatccatgggggttttcacaaccatcatagcatcgtttcttggagtccaagcaaggtccttgataggccttttcatcaccaccatacttgccacaattttggtattgactttcagcttgattggcaagctcttgggtggtgccagcttcaatccatccaccacagcaagcttctacgccgccggcctcagtccggcaacctccctgatctcgatggctgtcaggttcccggctcaagccgctggcggggtaggcggcgccaaggccatcctgcaggtgatgcctgacaagttcaagcattttgtcaaagggccttctctgaaagtggatgtgaaaagtggtgccgttgctgaagggttgttcactttttctctttgctttgctttgctttggattatacttaggggtcctaagaatccaatagtgcaaatctggttgctttctgtggctactgtgggattggttgttgcggggagtggtttcacagggccttctatgaaccctgctaatgcttatggctgggcttatgtcaataactggcacaacacttgggagcttttctttgtttattggattggtcctttaattggagcaattttggctgctagggtattcaaggttttgtttcctccaccagaaccaaaggagaagaaagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

241

Amino Acids

25.45

Weight (kDa)

9.96

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04090 AT5G18290 AT5G18290
fragaria_vesca	FvH4_6g00600 FvH4_6g00600 FvH4_6g43020 FvH4_6g43030
malus_domestica	MD09G1110400.v1.1 MD14G1000500.v1.1 MD17G1098100.v1.1
prunus_persica	Prupe.3G216100_v2.0.a1 Prupe.7G000900_v2.0.a1
pyrus_communis	pycom09g03280 pycom49g00030
rosa_chinensis	RchiOBHm_Chr2g0159011 RchiOBHm_Chr2g0159031 RchiOBHm_Chr3g0497551 RchiOBHm_Chr5g0069711
rosa_laevigata	RLG00000021130 RLG00000021131 RLG00000022454
rosa_multiflora	Rmu_co8255671.1_g000001 Rmu_sc0000212.1_g000020 Rmu_sc0008836.1_g000002 Rmu_sc0012866.1_g000001 Rmu_ssc0000226.1_g000032
rosa_roxburghii	Rroxscaffold_6G00387940
rosa_rugosa	Rorug02G0473400 Rorug02G0473500 Rorug03G0293400 Rorug03G0293400 Rorug03G0293400
rosa_samantha	Rh2BG552800 Rh2BG552900 Rh2DG562800 Rh2DG562900 Rh3AG337500 Rh3BG375800 Rh3CG371800 Rh3DG372400
rosa_wichuraiana	Rw0G011440 Rw2G044700 Rw2G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	331
AccB1I	GGYRCC	3 cut(s)	206, 323, 407
AciI	CCGC	5 cut(s)	246, 306, 312, 321, 536
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	324
AfiI	CCNNNNNNNGG	6 cut(s)	51, 73, 74, 259, 312, 653
AgsI	TTSAA	3 cut(s)	217, 361, 682
AluBI	AGCT	6 cut(s)	23, 183, 196, 213, 237, 622
AluI	AGCT	6 cut(s)	23, 183, 196, 213, 237, 622
AoxI	GGCC	5 cut(s)	133, 250, 330, 377, 554
ApeKI	GCWGC	2 cut(s)	20, 668
AspLEI	GCGC	2 cut(s)	65, 326
AspS9I	GGNCC	5 cut(s)	123, 377, 473, 554, 644
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	136, 355
AvaII	GGWCC	3 cut(s)	123, 473, 644
BanI	GGYRCC	3 cut(s)	206, 323, 407
BbvI	GCAGC	2 cut(s)	32, 655
BccI	CCATC	5 cut(s)	76, 98, 229, 274, 341
BceAI	ACGGC	1 cut(s)	395
BcnI	CCSGG	1 cut(s)	296
BfaI	CTAG	1 cut(s)	672
BfmI	CTRYAG	1 cut(s)	338
BfoI	RGCGCY	2 cut(s)	66, 327
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	5 cut(s)	21, 246, 306, 322, 669
BlsI	GCNGC	5 cut(s)	22, 247, 307, 323, 670
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	3 cut(s)	123, 473, 644
BmgT120I	GGNCC	5 cut(s)	123, 377, 473, 554, 644
BmiI	GGNNCC	5 cut(s)	208, 293, 325, 409, 474
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	3 cut(s)	22, 107, 336
BpuEI	CTTGAG	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	72, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	6 cut(s)	51, 73, 74, 259, 312, 653
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	608
BseDI	CCNNGG	2 cut(s)	72, 327
BseGI	GGATG	4 cut(s)	68, 221, 333, 400
BseLI	CCNNNNNNNGG	6 cut(s)	51, 73, 74, 259, 312, 653
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	32, 655
BseYI	CCCAGC	1 cut(s)	585
BshFI	GGCC	5 cut(s)	135, 252, 332, 379, 556
BshNI	GGYRCC	3 cut(s)	206, 323, 407
BsiSI	CCGG	3 cut(s)	249, 260, 296
BslI	CCNNNNNNNGG	6 cut(s)	51, 73, 74, 259, 312, 653
BsnI	GGCC	5 cut(s)	135, 252, 332, 379, 556
Bsp143I	GATC	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	5 cut(s)	246, 306, 312, 321, 536
BspANI	GGCC	5 cut(s)	135, 252, 332, 379, 556
BspCNI	CTCAG	1 cut(s)	267
BspLI	GGNNCC	5 cut(s)	208, 293, 325, 409, 474
BspMAI	CTGCAG	1 cut(s)	342
BspMI	ACCTGC	1 cut(s)	331
BspT107I	GGYRCC	3 cut(s)	206, 323, 407
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	608
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	72, 327
BssMI	GATC	1 cut(s)	273
BssNI	GRCGYC	1 cut(s)	324
BssT1I	CCWWGG	2 cut(s)	72, 327
Bst4CI	ACNGT	1 cut(s)	520
BstACI	GRCGYC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstC8I	GCNNGC	5 cut(s)	194, 211, 235, 250, 310
BstDEI	CTNAG	3 cut(s)	254, 467, 477
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	4 cut(s)	68, 221, 333, 400
BstH2I	RGCGCY	2 cut(s)	66, 327
BstHHI	GCGC	2 cut(s)	65, 326
BstKTI	GATC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	5 cut(s)	189, 305, 318, 346, 665
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	32, 655
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	5 cut(s)	135, 252, 332, 379, 556
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	4 cut(s)	68, 221, 333, 400
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	5 cut(s)	194, 211, 235, 250, 310
CfoI	GCGC	2 cut(s)	65, 326
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	5 cut(s)	123, 377, 473, 554, 644
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	2 cut(s)	49, 73
DdeI	CTNAG	3 cut(s)	254, 467, 477
DinI	GGCGCC	1 cut(s)	325
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eco130I	CCWWGG	2 cut(s)	72, 327
Eco147I	AGGCCT	1 cut(s)	135
Eco47I	GGWCC	3 cut(s)	123, 473, 644
Eco57I	CTGAAG	1 cut(s)	438
EcoO109I	RGGNCCY	4 cut(s)	123, 377, 473, 554
EcoT14I	CCWWGG	2 cut(s)	72, 327
EgeI	GGCGCC	1 cut(s)	325
EheI	GGCGCC	1 cut(s)	325
ErhI	CCWWGG	2 cut(s)	72, 327
FaeI	CATG	2 cut(s)	52, 76
FaiI	YATR	8 cut(s)	50, 74, 95, 152, 464, 563, 582, 594
FatI	CATG	2 cut(s)	48, 72
FauI	CCCGC	2 cut(s)	305, 529
Fnu4HI	GCNGC	5 cut(s)	21, 246, 306, 322, 669
FokI	GGATG	4 cut(s)	55, 208, 320, 407
Fsp4HI	GCNGC	5 cut(s)	21, 246, 306, 322, 669
FspBI	CTAG	1 cut(s)	672
GlaI	GCGC	2 cut(s)	64, 325
GluI	GCNGC	5 cut(s)	21, 246, 306, 322, 669
GsaI	CCCAGC	1 cut(s)	589
HaeII	RGCGCY	2 cut(s)	66, 327
HaeIII	GGCC	5 cut(s)	135, 252, 332, 379, 556
HapII	CCGG	3 cut(s)	249, 260, 296
HhaI	GCGC	2 cut(s)	65, 326
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	2 cut(s)	52, 76
Hin6I	GCGC	2 cut(s)	63, 324
HinP1I	GCGC	2 cut(s)	63, 324
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	2 cut(s)	111, 481
HpaII	CCGG	3 cut(s)	249, 260, 296
HphI	GGTGA	2 cut(s)	136, 355
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	2 cut(s)	12, 387
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	3 cut(s)	390, 413, 567
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	3 cut(s)	35, 340, 493
HpyF10VI	GCNNNNNNNGC	5 cut(s)	189, 305, 318, 346, 665
HpyF3I	CTNAG	3 cut(s)	254, 467, 477
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	52, 76
HspAI	GCGC	2 cut(s)	63, 324
KasI	GGCGCC	1 cut(s)	323
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	619, 656
Lsp1109I	GCAGC	2 cut(s)	32, 655
LweI	GCATC	3 cut(s)	22, 107, 336
MaeI	CTAG	1 cut(s)	672
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MluCI	AATT	3 cut(s)	162, 651, 660
Mly113I	GGCGCC	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	4 cut(s)	55, 263, 277, 705
MroNI	GCCGGC	1 cut(s)	248
MseI	TTAA	2 cut(s)	15, 650
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	3 cut(s)	249, 260, 296
MspR9I	CCNGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	5 cut(s)	189, 305, 318, 346, 665
NaeI	GCCGGC	1 cut(s)	250
NarI	GGCGCC	1 cut(s)	324
NciI	CCSGG	1 cut(s)	296
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	273
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	2 cut(s)	52, 76
NlaIV	GGNNCC	5 cut(s)	208, 293, 325, 409, 474
PaqCI	CACCTGC	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	5 cut(s)	22, 247, 307, 323, 670
PleI	GAGTC	1 cut(s)	119
PluTI	GGCGCC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	2 cut(s)	123, 473
Psp5II	RGGWCCY	2 cut(s)	123, 473
PspFI	CCCAGC	1 cut(s)	585
PspN4I	GGNNCC	5 cut(s)	208, 293, 325, 409, 474
PspPI	GGNCC	5 cut(s)	123, 377, 473, 554, 644
PspPPI	RGGWCCY	2 cut(s)	123, 473
PstI	CTGCAG	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	15, 650
SatI	GCNGC	5 cut(s)	21, 246, 306, 322, 669
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	5 cut(s)	123, 377, 473, 554, 644
SbfI	CCTGCAGG	1 cut(s)	342
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	296
SdaI	CCTGCAGG	1 cut(s)	342
SfaNI	GCATC	3 cut(s)	22, 107, 336
SfcI	CTRYAG	1 cut(s)	338
SfoI	GGCGCC	1 cut(s)	325
SinI	GGWCC	3 cut(s)	123, 473, 644
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse8387I	CCTGCAGG	1 cut(s)	342
Sse9I	AATT	3 cut(s)	162, 651, 660
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	5 cut(s)	246, 306, 312, 321, 536
SspDI	GGCGCC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	672
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	2 cut(s)	72, 327
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	1 cut(s)	278
TasI	AATT	3 cut(s)	162, 651, 660
TauI	GCSGC	3 cut(s)	248, 308, 324
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	2 cut(s)	15, 650
Tru9I	TTAA	2 cut(s)	15, 650
TseI	GCWGC	2 cut(s)	20, 668
TspDTI	ATGAA	2 cut(s)	130, 578
VpaK11BI	GGWCC	3 cut(s)	123, 473, 644
XspI	CTAG	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.